BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487077
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03040.1 | Symbols: iqd2 | IQ-domain 2 | chr5:710102-712788 ... 2824 0.0
AT3G09710.2 | Symbols: IQD1 | IQ-domain 1 | chr3:2976605-297938... 287 3e-76
> AT5G03040.1 | Symbols: iqd2 | IQ-domain 2 | chr5:710102-712788
REVERSE LENGTH=1911
Length=1911
Score = 2824 bits (1529), Expect = 0.0
Identities = 1807/1936 (93%), Gaps = 39/1936 (2%)
Strand=Plus/Plus
Query 1 ctctctctctctTCTTCATTCGCAATTATGATAATGTGAAAGCATaagaaagaagaagaa 60
||||||||||||||| |||| |||||||||||||||||||||| || |||
Sbjct 10 CTCTCTCTCTCTTCTCCATTTGCAATTATGATAATGTGAAAGC---------AATTCGAA 60
Query 61 gaagaaaagTTATCTTCGCACCTCAGCAAAGATCCAAACTCTCATCGATTCGATTCTT-G 119
||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 GAAGAAAAGTTATCTTCGCACCTCAGCAAAGATCC--A-----ATCGATTCGATTCTTAA 113
Query 120 GCTTTTTCGTCTTCTCCGATAAGGTCACTACTTACAAGCCGCGTTGAGGTTTAGTTGACT 179
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 114 GCTTTTTCGTCTTCTCCGATAAGGTCACTACTTAGAAGCCGCGTTGTGGTTTAGTTGACT 173
Query 180 CCTCCAGGTTTTATATCTTCAAG-GGTTTCGTCTATCAGATCTGGTGTCACTGTCTTCTC 238
|||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 174 CCTCCAGG-TTT-TATCTTCAAGCTTTTTCGTCTATCAGATCTGGTGTCACTGTCTTCTC 231
Query 239 ACAGGATTACATAGAGATGGGGAAAAAAGCTAAATGGTTTTCAAGTGTTAAGAAAGCATT 298
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 ATAGGATTACATAGAGATGGGGAAAAAAGCTAAATGGTTTTCAAGTGTTAAGAAAGCATT 291
Query 299 CAGCCCAGATTCAAAGAAGTCGAAACAAAAATTGGCTGAGGGACAAAATGGTGTGATCTC 358
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 292 CAGCCCAGATTCAAAGAAGTCGAAGCAAAAATTGGCTGAGGGACAAAATGGTGTTATCTC 351
Query 359 TAATCCTCCTGTGGTTGATAATGTTAGACAAtcttcttcttctcctcctcctcctgctct 418
|||||||||||| || ||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 352 TAATCCTCCTGTTGTGGATAATGTTAGACAATCTTCTTC-T-T-CTCCTCCTCCTGCTCT 408
Query 419 tcctcctcGTGAGGTTAGAGTAGCTGAAGTGATTGTTGAACGGAACAGGGATCTTTCCCC 478
| |||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 409 TGCTCCTCGTGAAGTGAGAGTAGCTGAAGTGATTGTTGAACGGAACAGGGATCTTTCACC 468
Query 479 TCCTTCGACTGCAGATGCTGTGAATGTTACAGCTGCTGATATTCCTGTAGTTCCATCTTC 538
|||||| || |||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 469 TCCTTCTACAGCAGATGCTGTGAATGTTACAGCTACTGATGTTCCTGTAGTTCCATCTTC 528
Query 539 ATCTGCTCCTGGTGTTGTTCGTCGCGCTACACCTGCTCGATTTGCGGGAAAGTCGAATGA 598
|||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||
Sbjct 529 ATCTGCTCCTGGTGTTGTTCGTCGCGCTACACCTACTCGATTTGCTGGAAAGTCAAACGA 588
Query 599 AGAAGCCGCTGCTATCTTGATTCAAACTATTTTTAGAGGCTATTTGGCAAGAAGAGCACT 658
||||||||||||||||||||| || ||||| |||||||| ||||||||||| ||||| |
Sbjct 589 AGAAGCCGCTGCTATCTTGATCCAGACTATATTTAGAGGTTATTTGGCAAGGAGAGCGTT 648
Query 659 GCGGGCAATGAGGGGTTTGGTCAGGCTTAAGTTATTGATGGAAGGCTCTGTTGTTAAACG 718
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 649 GCGGGCAATGAGGGGTTTGGTCAGACTTAAGTTATTGATGGAAGGATCTGTTGTTAAGCG 708
Query 719 GCAAGCTGCAAATACTTTAAAATGTATGCAGACTCTCTCTCGTGTACAGTCACAGATCCG 778
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 709 GCAAGCTGCAAATACTCTAAAATGTATGCAGACTCTCTCTCGTGTACAGTCGCAGATCCG 768
