BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487080
Length=1968
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03070.1 | Symbols: IMPA-9 | importin alpha isoform 9 | chr5... 2852 0.0
> AT5G03070.1 | Symbols: IMPA-9 | importin alpha isoform 9 | chr5:718204-721539
REVERSE LENGTH=1968
Length=1968
Score = 2852 bits (1544), Expect = 0.0
Identities = 1786/1902 (94%), Gaps = 19/1902 (1%)
Strand=Plus/Plus
Query 76 TTACTCCGGTGAAATTACCGAATCAAAAACCCTACGCTAGAAGAAACTAGCAGTGCTCAA 135
||||||||||||||||||||||||||||||||||| || ||||||||| || ||||||||
Sbjct 76 TTACTCCGGTGAAATTACCGAATCAAAAACCCTACTCTCGAAGAAACTTGCTGTGCTCAA 135
Query 136 GCTTC-TCTAATGGCAGATGATGGCTCCGCGTCTAATCGAAGAGACCCAATAAAGTCTTC 194
||||| || |||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 136 GCTTCTTC-AATGGCGGATGATGGCTCCGCCTCTAATCGAAGGGACCCAATAAAGTCTTC 194
Query 195 AGTTGGGCATGTTGCGGGGCAAAGAAGACGGCAACAAGCTGTTACAGTGGCAAAGGAGAG 254
|||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||| ||
Sbjct 195 AGTTGGAAATGTTGCGGGACAAAGAAGACGAAAACAAGCTGTTACAGTGGCGAAGGAAAG 254
Query 255 AAGGGAATTACTGGTTAGGGCAAAGAGGCTTTGTAGGGTGGGTACTAATGGCGATGTTGA 314
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 255 AAGGGAATTACTGGTTAGGGCAAAGCGGCTTTGTAGGGTGGGTACTAATGGCGATGTTGA 314
Query 315 GGATTCTCTTGTTGAGAATGAGATGATGATTGATGAAGAGCAGCCAATATTGGAGGCTAA 374
|||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
Sbjct 315 GGATGCTCTTGTTGAGAATGAGATGATGGTTGATGAAGAGCAGCCTATATTGGAGGCTCA 374
Query 375 AGCCAGTAAATCCGTCGAAGAGCTTAAGTCCGCTGTTCAATATCAGGGAAAAGGTGCAAT 434
|||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 375 AGCCAGTAAATCTGTGGAAGAGCTCAAGTCCGCTGTTCAATACCAGGGAAAAGGTGCAAT 434
Query 435 GCAGAAGAGGGTGACTGCTCTTCGGGAACTCAGGCGTATACTATCAAAATCCGAGTTCCC 494
||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||
Sbjct 435 GCAGAAGAGGGTGACTGCTCTTCGGGAACTCAGGCGTTTATTATCAAAATCTGAGTTCCC 494
Query 495 TCCTGTTGAAGCTGCGCTCAGCGCTGGTGCAATACCTTTACTTGTGCAGTGTCTTTCATT 554
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 495 TCCTGTTGAAGCTGCGCTCCGTGCTGGTGCAATACCTTTACTTGTGCAGTGTCTTTCATT 554
Query 555 TGGCTCTCCTGACGAACAGTTACTTGAGTCAGCTTGGTGTCTCACAAACATTGCTGCTGG 614
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 555 TGGCTCCCCCGACGAACAGTTACTTGAGTCAGCTTGGTGTCTTACCAACATTGCTGCTGG 614
Query 615 AAAACCTGAAGAAACAAAAGCTTTATTACCTGCACTGCCGTTACTCATTGCTCACCTTGG 674
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 615 AAAACCTGAAGAAACAAAAGCTCTATTACCTGCATTGCCGTTACTCATTGCTCACCTTGG 674
Query 675 AGAAAAGAGCTCTGCACCGGTGGCTGAGCAGTGTGCATGGGCAATTGGTAATGTTGCGGG 734
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 675 AGAAAAGAGCTCCGCACCGGTGGCTGAGCAGTGCGCATGGGCAATTGGTAATGTTGCCGG 734
Query 735 TGAAGGAGAAGATTTGAGAAATGTTCTTTTGTCTCAAGGGGCTTTGCCACCTCTAGCACG 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TGAAGGAGAAGATTTGAGAAATGTTCTTTTGTCTCAAGGGGCTTTGCCACCTCTAGCACG 794
Query 795 TATGATTTTTCCCGACAAGGGTTCAACAGTAAGAACAGCTGCATGGGCATTGTCAAATCT 854
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 795 TATGATTTTTCCCGACAAGGGTTCAACAGTGAGAACAGCTGCATGGGCATTGTCAAATCT 854
Query 855 GATTAAGGGACCTGAGTCGAAGGCGGCAGCACAACTTGTTAAAGTTGATGGGATACTGGA 914
|||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 855 GATTAAGGGACCTGAGTCAAAGGCAGCAGCACAACTTGTTAAAATTGATGGGATACTGGA 914
Query 915 TGCAATTCTTCGACACTTGAAGAAAACGGATGAAGAAACTGCCACGGAAATTGCATGGAT 974
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 915 TGCAATTCTTCGACACTTGAAGAAAACGGATGAGGAAACTGCCACGGAAATTGCATGGAT 974
Query 975 CATTGTTTACCTATCTGCCCTCTCAGATATAGCTACAAGTATGCTCTTGAAGGGAGGCAT 1034
