BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487085
Length=2006
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03150.1 | Symbols: JKD | C2H2-like zinc finger protein | ch... 3175 0.0
AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 309 7e-83
> AT5G03150.1 | Symbols: JKD | C2H2-like zinc finger protein |
chr5:745644-749007 FORWARD LENGTH=2046
Length=2046
Score = 3175 bits (1719), Expect = 0.0
Identities = 1921/2016 (95%), Gaps = 23/2016 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaCTTATATGCTCTTGTTCTTGTTCTTCTTCTCCCCTCTA-CAAATTAAACCCTA 59
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1 AAAAAAACTTATATGCTCTTGTTCTTGTTCTTCTTCTCCCCTC-AGCATATTAAACCCTA 59
Query 60 ATTAACTATCTCTTTTGTTTGTATACTGTTCTAAACCTCCTGATCATCTTCTTGTTTTCT 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 ATTAACTATCTCTTTTGTTTGTATACTGTTATAAACCTCCTGATCATCTTCTTGTTTTCT 119
Query 120 TGCAAGATTTCAT---aaaaaaaCAAAACCCAGCTGTTTTTGTTCTTGTTCTTTAGCTCC 176
|||||||||| || |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 120 TGCAAGATTTTATAAAAAAAAAACAAAACCCAGCTGTTCTTGTTCTTGTTCTTTAGCTCC 179
Query 177 GATCCGTTTCAACTTAAATCACAGATATGCAGATGATTCCAGGAGATCCATTTTCTATTT 236
||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GATCCGTTTTAAATTAAAACACAGATATGCAGATGATTCCAGGAGATCCATTTTCTATTT 239
Query 237 CATCCTCCATGGGAGGGTTTGTTCATCAAGAAACACACCTTCATCATCCTCAGCAGCAGA 296
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 240 CATCCTCCATGGGAGGGTTTGTTCATCAAGAAACACACCTTCATCATCTTCAGCAGCAGA 299
Query 297 TCCCTGACCTCAACCCTAATTCTAACCCTAACCCAAATGTGAAACCAAACTCTTCATCAG 356
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 TCCCTGACCTTAACCCTAATTCTAACCCTAACCCAAATGCGAAACCAAACTCTTCATCAG 359
Query 357 CCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTAT 419
Query 417 CGCCAACAACACTCATGGCGACAAACAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTC 476
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CGCCAACAACACTCATGGCAACAAACAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTC 479
Query 477 AAAGGGATCAGAACTTACAACTCCATCGCCGTGGCCACAATCTTCCATGGAAGCTGAAGC 536
||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 480 AAAGGGACCAGAATTTACAACTACATCGCCGTGGCCACAACCTTCCATGGAAGCTAAAGC 539
Query 537 AACGATCCAAACAAGAGGTGATAAAAAAGAAAGTATACATATGCCCTATCAAGACTTGTG 596
|||| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 540 AACGGTCCAAACAAGAAGTGATAAAGAAGAAAGTATACATATGTCCTATCAAGACTTGTG 599
Query 597 TACACCATGATGCTTCTAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTATAGCC 656
||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 600 TACACCATGATGCCTCCAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTACAGCC 659
Query 657 GCAAACACGGTGAAAAGAAGTGGAAGTGCGAAAAGTGTTCTAAGAAATACGCTGTTCAGT 716
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 660 GCAAACACGGTGAAAAGAAGTGGAAGTGTGAAAAGTGTTCTAAGAAATACGCTGTTCAGT 719
Query 717 CTGATTGGAAGGCACATGCGAAAACTTGTGGTACTCGCGAGTATAAATGTGACTGTGGCA 776
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 720 CTGATTGGAAGGCACATGCGAAAACTTGTGGTACTCGTGAGTATAAATGTGACTGTGGCA 779
