BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487083

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03120.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   545    1e-154


> AT5G03120.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant 
structures; EXPRESSED DURING: 13 growth stages; Has 14 Blast 
hits to 14 proteins in 4 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:733979-734943 FORWARD 
LENGTH=574
Length=574

 Score =  545 bits (295),  Expect = 1e-154
 Identities = 462/531 (87%), Gaps = 57/531 (11%)
 Strand=Plus/Plus

Query  1    TTTATAAATAACGAAAATGAAATCGACCGTC---ATGATTTTCCTCATTATCTACCTCCT  57
            ||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct  68   TTTATAAGTAACGAAAATGAAATCGACCGTCATGATGATTTTCCTCATTATCTACCTCCT  127

Query  58   CCTCGCCGTGCCTTGCTTCGCTAAAGGATCGGAGCAAACGGATTCAGAGGTGTACGAGAT  117
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  128  CATCGCCGTGCCTTGCTTCGCTAAAGGATCGGAGCAAACGGATTCAGAGGTGTACGAGAT  187

Query  118  CGATTACAGGGGACCGGAGACTCATAACTCTAGACCTCCACCGGAAACTTTGCACGGCAA  177
            ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  188  CGATTACAGGGGACCAGAGACTCATAACTCTAGACCTCCACCGGAAACTATGCACGGCAA  247

Query  178  GCCACCGTACATCCACCATAATACCTCCGCAGCTGGGCTCGGTGCTCATGTAGGAGGAAA  237
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  248  GCCACCGTACATCCACCATAATACCTCCGCCGCTGGGCTCGGTGCTCATGTAGGAGGAAA  307

Query  238  GAACTAGAGAAAGAGAGAGACCTTTTCCAAGGAGAAGAGAGGGGACTCAAAAGCTTTAAG  297
            |||||||||| |||| ||||||||||||||||||||||       ||||   |    |||
Sbjct  308  GAACTAGAGAGAGAGCGAGACCTTTTCCAAGGAGAAGA-------CTCA---G----AAG  353

Query  298  TTGAAGAGGAAGTTTTACGAGAGTTGTGATATATAT--GAGTAAT----GATGTT--TT-  348
            |||||||||||| || ||||||||||||||||||||  |||||||    ||||||  || 
Sbjct  354  TTGAAGAGGAAGATT-ACGAGAGTTGTGATATATATATGAGTAATTAATGATGTTAATTG  412

Query  349  AT-----TT-AT-C---A-T-ATG-A--AT-T-----TGATCATCGATGTGTGATCAGTA  387
            ||     || || |   | | ||  |  || |     |||||||||||||||||||||||
Sbjct  413  ATACAAATTTATACTTTAATTATTTATCATATGAAGATGATCATCGATGTGTGATCAGTA  472

Query  388  CAGTTAGTGTGAATAATTTACACACTACTCTCCTCTCCTGATGTCATGTCCGGTCCTTTA  447
            ||||||||||||||||    ||||||||||||||     |||||||||||||||| ||||
Sbjct  473  CAGTTAGTGTGAATAA----CACACTACTCTCCT-----GATGTCATGTCCGGTCTTTTA  523

Query  448  TTTATTTCTTTTTTCAATTCTCATGCACCGTTCTATATATCAtttttttCG  498
            |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct  524  TTTATTTCATTTTTCAATTCTCATGCACCGTTCTCTATATCATTTTTTTCG  574



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5