Query 779 AGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCGCCAGAAACAACTCCTTCAGAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGGCTCGCCAGAAACAACTCCTTCAGAA 828
Query 839 GCATGCCAAAGAGCTAACTGGCTTGAAGAACGGGGATAACTGGAATGATAGCATTCAATC 898
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 ACATGCTAAAGAGCTAGCTGGCTTGAAGAACGGGGATAACTGGAATGATAGCATTCAATC 888
Query 899 AAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAG 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAAGGAGAAAGTTGAAGCGAATTTGCTAAGCAAGTACGAGGCAACAATGAGAAGGGAAAG 948
Query 959 GGCATTGGCTTATGCATACTCTCATCAGCAAAACTGGAAGAACAACTCTAAATCTGGTAA 1018
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 949 GGCATTGGCTTATTCATACTCTCATCAGCAAAACTGGAAGAACAACTCTAAATCTGGAAA 1008
Query 1019 CCCGATGTTCATGGATCCAAGCAACCCGACATGGGGTTGGAGCTGGTTAGAGAGATGGAT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 CCCGATGTTCATGGATCCAAGCAACCCGACATGGGGTTGGAGCTGGTTAGAGAGATGGAT 1068
Query 1079 GGCTGGTCGGCCACTAGAGAGTTCCGAGAAAGAACAAAACAGCAACAGCAACAACGACAA 1138
||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1069 GGCTGGTAGGCCACTAGAGAGTTCCGAGAAAGAACAAA---GCAACAGCAACAATGACAA 1125
Query 1139 TGCTGCCTCGGCCAAGGGCTCTATTAACCGTAACGAAGCTGCAAAATCTATAACCCGCAA 1198
||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1126 TGCTGCCTCGGTCAAGGGCTCTATTAACCGCAACGAAGCTGCAAAATCTCTAACCCGCAA 1185
Query 1199 TGGCTCAACTCAGCCAAACACACCATCATCCGCAAGAGGGACCCCAAGAAACAAAAACAG 1258
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 TGGCTCAACTCAACCAAACACACCATCATCCGCAAGAGGGACCCCAAGAAACAAAAACAG 1245
Query 1259 TTTCTTCTCACCTCCAACTCCCTCAAGGTTAATCCAATCCTCGAGAAAATCCAACGACGA 1318
|||||||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||
Sbjct 1246 TTTCTTCTCACCTCCAACTCCCTCAAGGCTAAACCAATCCTCGAGGAAATCCAATGACGA 1305
Query 1319 CGACGCCAAAAGCACAATCTCGGTCCTGTCAGAGAGGAACCGCAGACACAGCATTGCTGG 1378
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1306 CGACTCCAAAAGCACAATCTCGGTCCTGTCCGAGAGGAACCGCAGACACAGCATTGCTGG 1365
Query 1379 TTCATCAGTCAGAGACGACGAGAGCCTCGCTGGCTCACCGGCTCTCCCGAGCTACATGGT 1438
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1366 TTCATCAGTCAGAGACGATGAGAGCCTCGCTGGCTCACCAGCTCTCCCGAGCTACATGGT 1425
Query 1439 TCCAACTAAATCAGCTAGAGCCAGGCTCAAGCCGCAAAGCCCATCAGGTGGTACCACACA 1498
|||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1426 TCCAACTAAATCAGCTCGAGCCAGGCTCAAGCCCCAAAGCCCATTAGGTGGTACCACACA 1485
Query 1499 GGAAAACGAAGGGTTCACGGACAAGGCATCTGCTAAGAAACGGCTCTCGTATCCAACTTC 1558
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1486 GGAAAACGAAGGGTTCACAGACAAGGCATCAGCTAAGAAACGGCTCTCGTATCCAACTTC 1545
Query 1559 ACCTGCATTGCCTAAACCACGGCGGTTCTCAGCTCCTCCTAAGGTGGAGAGTGGCGGTGT 1618
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1546 GCCTGCATTGCCTAAACCACGGCGGTTCTCAGCTCCCCCTAAGGTGGAGAGTGGCGGCGT 1605
Query 1619 CGCTGTGACCAACGAAGCAGGTAGCTGAGGTATTT-ATTTAATATATTTTCTTTTCCCAC 1677
| |||||||||| |||||| ||||||||||||| |||||||||| || |||||||||
Sbjct 1606 TACCGTGACCAACGGAGCAGGCAGCTGAGGTATTTTATTTAATATAATTA-TTTTCCCAC 1664
Query 1678 TTATGGATGTGTCCGAGAGATTGTCGTCTGTTATGTGTTCCCTTCATTTCGTAATTCATT 1737
||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||||||
Sbjct 1665 TTATGAATGTGTCCGAGA--TTGTTGTCTCTTATGTGTTCCCTTCATTTCGTAATTCATT 1722
Query 1738 TGTGCAGTGTAAGCGCCAGTCATTTAtttttttACGATAATAAATTTTATAACCTTTTTA 1797