Query 777 CGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTGACTG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 780 CGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTAACTG 839
Query 837 AAGAAGGTGCGAGGATGAGTTCACTAAGTAGTAACATTCCTGTGATCTCTACGACGAATC 896
| ||||| ||||||||||||||||| |||| |||| ||| |||||||||||||||||||
Sbjct 840 AGGAAGGAGCGAGGATGAGTTCACTTAGTAACAACAATCCGGTGATCTCTACGACGAATC 899
Query 897 TGAATTTTGGAAACGATTCAAATGTTATGAATAATCCAAATCTTCCTCATGGATTTGTTC 956
||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 900 TGAATTTTGGAAATGAGTCAAATGTTATGAATAATCCAAATCTTCCTCATGGATTTGTAC 959
Query 957 ACCGAGGAGTTCATCATCCCGACATTAATGCTGCTATCTCTCAATTCGGTTTAGGGTTTG 1016
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 960 ACCGAGGAGTTCATCATCCCGACATTAATGCTGCTATCTCTCAATTCGGTCTAGGGTTTG 1019
Query 1017 GACATGACCTAAGTGCAATGCATGCGCAAGGTCTATCCGAGATGGTTCAAATGGCCTCCA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GACATGACCTAAGTGCAATGCATGCGCAAGGTCTATCCGAGATGGTTCAAATGGCCTCCA 1079
Query 1077 CCGGCAACCACCACCCCTTCCCGTCGTCATCATCATCCCTCCCTGATTTCTCCGGCCACC 1136
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCGGCAACCACCACCTCTTCCCGTCGTCATCATCATCCCTCCCTGATTTCTCCGGCCACC 1139
Query 1137 ACCAATTCCAAATTCCAACGACTTCCACAAACCCTAATCTCACCTTATCATCATCCTCAA 1196
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1140 ACCAATTCCAAATTCCAATGACTTCCACAAACCCTAGTCTCACCTTATCATCATCCTCAA 1199
Query 1197 CATCACAACAAACATCTGCTTCTCTACAACACCAAACCCTAAAAGACTCATCTTTCTCAC 1256
||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1200 CATCACAACAAACCTCAGCTTCACTACAACACCAAACCCTAAAAGACTCATCTTTCTCAC 1259
Query 1257 CACTCTTCTCCTCTTCCTCCGAAAACAAACAAAACAAGCCTCTGTCTCCAATGTCTGCAA 1316
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1260 CACTCTTCTCCTCTTCCTCCGAAAACAAACAAAACAAGCCTCTCTCTCCAATGTCTGCCA 1319
Query 1317 CAGCTCTCTTACAAAAAGCTGCACAAATGGGCTCTACTCGAAGCAATTCCACCACCGCTC 1376
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1320 CAGCTCTCTTACAAAAAGCTGCACAAATGGGCTCTACTAGAAGCAATTCCTCCACCGCTC 1379
Query 1377 CGTCCTTCTTCGCAGGCCCAACAATGACATCATCCTCAGCCACCGCTTctcctcctcctc 1436
|||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1380 CGTCATTCTTCGCCGGCCCAACAATGACATCCTCCTCGGCCACCGCTTCTCCTCCTCCT- 1438
Query 1437 ctcctAGATCGTCTTCACCAATGATGATCCAACAACAACTAAACAACTTCAACACCAATG 1496
||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 -----AGATCGTCTTCTCCAATGATGATCCAACAACAACTAAACAACTTCAACACCAATG 1493
Query 1497 TCTCAAGAGAGAATCCCAATCTTGCTCCCCCTCCTCTTAGTGGTGTCACCACTAGTAGTG 1556
||| ||||||||||| |||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 1494 TCTTAAGAGAGAATCATAATCGTGCTCCTCCTCCTCTTAGTGGTGTCTCCACTAGTAGTG 1553
Query 1557 TGGATAATAATCCCTTTCAATCGAACCGGTCGGGTCTAAACCTGGTTCAACAAATGGGTC 1616
|||||||||||||||||||||||||||| ||||||||||||| || |||||| |||||||
Sbjct 1554 TGGATAATAATCCCTTTCAATCGAACCGATCGGGTCTAAACCCGGCTCAACAGATGGGTC 1613
Query 1617 TAACCCGGGATTTTCTTGGAGTGAGCAACGAGCATCACCCTCACCAAACGGGTCGTCGTC 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1614 TAACCCGGGATTTTCTTGGAGTGAGCAACGAGCATCACCCTCACCAAACGGGTCGTCGTC 1673
Query 1677 CCTTTTTGCCTCAAGAACTCGCAAGGTTTGCTCCATTGGGTTGATTATGTGTTTAATTAA 1736
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1674 CGTTTTTGCCTCAAGAACTCGCAAGGTTTGCTCCATTGGGTTGATTATGTGTTTAATTAG 1733
