BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487079
Length=878
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03060.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1206 0.0
> AT5G03060.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G11100.2);
Has 14506 Blast hits to 10808 proteins in 1083 species: Archae
- 280; Bacteria - 2737; Metazoa - 4707; Fungi - 940; Plants
- 571; Viruses - 106; Other Eukaryotes - 5165 (source:
NCBI BLink). | chr5:716722-718014 REVERSE LENGTH=1018
Length=1018
Score = 1206 bits (653), Expect = 0.0
Identities = 812/887 (92%), Gaps = 18/887 (2%)
Strand=Plus/Plus
Query 1 ATGACTGGAAAATCATCAGCTCGTTCGGACAAATCGGGGAAGAACAAAATCTCGTCGGTG 60
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 140 ATGACTGGAAAATCATCAGCTCGTTCAAACAAATCGGGGAAGAACAAAATCTCGTCGGTG 199
Query 61 GCTACTCCGACAAGAAGCAATTTGTTTGCTCAAGAGGAGATTTTAGCAACAAAACATGAA 120
||||||||||||||||| |||||| ||| ||| ||||||||||| || ||||||||||||
Sbjct 200 GCTACTCCGACAAGAAGAAATTTGGTTGTTCAGGAGGAGATTTTGGCGACAAAACATGAA 259
Query 121 ATTCTCAAGGAGAATCATGAGAATCTGGAAAAAGATTACAAAAGTCTAGAGGCAAGTTTT 180
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 260 ATTCTCAAGGAGAATTATGAGAATCTGGAAAAAGATTACAAAAGTATAGAGGAAAGTTTT 319
Query 181 CAGCAGATGAATGAAATGAACGAGATAATGAAGTTTCA-TCATCAGAACCAAAATAAGGA 239
||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||
Sbjct 320 AAGCAGATGAATGAAATGAACGAGATAATGAAGTTTCAAT-ATCAGAAGCAAATTAAGGA 378
Query 240 ACTCGAAGAGAAAAATCTGAGCTTGCTCAAGGATTTAGAGAAAGAGAGAAGTGAGAAGGA 299
|||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 379 ACTCGAGGAGAAAATTCTAAGCTTGCTTAAGGATTTAGAGAAAGAGAGAAGTGAGAAAGA 438
Query 300 GGCGTATATGAAGGA-ATTGAAGGCAATGGAG-AGTGAGAAGGAGGCCATTATCAATGGT 357
|| |||||||||||| || ||||| |||| | |||||||| |||||||||||||||| |
Sbjct 439 GGAGTATATGAAGGAGAT-GAAGGGAATG-ATCAGTGAGAAAGAGGCCATTATCAATGAT 496
Query 358 TTGAGTATTAAGAATCAGGAGCTTTTGTTTGCGAAAGAGAAAGACGAGGAGAAGCTGAAG 417
|||||| |||||||||||||||||||| ||||||||||| |||| | |||||||||||||
Sbjct 497 TTGAGTGTTAAGAATCAGGAGCTTTTGATTGCGAAAGAGGAAGAAGTGGAGAAGCTGAAG 556
Query 418 GAGATGAAGAACAAGTATGATGAATTAAAAGAGAGATTTGATGCGGCA-AACTCACAATG 476
||||| |||||||||||| |||||| |||||||||||||||||||| || ||||||||
Sbjct 557 AAGATGGAGAACAAGTATGCTGAATTGAAAGAGAGATTTGATGCGGCTGAA-TCACAATG 615
Query 477 TTCATTTTTGAAATCGCTCTTTGACGCTGAGAATCTCTCCGGTATAGG-AGCAAGCGATG 535
|||||| ||||||||||| ||||| |||||||||||| ||||| |||| || | ||||||
Sbjct 616 TTCATTCTTGAAATCGCTTTTTGATGCTGAGAATCTCGCCGGTCTAGGGAGTA-GCGATG 674
Query 536 TGGCTTTCAAAAATGAGGTTATTGTGGTGGATGATCT-TGATGTGACTATCAAGAATGAG 594
|||||||| |||||||||||||||||||||| ||| | | ||||||||||||||||||||
Sbjct 675 TGGCTTTCGAAAATGAGGTTATTGTGGTGGAGGAT-TATAATGTGACTATCAAGAATGAG 733
Query 595 GTTATTGTGGTGGATGATCATAATGTGAATAACACTGCAACAGATACGATTGTGATCATT 654
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 734 GTTATTATGGTGGATGATCATAATGTGAATAACACTCCAACAGATACGATTGTGATCCTT 793
Query 655 GACGAGAGTGATGCTGAAAATGATAATCCTCCTCCAAGAGAGCGTAACATAATC-CGTGA 713
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | |||
Sbjct 794 GACGAGAGTGATGCTGAAAATGATAATCCTCATCCAAGAGAGAGTAACATAATCTC-TGA 852
Query 714 AAAGTCTGTTGATGTAAAACAAGAACAACAATCAGATGGACCAA-catcatcaaaagtaa 772
||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 853 AAATTCTGTTGATGTAAAACAAGAACAACAATCAGCTGGACCAAGC-TCATCAAAAGTAA 911
Query 773 atcatcgattgtcatcatcgtcatcatcatcatcatcatcatcaGATGAATATGTAA-CA 831
||| || ||||||||||||||| |||||||||||||||||||||| |||| ||||| |
Sbjct 912 ATCGTCTATTGTCATCATCGTCGTCATCATCATCATCATCATCAGTTGAACATGTATTC- 970
Query 832 GTTCAGCTTCCCTTTAAAAGGTCCCGGGATATTTATAACAAGTCTTG 878
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GTTGAGCTTCCCTTTAAAAGGTCCCGGGATATTTATAACAAGTCTTG 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42849727391
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5