BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487069
Length=1450
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02910.1 | Symbols: | F-box/RNI-like superfamily protein | ... 2185 0.0
> AT5G02910.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:677087-679043 FORWARD LENGTH=1546
Length=1546
Score = 2185 bits (1183), Expect = 0.0
Identities = 1363/1452 (94%), Gaps = 4/1452 (0%)
Strand=Plus/Plus
Query 1 TCCCCGCCAAAACATGATAACAGGCGATTCAATCGACGGTGTAGATTTCATCAGCTCTCT 60
||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 21 TCCCCGCCAAAACATGATAACTGGCGATTCAATCGACGGTATGGATTTCATCAGCTCTCT 80
Query 61 ACCTGACGTA-ATTCTCCACCATATCCTCTCCTCTGTCCCGACCAAATCCGCGATCAGAA 119
|||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 81 ACCTGACG-AGATTCTCCACCATATCCTCTCCTCTGTTCCGACCAAATCCGCGATCAGAA 139
Query 120 CCTCTCTCTTGTCCAAACGATGGAGGTATGTTTGGTCTGAGACACCTTCTCTCTCCATTG 179
||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||
Sbjct 140 CCTCTCTCTTGTCCAAACGGTGGAGATATGTTTGGTCCGAGACACCTTCTCTCTCCATTG 199
Query 180 ATTGCCGTAGAACCGACCCTAATTCGATCGACAAAACCCTAGCTTTCTTCTCCGCTCCCA 239
||||||||||| |||| |||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 200 ATTGCCGTAGAGCCGATCCTAATTCGATCGATAAAACTCTATCTTTCTTCTCCGCTCCCA 259
Query 240 AAATCACGAGCTTCCATCTTTGTACAAGCTTACTCAACAGGATTGATCCTCTTAATAGCT 299
||||||| ||||| |||||| ||||| ||||||||||||||||||| || ||||| |||
Sbjct 260 AAATCACAAGCTTTCATCTTCATACAACCTTACTCAACAGGATTGATTCTGTTAATGGCT 319
Query 300 GGATCGAATTCGCCATTTCTCACGACTCGGAGAAGCTTTCACTGGAGTTTCGTGATTCCC 359
| ||||||||||||||||||||| || | ||||||||||||||||||| |||||||| |
Sbjct 320 GCATCGAATTCGCCATTTCTCACAACGCAGAGAAGCTTTCACTGGAGTCTCGTGATTATC 379
Query 360 GTGTTAGGGATTACAAGTTTCCTGATTTCTTCTACACCAATTCATCTGTGAAGCAACTCT 419
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GTGTCAGAAATTACAAGTTTCCTGATTTCTTCTACACCAATTCATCTGTGAAGCAACTCT 439
Query 420 TGGTCAACTCTGGATCTGTTGATTTGATTCCCAGATGCTCTGTCTCTTGGACATCTCTAA 479
| ||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||
Sbjct 440 TTGTCGACTCTGGATCTGTTCATTTGATTCCCAGATGCACTGTCTCTTGGACTTCTCTAA 499
Query 480 AGAACTTGTCTTTGAGCTTTTGCACACTTTCTGATGAATCATTTCTTAAGATTCTTTCTG 539
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 500 AGAACTTGTCTTTGAGCAATTGCACACTTTCTGATGAATCATTTCTTAAGATTCTTTCTG 559
Query 540 GTTCTCCACTTCTGGAAAGCTTGGAATTGTTGTACTGTGCTGAAT-TCATGTGTCTTGAT 598
||||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||
Sbjct 560 GTTCTCCACTTCTGGAAAGCTTGGAGTTGTTGTATTGTGCTGAATAT-ATGTGTCTTGAT 618
Query 599 CTGAGTCAATCACCGCGTTTAAAAAGATTGGAGATTGACCGTAGCGATTGGTTTATGGGG 658
||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||
Sbjct 619 CTGAGTCAATCACAGCATCTAAGAAGATTGGAGATTGACCGTAGCGATTGGTTTATGGGG 678
Query 659 CAAACGAAGATTGTGGCGCCGCATCTACATTGTTTGAGATTGAGACACTCTCGATTACCA 718
| ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 679 CCAACGAAGATTGTGGCACCGCATCTCCATTGTTTGAGATTGAGACACTCGAGATTACCA 738
Query 719 TGTAGTTTAGTGGATGTCTCTTCTTTAACCGAAGCTGACTTGAACATTTACTTTTGCGAT 778
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 739 TGTAGTTTAGTTGATGTCTCTTCTTTAACCGAAGCTGACTTGAACATTTACTTTGGCGAT 798
Query 779 CTTGGAACACTTACCGCTGGTTTTCTTCAACATAATGTGGTAAAGATGCTACAAATGTTG 838
||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 799 CTTAAAACTGTTACCGCTGGTTTTCTTCAACACAATGTGGTCAAGATGCTACAAATGTTG 858
Query 839 CAGAATGTAGAGAAGCTTACTATTGGGGGTACCTTTCTTCAGATGTTATCTCTAGCTGCG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 859 CAGAATGTAGAGAAGCTTACTATTGGGGGTACCTTTCTTCAGATGTTATCTCTTGCCGCG 918
Query 899 CTCTGTGGTGTACCTTTTCCGATGCTCAAGGTCAAAACTTTGACTCTTGAAACGATGATT 958
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 919 CTCTGTGGTGTACCTTTTCCGACGCTCAAGGTCAAAACTTTGACTCTCGAAACGATGATT 978
Query 959 ATTCGGTCTGTTATTCCTGGTATAACAGAGCTGCTACGGAACACACCTGGATTAAGGAAG 1018
||||||||||||||||||||||||||| |||| |||||| |||||||||||||| |||||
Sbjct 979 ATTCGGTCTGTTATTCCTGGTATAACAAAGCTACTACGGTACACACCTGGATTACGGAAG 1038
Query 1019 CTAACAATTCACACTGTGAAAGGCAGCAGCATATCGGAATTGCATCTCAACGCCTACTTG 1078
||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||
Sbjct 1039 CTAACAATTCACACTGTGAAATGCAGCAGCATATCGGAATTGCATCTCAATGACTACTTG 1098
Query 1079 CGTTTGCATAGCTTGAATCAGCGTCAATGCTGGAGATCAAAAGACTCGGTCTTCCCGGGC 1138
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 CGTAAACATAGCTTGAATCAGCGTCAATGCTGGAGATCAAAAGACTCGGTCTTCCCGGGC 1158
Query 1139 TCTCTTGAGACCATTTCGATGTTGGTGGGTAAACATGCAGAGTCCAATCTCGTGGCTTTG 1198
||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||
Sbjct 1159 TCTCTTGAGACCATTTCGATGTTGGCGAGTAAACACGCAGAGTCCAATCTCGTGGCTTTG 1218
Query 1199 TTCATGGAACGTCTACTGAAAAGTACAAAAAGTCTAGAAACCATGGTTGTACTCTTGGTA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1219 TTCATGGAACGTCTACTGAAAAGTACAAAAAGTCTAGAAACCATGGTTGTACTCTTGGTA 1278
Query 1259 GGTTACCTTGATGCATCAGGTTTTGAAGAACTTCTTGCAATGGCTACAACACTTTCTCAC 1318
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 GATTACCTTGATGCATTGGGTTTTGAAGAACTTCTTGCAATGGCTACAACACTTTCTCAC 1338
Query 1319 AACAACGATGTCTCCGTTTTGATTAAACGAAGCTATATAAAGTGTGTATCCAACACTTTC 1378
||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1339 AACAATGATGTCTCTGTTTTGATCAAACGAAGCTATATAAAGTATGTATCCAACACTTTC 1398
Query 1379 CCTCAGCGATAATGTCTTAATTGATCAAAAGCAAAAGCCATTGTTAAATATGTATCATTA 1438
||||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 1399 CCTCAACGATAGTGTCTCGATTGATCAAAAGCAAATGCCATTGTTAAATATGTATCATTA 1458
Query 1439 GATTTTCGACCT 1450
||||||||||||
Sbjct 1459 GATTTTCGACCT 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71485576080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5