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1723 TGTGCAGTGTAAGCGCCAGTCATTTATTTTTTTACTATAATAAATTTTATAACCTTTTAA 1782
Query 1798 AATTCATATGTTCCTTTGTTTCTTTGAATACTTAAGTGGTTTT-ATTAAAAATGTTGAAT 1856
||||||| |||| |||||||||||||||| |||||| |||| ||||| ||||| ||
Sbjct 1783 AATTCAT--GTTCTTTTGTTTCTTTGAATATTTAAGTTATTTTTATTAA---TGTTGGAT 1837
Query 1857 GAGTTGGAATCTGAGGCTGTTATTTGAATTGTAATGCAAGATCCTTAAAAGCTTAATTAA 1916
|| ||||||| ||| | ||||||||| ||||||||||| ||||||| |||||||||||||
Sbjct 1838 GAATTGGAATATGATGATGTTATTTGTATTGTAATGCA-GATCCTTTAAAGCTTAATTAA 1896
Query 1917 TTCTTTA-TACCTTTT 1931
|| | || ||||||||
Sbjct 1897 TT-TGTAATACCTTTT 1911
> AT3G09710.2 | Symbols: IQD1 | IQ-domain 1 | chr3:2976605-2979389
REVERSE LENGTH=1939
Length=1939
Score = 287 bits (155), Expect = 3e-76
Identities = 240/281 (85%), Gaps = 6/281 (2%)
Strand=Plus/Plus
Query 577 GATTTGCGGGAAAGTCGAATGAAGAAGCCGCTGCTATCTTGATTCAAACTATTTTTAGAG 636
||||||| || ||||| || |||||||| ||||| ||||| || || ||| ||||| |
Sbjct 602 GATTTGCAGGCAAGTCAAAGGAAGAAGCAGCTGCCATCTTAATCCAGTCTACGTTTAGGG 661
Query 637 GCTATTTGGCAAGAAGAGCACT-GCGGGCAATGAGGGGTTTGGTCAGGCTTAAGTTATTG 695
|| ||||||||||||||| | | || || |||||||| || || ||||||||| ||
Sbjct 662 GCCATTTGGCAAGAAGAG-AATCGCAGGTGATGAGGGGGCAGGAAAGACTTAAGTTACTG 720
Query 696 ATGGAAGGCTCTGTTGTTA-AACGGCAAGCTGCAAATACT-TTAAAATGTATGCAGACTC 753
|||||||| || |||| || ||||||||||||||| |||| || |||||||||||||| |
Sbjct 721 ATGGAAGGATCGGTTG-TACAACGGCAAGCTGCAATTACTCTT-AAATGTATGCAGACGC 778
Query 754 TCTCTCGTGTACAGTCACAGATCCGAGCTAGGAGAATCAGGATGTCAGAAGAGAATCAGG 813
||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 779 TCTCTCGTGTACAGTCACAAATCCGATCTAGGAGAATCAGGATGTCAGAAGAGAATCAGG 838
Query 814 CTCGCCAGAAACAACTCCTTCAGAAGCATGCCAAAGAGCTA 854
|||| || || ||||| ||||||||||||||||||||||||
Sbjct 839 CTCGACATAAGCAACTTCTTCAGAAGCATGCCAAAGAGCTA 879
Score = 281 bits (152), Expect = 1e-74
Identities = 259/308 (84%), Gaps = 18/308 (6%)
Strand=Plus/Plus
Query 870 GGGGATAACTGGAA-TGATAGCATTCAATCAAAGGAGA-AAGTTGAAGC--GAAT-TTGC 924
|||| ||| ||||| | | |||| ||| |||||||| | |||||||||| | || ||||
Sbjct 937 GGGGGTAATTGGAACT-ACAGCAATCAGTCAAAGGA-ACAAGTTGAAGCAGGTATGTTGC 994
Query 925 TAAGCAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATACTCTCATC 984
| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 995 --A-CAAGTACGAGGCAACAATGAGAAGGGAAAGGGCATTGGCTTATGCATTCACACATC 1051
Query 985 AGCAAAACTGGAAGAACAACTCTAAATCTGGTAACCCGATGTTCATGGATCCAAGCAACC 1044
||||||||| ||||| | ||| ||| ||| || ||||||||||||||||| |||||||
Sbjct 1052 AGCAAAACTTGAAGAGCTTCTCGAAAACTGCAAATCCGATGTTCATGGATCCTAGCAACC 1111
Query 1045 CGACATGGGGTTGGAGCTGGTTAGAGAGATGGATGGCTGGTCGGCCACTAG-AGAGTTCC 1103
|||| ||||||||||||||||||||||| ||||||||||| |||||| | | |||||||
Sbjct 1112 CGACTTGGGGTTGGAGCTGGTTAGAGAGGTGGATGGCTGGCCGGCCA-TGGGAGAGTTCA 1170
Query 1104 GAGAAAGAACAAAACAGCAACAGCAACAACGACAATGCTGCCTCGGCCAAGGGCTCTATT 1163
|||||||||||||||| || | |||||||||||| || |||||| ||| ||| | |
Sbjct 1171 GAGAAAGAACAAAACACCA-C--CAACAACGACAA--CT-CCTCGGTTAAGAACTCGACT 1224
Query 1164 AACCGTAA 1171
||||||||
Sbjct 1225 AACCGTAA 1232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95632038225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5