BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487085 Length=2006 Score E Sequences producing significant alignments: (Bits) Value AT5G03150.1 | Symbols: JKD | C2H2-like zinc finger protein | ch... 3175 0.0 AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:... 309 7e-83 > AT5G03150.1 | Symbols: JKD | C2H2-like zinc finger protein | chr5:745644-749007 FORWARD LENGTH=2046 Length=2046 Score = 3175 bits (1719), Expect = 0.0 Identities = 1921/2016 (95%), Gaps = 23/2016 (1%) Strand=Plus/Plus Query 1 aaaaaaaCTTATATGCTCTTGTTCTTGTTCTTCTTCTCCCCTCTA-CAAATTAAACCCTA 59 ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| Sbjct 1 AAAAAAACTTATATGCTCTTGTTCTTGTTCTTCTTCTCCCCTC-AGCATATTAAACCCTA 59 Query 60 ATTAACTATCTCTTTTGTTTGTATACTGTTCTAAACCTCCTGATCATCTTCTTGTTTTCT 119 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 60 ATTAACTATCTCTTTTGTTTGTATACTGTTATAAACCTCCTGATCATCTTCTTGTTTTCT 119 Query 120 TGCAAGATTTCAT---aaaaaaaCAAAACCCAGCTGTTTTTGTTCTTGTTCTTTAGCTCC 176 |||||||||| || |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 120 TGCAAGATTTTATAAAAAAAAAACAAAACCCAGCTGTTCTTGTTCTTGTTCTTTAGCTCC 179 Query 177 GATCCGTTTCAACTTAAATCACAGATATGCAGATGATTCCAGGAGATCCATTTTCTATTT 236 ||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GATCCGTTTTAAATTAAAACACAGATATGCAGATGATTCCAGGAGATCCATTTTCTATTT 239 Query 237 CATCCTCCATGGGAGGGTTTGTTCATCAAGAAACACACCTTCATCATCCTCAGCAGCAGA 296 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 240 CATCCTCCATGGGAGGGTTTGTTCATCAAGAAACACACCTTCATCATCTTCAGCAGCAGA 299 Query 297 TCCCTGACCTCAACCCTAATTCTAACCCTAACCCAAATGTGAAACCAAACTCTTCATCAG 356 |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 300 TCCCTGACCTTAACCCTAATTCTAACCCTAACCCAAATGCGAAACCAAACTCTTCATCAG 359 Query 357 CCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTAT 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 360 CCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCTCTAT 419 Query 417 CGCCAACAACACTCATGGCGACAAACAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTC 476 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 420 CGCCAACAACACTCATGGCAACAAACAGATTCGTGTGCGAGATCTGCAACAAAGGGTTTC 479 Query 477 AAAGGGATCAGAACTTACAACTCCATCGCCGTGGCCACAATCTTCCATGGAAGCTGAAGC 536 ||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 480 AAAGGGACCAGAATTTACAACTACATCGCCGTGGCCACAACCTTCCATGGAAGCTAAAGC 539 Query 537 AACGATCCAAACAAGAGGTGATAAAAAAGAAAGTATACATATGCCCTATCAAGACTTGTG 596 |||| ||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| Sbjct 540 AACGGTCCAAACAAGAAGTGATAAAGAAGAAAGTATACATATGTCCTATCAAGACTTGTG 599 Query 597 TACACCATGATGCTTCTAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTATAGCC 656 ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| Sbjct 600 TACACCATGATGCCTCCAGGGCCCTTGGAGACCTCACTGGGATCAAGAAACACTACAGCC 659 Query 657 GCAAACACGGTGAAAAGAAGTGGAAGTGCGAAAAGTGTTCTAAGAAATACGCTGTTCAGT 716 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 660 GCAAACACGGTGAAAAGAAGTGGAAGTGTGAAAAGTGTTCTAAGAAATACGCTGTTCAGT 719 Query 717 CTGATTGGAAGGCACATGCGAAAACTTGTGGTACTCGCGAGTATAAATGTGACTGTGGCA 776 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 720 CTGATTGGAAGGCACATGCGAAAACTTGTGGTACTCGTGAGTATAAATGTGACTGTGGCA 779 Query 777 CGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTGACTG 836 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 780 CGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTCTGCGACGCATTAACTG 839 Query 837 AAGAAGGTGCGAGGATGAGTTCACTAAGTAGTAACATTCCTGTGATCTCTACGACGAATC 896 | ||||| ||||||||||||||||| |||| |||| ||| ||||||||||||||||||| Sbjct 840 AGGAAGGAGCGAGGATGAGTTCACTTAGTAACAACAATCCGGTGATCTCTACGACGAATC 899 Query 897 TGAATTTTGGAAACGATTCAAATGTTATGAATAATCCAAATCTTCCTCATGGATTTGTTC 956 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | Sbjct 900 TGAATTTTGGAAATGAGTCAAATGTTATGAATAATCCAAATCTTCCTCATGGATTTGTAC 959 Query 957 ACCGAGGAGTTCATCATCCCGACATTAATGCTGCTATCTCTCAATTCGGTTTAGGGTTTG 1016 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 960 ACCGAGGAGTTCATCATCCCGACATTAATGCTGCTATCTCTCAATTCGGTCTAGGGTTTG 1019 Query 1017 GACATGACCTAAGTGCAATGCATGCGCAAGGTCTATCCGAGATGGTTCAAATGGCCTCCA 1076 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GACATGACCTAAGTGCAATGCATGCGCAAGGTCTATCCGAGATGGTTCAAATGGCCTCCA 1079 Query 1077 CCGGCAACCACCACCCCTTCCCGTCGTCATCATCATCCCTCCCTGATTTCTCCGGCCACC 1136 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 CCGGCAACCACCACCTCTTCCCGTCGTCATCATCATCCCTCCCTGATTTCTCCGGCCACC 1139 Query 1137 ACCAATTCCAAATTCCAACGACTTCCACAAACCCTAATCTCACCTTATCATCATCCTCAA 1196 |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| Sbjct 1140 ACCAATTCCAAATTCCAATGACTTCCACAAACCCTAGTCTCACCTTATCATCATCCTCAA 1199 Query 1197 CATCACAACAAACATCTGCTTCTCTACAACACCAAACCCTAAAAGACTCATCTTTCTCAC 1256 ||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1200 CATCACAACAAACCTCAGCTTCACTACAACACCAAACCCTAAAAGACTCATCTTTCTCAC 1259 Query 1257 CACTCTTCTCCTCTTCCTCCGAAAACAAACAAAACAAGCCTCTGTCTCCAATGTCTGCAA 1316 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1260 CACTCTTCTCCTCTTCCTCCGAAAACAAACAAAACAAGCCTCTCTCTCCAATGTCTGCCA 1319 Query 1317 CAGCTCTCTTACAAAAAGCTGCACAAATGGGCTCTACTCGAAGCAATTCCACCACCGCTC 1376 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 1320 CAGCTCTCTTACAAAAAGCTGCACAAATGGGCTCTACTAGAAGCAATTCCTCCACCGCTC 1379 Query 1377 CGTCCTTCTTCGCAGGCCCAACAATGACATCATCCTCAGCCACCGCTTctcctcctcctc 1436 |||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1380 CGTCATTCTTCGCCGGCCCAACAATGACATCCTCCTCGGCCACCGCTTCTCCTCCTCCT- 1438 Query 1437 ctcctAGATCGTCTTCACCAATGATGATCCAACAACAACTAAACAACTTCAACACCAATG 1496 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 -----AGATCGTCTTCTCCAATGATGATCCAACAACAACTAAACAACTTCAACACCAATG 1493 Query 1497 TCTCAAGAGAGAATCCCAATCTTGCTCCCCCTCCTCTTAGTGGTGTCACCACTAGTAGTG 1556 ||| ||||||||||| |||| |||||| |||||||||||||||||| |||||||||||| Sbjct 1494 TCTTAAGAGAGAATCATAATCGTGCTCCTCCTCCTCTTAGTGGTGTCTCCACTAGTAGTG 1553 Query 1557 TGGATAATAATCCCTTTCAATCGAACCGGTCGGGTCTAAACCTGGTTCAACAAATGGGTC 1616 |||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||| Sbjct 1554 TGGATAATAATCCCTTTCAATCGAACCGATCGGGTCTAAACCCGGCTCAACAGATGGGTC 1613 Query 1617 TAACCCGGGATTTTCTTGGAGTGAGCAACGAGCATCACCCTCACCAAACGGGTCGTCGTC 1676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1614 TAACCCGGGATTTTCTTGGAGTGAGCAACGAGCATCACCCTCACCAAACGGGTCGTCGTC 1673 Query 1677 CCTTTTTGCCTCAAGAACTCGCAAGGTTTGCTCCATTGGGTTGATTATGTGTTTAATTAA 1736 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1674 