BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487074
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1133 0.0
AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 335 6e-91
> AT5G02980.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:697993-699000 FORWARD LENGTH=1008
Length=1008
Score = 1133 bits (613), Expect = 0.0
Identities = 916/1051 (87%), Gaps = 65/1051 (6%)
Strand=Plus/Plus
Query 1 ATGAAGGAATCATCAGAGGCTGATCCTCCTCCTTCTCCGACGT-CGTTTTCTTCGTTACC 59
||||| ||||||||||| | | ||||||||||||| ||| ||||||||||||||||
Sbjct 1 ATGAATGAATCATCAGA-G-T-CTCCTCCTCCTTCT----CGTACGTTTTCTTCGTTACC 53
Query 60 ATACGACATCATTCTCAACTGTTTGGCTCGTGTCTCGAGATTCCACTATCCAACTCTATC 119
|||||||||||| ||||| |||||||||||||||||||||| ||| || |||||||||||
Sbjct 54 ATACGACATCATACTCAATTGTTTGGCTCGTGTCTCGAGATACCATTACCCAACTCTATC 113
Query 120 TCTCGTCTCCAAGG-GTTTCCAATCTCTCATCGCCTCCCGTGAGCTCTACGCTACACGAT 178
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 TCTCGTCTCCAAGGAG-TTCCAATCTCTCATCGCCTCCCGTGAGCTCTACGCTACACGAT 172
Query 179 CCCGCATCGGAAAAACCGAGAGTTTCCTCTATATCTGCTTAAACCTGACTAAGAACCACA 238
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | |
Sbjct 173 CCCGCATCGGAAAAACCGAGAGGTTCCTCTATATCTGCTTAAACCTGACTAAGAGC-A-A 230
Query 239 ACCCTAAGTATCGCTGGTTCACACTTCCCCCAGTTCCCAAC-AACCAGAAATTACTACCC 297
|||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||
Sbjct 231 -CCCTAAGTATCGCTGGTTCACACTTCCCCCAGTTCCCAACGAACAA-AAACTACTACCC 288
Query 298 ATCCCTTTGTTTCCTTATCATCTCAATTCCTCAACCGTCATC-TCAACTGGTTCAGAGAT 356
||||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 289 GTCCCTTTGTTTACTTATCATCTCAATTCCTCAACCGTC-TCCTCAACTGATTCAGAGAT 347
Query 357 TTACAGAATCGGAGGCCTCCTTTGGGGAAATAGAAACAAGAGCGTGTCGGTTTTTGATTG 416
||||| ||||||||||||| ||||||||||||||| ||||| | ||| ||||||| ||
Sbjct 348 TTACATAATCGGAGGCCTCGTTTGGGGAAATAGAAGCAAGAAAGCGTCCATTTTTGACTG 407
Query 417 TCGATCTAATCAATCGCGTAGACTCCCAAAAATGCGTCTACCTCGAGCTTCTGCTGCCGC 476
||||||| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 408 TCGATCTCATCAAACGCGTAGACTCCCAAAAATGCGTTTTCCTCGAGCTTCTGCTGCCGC 467
Query 477 TCATGTCATTGACGGTAAGATCTATGTTATTGGAGGCTACAAGTACAATGATAGCCAGAA 536
||||||||||||||||||||||||||||||||||||| | || | | | | |
Sbjct 468 TCATGTCATTGACGGTAAGATCTATGTTATTGGAGGCGGCGAG-A---T--TCG---G-- 516
Query 537 CCAAGGAGAGGTTTATGACCCAAAGACCCAAACTTGGGAGCCAATATTGCTCACAACACC 596
||||||||||||||||||| ||||||||||||| | | | ||||||||
Sbjct 517 ----GGAGAGGTTTATGACCCAACGACCCAAACTTGG---C---T----C--ACAACACC 560
Query 597 ACTAGATCTCACCACTCAAGTGTGTCGAAAAGTTTATGACAGGCATGGCATGAATATTTG 656
| |||||| ||||||| ||| ||||| |||||||||||||| ||||||| ||||||||||
Sbjct 561 AGTAGATCACACCACTGAAGAGTGTCAAAAAGTTTATGACAAGCATGGCGTGAATATTTG 620
Query 657 CTTTGTAGAGATAGACAACTTGTTGTGCCAAATATCTGTATCCGACGGGAAGCTAAATTG 716
|||||||||||||||||||||| ||||||||| || ||||| | ||||||||||| ||||
Sbjct 621 CTTTGTAGAGATAGACAACTTGCTGTGCCAAACATTTGTATTCAACGGGAAGCTATATTG 680
Query 717 GCGTCATCCAAGGGGAGATGATATTGGCTGGGCTAGGGTTAAGAGACTTGAACAGGAACG 776
|||||||||||||||||||||| |||||||||||||||||||| || | ||||||||||
Sbjct 681 GCGTCATCCAAGGGGAGATGATTTTGGCTGGGCTAGGGTTAAGGGAGTGGAACAGGAACT 740
Query 777 CTTCGGTAATCATCTTGT-TTATGTGGAAAAATCCGGCGGAGGAAGAAGAGTGACAGTGT 835
|||| ||||||||||| | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 741 CTTCCGTAATCATCTT-TCTTATGTGGACAAATCCGGCGGAGGAAGAAGAGTGACAGTGT 799
Query 836 GGTGGAACTCTGTGGTG-T-TTCA-CT---A---TC--GG-T---CTAGGGAATATGAAA 880
||||||| ||||||||| | || || | || || | ||| ||||| ||| |
