BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487072
Length=640
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02960.1 | Symbols: | Ribosomal protein S12/S23 family prot... 1016 0.0
AT3G09680.1 | Symbols: | Ribosomal protein S12/S23 family prot... 556 7e-158
> AT5G02960.1 | Symbols: | Ribosomal protein S12/S23 family protein
| chr5:693079-694515 REVERSE LENGTH=749
Length=749
Score = 1016 bits (550), Expect = 0.0
Identities = 615/645 (95%), Gaps = 9/645 (1%)
Strand=Plus/Plus
Query 1 ATATTAAGAGTCACTGCCTTCACTAGGTTTAGGGTTTTCTCAGCCGCTTAAGAGC-TATC 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATATTAAGAGTCACTGCCTTCACTAGGTTTAGGGTTTTCTCAGCCGCTTAAGAGCTTATC 60
Query 60 ATCTCTGTGCTTCCTCCAGATACCTCTTTGCTGTTGATCTTTCTCCTCCATCAACAAACA 119
|||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCTTTGTGCTTCCTGCAAATAGCTCTTTGCTGTTGATCTTTCTCCTCCATCAACAAACA 120
Query 120 TGGGTAAGACACGTGGAATGGGAGCTGGGCGTAAGCTGAAGAGACTCCGAATCAACCAGA 179
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 TGGGTAAGACACGTGGTATGGGAGCTGGGCGTAAGCTGAAGAGACTCCGAATTAACCAGA 180
Query 180 GGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTGGGAAACGAATGGAAGAAGCCTTTTG 239
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 181 GGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTGGGAAATGAGTGGAAGAAGCCTTTTG 240
Query 240 CTGGTTCTTCTCACGCTAAAGGAATTGTCCTTGAGAAAATCGGTATTGAGGCTAAGCAGC 299
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 241 CTGGTTCTTCTCACGCTAAAGGAATTGTTCTTGAGAAAATTGGTATTGAGGCTAAGCAGC 300
Query 300 CTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTTATCAAGAATGGAAAGAAGATTG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTTATCAAGAATGGAAAGAAGATTG 360
Query 360 CTGCCTTTGTCCCCAATGACGGTTGTTTGAACTACATTGAGGAAAACGATGAGGTGTTGA 419
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 361 CTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATCGAGGAAAACGATGAGGTCTTGA 420
Query 420 TTGCTGGATTTGGTCGTAAGGGTCATGCTGTGGGAGATATTCCCGGAGTCAGGTTCAAGG 479
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 421 TTGCTGGATTTGGTCGTAAGGGTCACGCTGTGGGAGATATTCCCGGAGTTAGGTTCAAGG 480
Query 480 TCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGGAGAAGCCAA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGGAGAAGCCAA 540
Query 540 GATCTTAAACAACCCATACAAA--GCTTCAAGCTTGTGGA-ATGGATTTTGATAGTTCAG 596
|||||||| |||||| |||||| ||||||||||| || | |||| ||||||||||||||
Sbjct 541 GATCTTAAGCAACCCGTACAAAAAGCTTCAAGCTTTTG-ATATGGTTTTTGATAGTTCAG 599
Query 597 TTTAAACTCTTTGTTCTGTTCTACTTTAAGATTT-AAGAACTTGA 640
||||| |||| |||||||||||||||| | ||| ||||||||||
Sbjct 600 TTTAAG-TCTT-GTTCTGTTCTACTTTATG-TTTCAAGAACTTGA 641
> AT3G09680.1 | Symbols: | Ribosomal protein S12/S23 family protein
| chr3:2969045-2970371 REVERSE LENGTH=661
Length=661
Score = 556 bits (301), Expect = 7e-158
Identities = 392/435 (90%), Gaps = 10/435 (2%)
Strand=Plus/Plus
Query 116 AACATGGGTAAGACACGTGGAATGGGAGCTGGGCGTAAGCTGAAG-AGACTCCGAATCAA 174
|||||||||||||||||||| ||||||||||| || ||||| ||| || || || || |
Sbjct 78 AACATGGGTAAGACACGTGGTATGGGAGCTGGTCGCAAGCTTAAGCAG-CTTCGGAT-TA 135
Query 175 C-CAGAGGTGGGCTGACAAGCAGTACAAGAAGTCTCACTTG-GGAAACGAATGGAAGAAG 232
| ||||||||||| |||||||| |||||||||||| | | | || ||||| |||||||||
Sbjct 136 CTCAGAGGTGGGCGGACAAGCATTACAAGAAGTCT-AATCGAGGCAACGAGTGGAAGAAG 194
Query 233 CCTTTTGCTGGTTCTTCTCACGCTAAAGGAATTGTCCTTGAGAAAATCGGTATTGAGGCT 292
||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 195 CCTTTTGCTTGTTCTTCTCACGCTAAAGGAATCGTTCTTGAGAAAATTGGTATTGAGGCT 254
Query 293 AAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAGCTT-ATCAAGAATGG-AA 350
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 255 AAGCAGCCTAACTCTGCTATCCGTAAGTGTGCTAGAGTTCAG-TTGATCAAGAATGGTAA 313
Query 351 AGAAGATTGCTGCCTTTGTCCCCAATGACGGTTGTTTGAACTACATTGAGGAAAACGATG 410
| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |
Sbjct 314 A-AAGATTGCTGCCTTTGTCCCCAATGATGGTTGTTTGAACTACATTGAAGAAAATGACG 372
Query 411 AGGTGTTGATTGCTGGATTTGGTCGTAAGGGTCATGCTGTGGGAGATATTCCCGGAGTCA 470
|||||||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |
Sbjct 373 AGGTGTTGATTGCTGGATTTGGGCGTAAAGGTCATGCCGTCGGAGATATTCCCGGAGTTA 432
Query 471 GGTTCAAGGTCGTGAAGGTTTCTGGTGTTTCACTCTTGGCCCTCTTCAAGGAAAAGAAGG 530
||||||| || |||||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 433 GGTTCAAAGTGGTGAAGGTCTCTGGTGTCTCACTCTTGGCCCTTTTCAAGGAAAAGAAGG 492
Query 531 AGAAGCCAAGATCTT 545
||||||| || ||||
Sbjct 493 AGAAGCCTAGGTCTT 507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30894000405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5