BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487087
Length=900
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03170.1 | Symbols: FLA11, ATFLA11 | FASCICLIN-like arabinog... 1373 0.0
> AT5G03170.1 | Symbols: FLA11, ATFLA11 | FASCICLIN-like arabinogalactan-protein
11 | chr5:752750-753657 REVERSE LENGTH=908
Length=908
Score = 1373 bits (743), Expect = 0.0
Identities = 849/901 (94%), Gaps = 4/901 (0%)
Strand=Plus/Plus
Query 1 ACAATAACTACAACAATGGCTACTTCAAGAACATTCA-TTTCTTCTAATCTTTTCATCTT 59
|||| |||||||||||||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 5 ACAACAACTACAACAATGGCTACTTCAAGAACATTCATTTTC-TCTAATCTCTTCATCTT 63
Query 60 CTTCCTCATCGTGGCTACTACCAATGGTCAGGCTCCAGCTCCAGGCCCTTCAGGTCCAAC 119
||||||| | | || ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 64 CTTCCTCGTTATAGCCACTACTTATGGTCAGGCTCCAGCTCCAGGCCCTTCAGGTCCAAC 123
Query 120 CAACATAACCGCAATCCTAGAAAAGGCGGGTCAATTCACCTTGTTCATAAGACTTCTTAA 179
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 124 GAACATAACCGCAATCCTAGAAAAGGCTGGTCAATTCACATTGTTCATAAGACTTCTTAA 183
Query 180 AAGCACCCAAGCCTCAGACCAAATCAACACTCAGCTCAATTCTTCCTCGAGTAATGGCTT 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 AAGCACTCAAGCCTCAGACCAAATCAACACTCAGCTCAATTCTTCCTCGAGTAATGGCTT 243
Query 240 AACCGTGTTTGCCCCGACTGATAACGCCTTCAACAGCCTCAAATCCGGAACCTTGAACTC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 244 AACCGTGTTTGCCCCGACTGATAACGCCTTCAACAGCCTCAAATCCGGAACCTTAAACTC 303
Query 300 ATTGTCTGACCAACAAAAAGTTCAGCTTGTTCAGTTCCATGTCCTACCTACACTCATTAC 359
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 304 ATTGTCTGACCAACAAAAAGTTCAGCTTGTTCAGTTCCATGTCTTACCTACACTCATAAC 363
Query 360 CATGCCTCAGTTTCAAACCGTTAGTAACCCCTTACGCACGCAAGCTGGTGATGGGCAAAA 419
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 364 CATGCCTCAGTTTCAAACCGTTAGTAACCCTTTACGCACGCAAGCTGGAGATGGCCAAAA 423
Query 420 CGGTAAATTCCCTCTTAACATCACTAGCTCCGGTAACCAAGTTAACATCACCACCGGAGT 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 424 CGGTAAATTCCCTCTTAACATCACTAGCTCCGGTAACCAAGTTAACATCACCACTGGAGT 483
Query 480 TGTCAGCGCCACCGTGGCTAACTCTGTCTACAGCGATAAGCAGCTCGCTGTTTATCAGGT 539
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 484 TGTCAGCGCCACCGTGGCTAACTCTGTCTACAGCGATAAGCAGCTGGCCGTTTATCAGGT 543
Query 540 CGATCAAGTTTTGTTGCCATTAGCCATGTTTGGATCAAGCGCGGCTCCTGCTCCGGCGCC 599
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 544 TGATCAAGTTTTGCTGCCATTAGCCATGTTTGGATCAAGCGTGGCTCCTGCTCCGGCCCC 603
Query 600 TGAGAAAGGCGGCTCTGTTTCAAAAGGCTCAGCTTCCGGTGGCGATGATGGAGGAGGTTC 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 604 TGAGAAAGGCGGCTCTGTTTCAAAAGGCTCAGCTTCCGGTGGCGATGATGGAGGAGATTC 663
Query 660 TACTGATTCATCTGATGCAGAGAGAACTCGATTCGGGTTTGGGGTCAGAATCGCTATCGT 719
|||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||| |||
Sbjct 664 TACTGATTCATCTGATGCAGAGAGGACTGGATTCGGGTTTGGGATCAGAATCACTACCGT 723
Query 720 CGCAGCCATTGCTGCTGCTTCTTCTCTGTCGATATAACTCGAGAGAGAGCTTTCCTTGAG 779
||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 724 TGCAGCCATTGCTGCTTCTTCTTCTCTGTGGATATAACTCGAGAGAGAGCTTTTCTTGAG 783
Query 780 TCTCCACATTGGGAATTTTAATAACAACGAGAGCTTTAAAATTT-GTCGTACATTGAGAT 838
|||||||||| |||||||||| || |||||||||||||| ||| || |||| |||||||
Sbjct 784 TCTCCACATTTGGAATTTTAAGAATAACGAGAGCTTTAAGTTTTTGTTGTACTTTGAGAT 843
Query 839 TGTGTTATAGATGGTGTTGTTATGTGTTATTGTTTTGATTAAGATTGCACAAAACTTTTT 898
||| ||||||||| |||| ||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 844 TGTTTTATAGATG-TGTTATTACGTGTGATTGTTTTGATTAAGATTGCACACAACTTTTT 902
Query 899 T 899
|
Sbjct 903 T 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43954878625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5