Sbjct 800 GGTGGAAGTCTGTGGTGGTGTTTGGCTGTCAAGGTCTTGGCTATTCTACGGAATTTGATA 859
Query 881 CAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACACGGTTTAGAAGAGGTTTGGGGAT 940
|||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||
Sbjct 860 CAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTTTAAAAGAGCTTTGGGGAT 919
Query 941 TTGTTGAATGGTCTAAAAAAGTGTTTACATTTAATGGG-TGTGACTCTCCTACGAATTTC 999
|||| |||||||||| ||||||||| |||| ||| ||| ||||| ||||||||| ||||
Sbjct 920 TTGTAGAATGGTCTAGAAAAGTGTTCACATGTAA-GGGATGTGATTCTCCTACGGATTTT 978
Query 1000 GTTATGGATTCTG-CCATTGTGACCTGTTGA 1029
||||||||||||| || ||||||| | ||||
Sbjct 979 GTTATGGATTCTGTCC-TTGTGACATATTGA 1008
> AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113
Score = 335 bits (181), Expect = 6e-91
Identities = 451/577 (78%), Gaps = 35/577 (6%)
Strand=Plus/Plus
Query 35 CTCCGACGTCGTTTTCTTCGTTACCATACGACATCATTCTCAACTGTTTGGCTCGTGTCT 94
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 41 CTCCGACGTCGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCT 100
Query 95 CGAGATTCCACTATCCAACTCTATCTCTCGTCTCCAAGGGTTTCCAATCTCTCATCGCCT 154
| |||||||| |||||||||||||| || |||| ||||||||||| ||| ||| | | ||
Sbjct 101 CCAGATTCCATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGACT 160
Query 155 CCCGTGAGCTCTACGCTACACGATCCCGCATCGGAAAAACCGAGAGTTTCCTCTATATCT 214
||||||||||| |||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 161 CCCGTGAGCTCCACGCAACACGATCTTGCATCGGAAAAACCGAGAGTTTCCTCTACGTCT 220
Query 215 GCTTAAACCTG-ACTAAGAACCACAACCCTA-A--GTA-TCG-C--TGGTTCACACTTCC 266
||||| ||||| | || ||| | | || | | || || | ||||| | | || |
Sbjct 221 GCTTAGACCTGCA-TAGGAATTGCTATCC-AGACTGTCCTCCACGATGGTTTATAGTTTC 278
Query 267 CCC-AGTTCCCAACAACCAGAAATT-ACTACCCATCCCTTTGTTTCCTTATCATCTCAAT 324
||| | || |||| | | ||||| | | ||| ||||||| | || ||| ||| | |
Sbjct 279 CCCGA-TTACCAA-A-C-AGAAACTGAA-ACCTATCCCTTCGGTTACTTGTCA----A-T 328
Query 325 TCCTCAACCGTCATCTCAA-CTGGTTCAGAGATTTACAGAATCGGAGGCCTCCTTTGG-G 382
|||||||||| | |||| | |||||| ||||||||| |||||||||| || || | |
Sbjct 329 -CCTCAACCGTTGTATCAATC-GGTTCAAAGATTTACATAATCGGAGGCTTCGTT-GATG 385
Query 383 GAAATAGAAACAAGAGCGTG-TCGGTTTTTGATTGTCGATCTAATCAATCGCGTAGACTC 441
|| |||| | || ||| || | | | | ||||||| |||| || || ||||||||||
Sbjct 386 GACATAGTAGCAGGAGATTGATAG-TACTCGATTGTCCATCTCATGGATGGCGTAGACTC 444
Query 442 CCAAAAATGCGTCTACCTCGAGCTT--CTGCTGCCGCTCATGTCATTGACGGTAAGATCT 499
|| | |||||| |||||||| | | || || ||| |||| || ||| ||||||||
Sbjct 445 CCCGAGATGCGTGTACCTCGA-CAAAAC-GCAGCAGCTGATGTAATCAACGATAAGATCT 502
Query 500 ATGTTATTGGAGGCTACAAGTAC-AATGATAGCCAGAACCAAGGAGAGGTTTATGACCCA 558
| || |||||||||| | ||| | || ||| | || | ||||||||||||||||||
Sbjct 503 ACGTGATTGGAGGCT-CTAGTTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCA 561
Query 559 AAGACCCAAACTTGGGAGCCAATATTGCTCACAACAC 595
||||||||||||||||||||| |||||| ||||||||
Sbjct 562 AAGACCCAAACTTGGGAGCCAGTATTGCCCACAACAC 598
Score = 130 bits (70), Expect = 3e-29
Identities = 93/104 (89%), Gaps = 2/104 (2%)
Strand=Plus/Plus
Query 866 CTAGGGAATATGAAACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACACGGT-TTA 924
||| ||||| | ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 932 CTAAGGAATGTAAAACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTGTTG 991
Query 925 GAAGAGGTTTGGGGATTTGTTGAATGGTCTAAAAAAGTGTTTAC 968
||| ||||||| |||||||||||||||||||| || || |||||
Sbjct 992 GAA-AGGTTTGTGGATTTGTTGAATGGTCTAAGAATGTCTTTAC 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5