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 975 CATTGTTTACCTATCTGCCCTCTCAGATATCGCTACAAGTATGCTCTTGAAGGGAGGCAT 1034
Query 1035 TCTTCAACTACTTATTGAAAGATTAGCAACCTCAAGTAGCCTACAACTTCTTATCCCGGT 1094
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1035 TCTTCAACTACTTATTGACAGATTAGCAACCTCAAGTAGCCTACAACTTCTCATCCCGGT 1094
Query 1095 TCTCCGAAGTTTAGGCAACTTTGTCGCTGTTGATCCCAAAGCAATATTAACCATTCTTAT 1154
|||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1095 TCTCCGAAGTTTAGGCAATTTTGTCGCTGTTGATCCCAAAGCAGTATTAACAATTCTTAT 1154
Query 1155 CCGTGAACAGAACACCGAAGAAAGTATCATTGGTGTGCTTGCAAAGTGCTTAAGAAGCGA 1214
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1155 CCGTGAACAGAACACTGAAGAAAGCATCATTGGTGTGCTTGCAAAGTGCTTAAGAAGCGA 1214
Query 1215 GCACCGTGTTTTAAAGAAGGAAGCTGCATGGGTGTTATCTAATATAGCCGCGGGATCCAT 1274
||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| ||
Sbjct 1215 GCACCGTGTTTTAAAGAAGGAAGCTGCTTGGGTGCTATCTAATATAGCGGCGGGATCTAT 1274
Query 1275 TGAACACAAGAGAATGATACATTCTACTGAAGTAATGCCATTGTTGCTACGGCTTCTGTC 1334
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1275 TGAACACAAGAGAATGATACATTCTACTGAAGTAATGCCATTGTTGCTACGGATTCTTTC 1334
Query 1335 CACATCGCCCTTTGATATAAGGAAAGAAGTCGCCTACGTCTTGGGCAATCTCTGTGTAGA 1394
|||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1335 CACATCCCCCTTTGATATAAGGAAAGAAGTTGCCTATGTCTTGGGAAATCTCTGTGTAGA 1394
Query 1395 ATCTGCAGCAGGAGACGGAAAACCAGGGATAATTCAAGAGCACTTAGTCTCTATCGTCAG 1454
|||||||| ||||||| |||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1395 ATCTGCAGAAGGAGACAGAAAACCAAGGATAATTCAAGAGCATTTAGTCTCTATTGTCAG 1454
Query 1455 AGGCGGTTGCCTCCCAGGTTTTATTGAGCTGGTCAGATCTCCTGATATCGAAGCTGCTAG 1514
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1455 TGGCGGTTGCCTCCGGGGTTTCATTGAGCTGGTCAGATCTCCTGATATCGAAGCTGCTAG 1514
Query 1515 GCTTGGTCTTCAGTTCATTGAGCTGGTCTTAAGAGGAATGCCAAACGGGGAAGGTCCAAA 1574
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1515 GCTTGGTCTTCAGTTCATTGAGCTGGTTTTAAGAGGAATGCCAAACGGGGAAGGGCCAAA 1574
Query 1575 GCTTGTGGAAGGAGAAGACGGTATTGATGCAATGGAAAGGTTTCAGTTTCATGAAAATGA 1634
|||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||
Sbjct 1575 GCTTGTGGAAGGAGAAGACGGTATCGATGCAATGGAACGGTTTCAGTTTCATGAGAACGA 1634
Query 1635 AGAGCT-ACGAGTCATGGCAAACAGTCTTGTGGATAAATACTTTGGTGAAGATTATGGAA 1693
|||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 AGAGCTGA-GAGTCATGGCGAACAGTCTTGTGGATAAATACTTTGGTGAAGATTATGGAA 1693
Query 1694 TCGATGAATGAAATCTCCTGGGACTTTAAGGTGGGTATACAAAGAATGTCGGATGATGGA 1753
||||||||||||||| ||| ||| |||| |||| | |||||||||| ||||||||||| |
Sbjct 1694 TCGATGAATGAAATCGCCTCGGATTTTAGGGTGAGAATACAAAGAAAGTCGGATGATGAA 1753
Query 1754 ATCAAA-GGT--CTAGTCATCTTAGCTTTTGCTTGTAAGGATagagagagtgagagaaag 1810
|||||| || |||||||||||||| ||||||||||| ||||| ||| | |||||||||
Sbjct 1754 ATCAAAAGGAAACTAGTCATCTTAGCGTTTGCTTGTAACGATAGTGAGTGAGAGAGAAAG 1813
Query 1811 agagTAGTCTTTAGGTTTTGGTTCCTCTTTGGGTTGTTGTTGTAACTACTTGTAATACAG 1870
| | |||||||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 1814 ACAATAGTCTTTAGGTTTTG-T-C-T-TTTGGGTTGTTGTTGTAACTACTTGTAATACAG 1869
Query 1871 TTTTGTCTCACC-AATTCCAtttt-ttc-tttttGTCGTATTC-CCTTGTCACTTCAAAA 1926
|||||||||||| || ||| ||| |||||||||||| | |||||||||||||||
Sbjct 1870 TTTTGTCTCACCGAAGG---TTTGATTCCTTTTTGTCGTATCCTCCTTGTCACTTCAAA- 1925
Query 1927 TCCAATTATAAGATACACTGTCAACGTAATTATGATTTTTAG 1968
|||||||||||||||||||||||| |||||||||||||||||
Sbjct 1926 TCCAATTATAAGATACACTGTCAATGTAATTATGATTTTTAG 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97489458390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5