CGTTTTTGCCTCAAGAACTCGCAAGGTTTGCTCCATTGGGTTGATTATGTGTTTAATTAG 1733 Query 1737 ATACTGTGTATGGGCCGGGGGACAAGATTTTGGGTTTAATTAGGATTGGAAGTTCCTTTG 1796 |||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1734 GTACTGTGT--GGG--GGGG-ACAAGATTTTGGGTTTAATTAGGATTGGAAGTTCCTTTG 1788 Query 1797 AGGAGACAGGTCTAATTAAGAACCGTACCCCCTTGTGAAGCGGTCTGAATGTGGGGACAA 1856 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1789 AGGAGACAAGTCTAATTAAGAACCGTACCCCCTTGTGAAGCGGTCGGAATGTGGGGACAA 1848 Query 1857 AGGTTGACAAGACATCATCATATCAATTTACATTGAATGTTATGTACTTTT--ACTATGT 1914 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1849 AGGTTGACAAGACATCATCATATCAATTTACATTGAATGTTATGTACTTTTTTACTATGT 1908 Query 1915 TTTTGATTATCGCCAGTCACATAATATATACCA---TGACATGCATGGATATGTATTTCC 1971 || |||||||||| | ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1909 TTATGATTATCGCAATTCACATAATATATACCACCATGACATGCATGGATATGTATTTCC 1968 Query 1972 GACGTTGTCGTTTTGTAAATGTTAAttt-ttttttC 2006 ||| ||||||||||||||||||| ||| ||||||| Sbjct 1969 GACATTGTCGTTTTGTAAATGTTG-TTTATTTTTTC 2003 > AT3G45260.1 | Symbols: | C2H2-like zinc finger protein | chr3:16596381-16598698 REVERSE LENGTH=1885 Length=1885 Score = 309 bits (167), Expect = 7e-83 Identities = 394/501 (79%), Gaps = 26/501 (5%) Strand=Plus/Plus Query 353 TCAGCCAAGAAGAAGAGAAATCAACCTGGCACTCCAGATCCAGATGCTGATGTCATCGCT 412 |||||||||| ||||||||||| || || | ||||||||||||||| || ||||||||| Sbjct 257 TCAGCCAAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCGCT 316 Query 413 CTATCGCC-AACAACACTCATGGCGAC-AAACAGATTCGTGTGCGAGATCTGCAACAAAG 470 ||||| || ||| | |||||| | || || | ||||| | |||||| | |||||||||| Sbjct 317 CTATCACCAAAC-TCCCTCATGACAACTAATC-GATTCATCTGCGAGGTTTGCAACAAAG 374 Query 471 GGTTTCAA-AGGGATCAGAA-CTTACAACTCCATCGCCGTGGCCACAATCTTCCATGGAA 528 | ||| || || || ||||| ||| || || || || | ||||| || ||||||||||| Sbjct 375 GATTT-AAGAGAGACCAGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAA 432 Query 529 GCTGAAGC-AACGATCCAAACAA-GAGGTGA-T-AAAAAAGAAAGTATACATATG-CCCT 583 ||| |||| || || ||||||| || | | | || ||| ||||| ||||| || || Sbjct 433 GCTAAAGCAAAGGA--CAAACAAGGA-GCAAGTGAAGAAA-AAAGTGTACATCTGTCCAG 488 Query 584 ATCAAGACTTGTGTACACCATGATGCTTCTAGGGCCCTTGGAGACCTCACTGGGATCAAG 643 | |||||||| ||||||||||| | | | |||||||| ||| | ||||| || ||| Sbjct 489 A-GAAGACTTGCGTACACCATGACCCGGCCCGAGCCCTTGGTGACTTAACTGGAATTAAG 547 Query 644 AAACACTAT-AGCCGCAAACACGGTGAAAAGAAGTGGAAGTGCGAAAAGTGTTCTAAGAA 702 || || | | ||| | ||||| ||||||||||||||||| || || |||||||| ||||| Sbjct 548 AAGCA-TTTCAGCAGGAAACATGGTGAAAAGAAGTGGAAATGTGACAAGTGTTCCAAGAA 606 Query 703 ATACGCTGTTCA-GTCTGATTGGAAGGCACAT-GCGAAAACTTGTGGTACTCGCGAGTAT 760 ||| |||| ||| ||| |||||||| || ||| || || | |||||||||| || || Sbjct 607 ATATGCTG-TCATGTCCGATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAAAGAATAC 664 Query 761 AAATGTGACTGTGGCACGTTGTTCTCCAGGAAAGATAGTTTCATCACACATAGAGCGTTC 820 | |||||||||||| || | || |||||||||||||||||||||||||||||||| ||| Sbjct 665 AGATGTGACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTC 724 Query 821 TGCGACGCATT-GACTGAAGA 840 || ||||| || | ||||||| Sbjct 725 TGTGACGCTTTAG-CTGAAGA 744 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99397079100 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5