Query 1737 ATACTGTGTATGGGCCGGGGGACAAGATTTTGGGTTTAATTAGGATTGGAAGTTCCTTTG 1796
|||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1734 GTACTGTGT--GGG--GGGG-ACAAGATTTTGGGTTTAATTAGGATTGGAAGTTCCTTTG 1788
Query 1797 AGGAGACAGGTCTAATTAAGAACCGTACCCCCTTGTGAAGCGGTCTGAATGTGGGGACAA 1856
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1789 AGGAGACAAGTCTAATTAAGAACCGTACCCCCTTGTGAAGCGGTCGGAATGTGGGGACAA 1848
Query 1857 AGGTTGACAAGACATCATCATATCAATTTACATTGAATGTTATGTACTTTT--ACTATGT 1914
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1849 AGGTTGACAAGACATCATCATATCAATTTACATTGAATGTTATGTACTTTTTTACTATGT 1908
Query 1915 TTTTGATTATCGCCAGTCACATAATATATACCA---TGACATGCATGGATATGTATTTCC 1971
|| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1909 TTATGATTATCGCAATTCACATAATATATACCACCATGACATGCATGGATATGTATTTCC 1968
Query 1972 GACGTTGTCGTTTTGTAAATGTTAAttt-ttttttC 2006
||| ||||||||||||||||||| ||| |||||||
Sbjct 1969 GACATTGTCGTTTTGTAAATGTTG-TTTATTTTTTC 2003
> AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:16596381-16598698
REVERSE LENGTH=1885
Length=1885
Score = 309 bits (167), Expect = 7e-83
Identities = 394/501 (79%), Gaps = 26/501 (5%)
Strand=Plus/Plus
Query 353 TCAGCCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCT 412
|||||||||| ||||||||||| || || | ||||||||||||||| || |||||||||
Sbjct 257 TCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCGCT 316
Query 413 CTATCGCC-AACAACACTCATGGCGAC-AAACAGATTCGTGTGCGAGATCTGCAACAAAG 470
||||| || ||| | |||||| | || || | ||||| | |||||| | ||||||||||
Sbjct 317 CTATCACCAAAC-TCCCTCATGACAACTAATC-GATTCATCTGCGAGGTTTGCAACAAAG 374
Query 471 GGTTTCAA-AGGGATCAGAA-CTTACAACTCCATCGCCGTGGCCACAATCTTCCATGGAA 528
| ||| || || || ||||| ||| || || || || | ||||| || |||||||||||
Sbjct 375 GATTT-AAGAGAGACCAGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAA 432
Query 529 GCTGAAGC-AACGATCCAAACAA-GAGGTGA-T-AAAAAAGAAAGTATACATATG-CCCT 583
||| |||| || || ||||||| || | | | || ||| ||||| ||||| || ||
Sbjct 433 GCTAAAGCAAAGGA--CAAACAAGGA-GCAAGTGAAGAAA-AAAGTGTACATCTGTCCAG 488
Query 584 ATCAAGACTTGTGTACACCATGATGCTTCTAGGGCCCTTGGAGACCTCACTGGGATCAAG 643
| |||||||| ||||||||||| | | | |||||||| ||| | ||||| || |||
Sbjct 489 A-GAAGACTTGCGTACACCATGACCCGGCCCGAGCCCTTGGTGACTTAACTGGAATTAAG 547
Query 644 AAACACTAT-AGCCGCAAACACGGTGAAAAGAAGTGGAAGTGCGAAAAGTGTTCTAAGAA 702
|| || | | ||| | ||||| ||||||||||||||||| || || |||||||| |||||
Sbjct 548 AAGCA-TTTCAGCAGGAAACATGGTGAAAAGAAGTGGAAATGTGACAAGTGTTCCAAGAA 606
Query 703 ATACGCTGTTCA-GTCTGATTGGAAGGCACAT-GCGAAAACTTGTGGTACTCGCGAGTAT 760
||| |||| ||| ||| |||||||| || ||| || || | |||||||||| || ||
Sbjct 607 ATATGCTG-TCATGTCCGATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAAAGAATAC 664
Query 761 AAATGTGACTGTGGCACGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTC 820
| |||||||||||| || | || |||||||||||||||||||||||||||||||| |||
Sbjct 665 AGATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTC 724
Query 821 TGCGACGCATT-GACTGAAGA 840
|| ||||| || | |||||||
Sbjct 725 TGTGACGCTTTAG-CTGAAGA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99397079100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5