BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487088
Length=1690
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03180.2 | Symbols: | RING/U-box superfamily protein | chr5... 2381 0.0
AT3G09760.1 | Symbols: | RING/U-box superfamily protein | chr3... 435 9e-121
> AT5G03180.2 | Symbols: | RING/U-box superfamily protein | chr5:754016-756494
REVERSE LENGTH=1669
Length=1669
Score = 2381 bits (1289), Expect = 0.0
Identities = 1478/1566 (94%), Gaps = 25/1566 (2%)
Strand=Plus/Plus
Query 143 AAATTAATCTCAAAGATTGATACTTTGTTTTCCGGAGATTCTTCTTTTACTAT-ACTGTT 201
||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 7 AAATTAATCCCAAAGATTGATACTTTGTTTTCCTGAGATTCTTCTTTTACT-TCACTGTT 65
Query 202 TCTGGGTTTTGTTTGAATTTGATGATGATGGATGATAAAGATAAACCTCGCGAAGTAGTA 261
||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 66 TCTGGGTTTTG--T-AATTTGATGGTGATGGATGATAAAGATAAATATCGCGAAGTAGTA 122
Query 262 GAACATAGGTCCCATGAAGATATTTCTCCAGCTCTAATGGTTGGAGATTCTACTGAGATA 321
|||||| |||| |||| || |||||||||||||||||||||||||||||||||||||
Sbjct 123 GAACATTGGTCTTGCGAAGGTACTTCTCCAGCTCTAATGGTTGGAGATTCTACTGAGATA 182
Query 322 ACAGAAATGCTATCACCAAGCCAACACCAACGATGGCGAGGTCTTGTGTTAGATATACAA 381
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 183 ACAGAAATGCTATCACCGAGCCAACATCAACGATGGCGAGGCCTTGTGTTAGATATACAA 242
Query 382 TCGAGAGAAGCTCATGGCGATTTCTTGAGAGCAAATGGTTCCTTAATTCATAGCCCTGTT 441
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 243 TCGAGAGAAGCTCATGGCGATTTCTTGAGAGCAAATGGTTCCTTAATTCATAGCCCCGTT 302
Query 442 TCCAAAAGGTTCAAGTTTTCTCCAATGTCAAGCCCTAGAATTGGGAGACGTGTTGGCTCC 501
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||
Sbjct 303 TCCAAAAGGTTCAAGTTTTCTCCAATGTCCAGCCCTAGAACTGGGAGACGTGTTGGATCA 362
Query 502 ATGAGTCCTTCCTCGTCAAGAAACAGAACGAATCTCCTAA-ACTTT-AAAAACAGGAACC 559
|||||||||||||||||||||||||||||||| || || | ||| |||||||||||||
Sbjct 363 ATGAGTCCTTCCTCGTCAAGAAACAGAACGAA--TCAGAAGAATTTCAAAAACAGGAACC 420
Query 560 ACAATGCAGATATTGAGGAAGGTGTTGTGTCTCCTTCAGGAGATGGTACG-GATAAATCT 618
||| ||||||||||||||||||||||||||| |||| ||||||||||| | ||||| |||
Sbjct 421 ACAGTGCAGATATTGAGGAAGGTGTTGTGTCCCCTTTAGGAGATGGTA-GTGATAAGTCT 479
Query 619 TATATTCCAAGAACATGGTCTCTCACTAATCTCTTAGCTCCTAGAAAATATAAGAAGACA 678
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 TATATTCCAAGAACATGGTCTCTCACTAATCTCTTAGCTCCTAGAAAATCTAAGAAGACA 539
Query 679 GAGTCTTTTATAACTCACTCAAACCCTGAGTCCATGAACGGGAGGTATGCGGTTGAGGTT 738
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 GAGTCTTTTATAACTCACTCAAACCCTGAGTCCATGAACGGGAGGTATGCCGTTGAGGTT 599
Query 739 GATCCGGTTACATCCATGAAAGGGGAGCGTTTACTGCCTATTCGTCGTTCACGCTCTGTC 798
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 GATCCGGTTACATCCATGAAAGGGGAGCGTTTACTGCCTATTCGTCGTACACGCTCTGTC 659
Query 799 CCTACATTCTTCAACAAAGATGGAAGTGTAAAGCAGTCAGGTGTTTTCCGCGTGATTCCT 858
|| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 660 CCCACATTCTTCAACAAAGATGGAAGTGTAAAGCCGTCAAGTGTTTTCCGCGTGATTCCT 719
Query 859 ACTCCATCTCGTGGGGATGAGAAGAGTCTAGAGATGATGCAGGCATC------GA--AAA 910
||||| |||||||||||||||||||| |||||||||| ||||||||| || |||
Sbjct 720 ACTCCGTCTCGTGGGGATGAGAAGAGACTAGAGATGACGCAGGCATCGAAATTGAGTAAA 779
Query 911 -T-GA--ATGAACATGATGATGGCGGAGAAGATGTTCCTgaagaagaagctgtgtgtaga 966
| | ||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCCACGATGAAAATGATGATGGTGGAGAAGATGTTCCTGAAGAAGAAGCTGTGTGTAGA 839
Query 967 atctgtatggttgaaatggaagaagaagaagaagCTTTTAAGATGGAATGTATGTGCAAA 1026
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 840 ATCTGTATGGTTGAAATGGAAGAAGATGAAGAAGCTTTTAAGATGGAATGTATGTGCAAA 899
Query 1027 GGGGAATTGGCTCTTGCCCACAAAACGTGCACGATCAAATGGTTTACAATTAAAGGGAAC 1086
|||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 900 GGGGAACTAGCTCTTGCCCACAAAACGTGCACTATCAAATGGTTTACAATTAAAGGGAAC 959
Query 1087 ATAACATGTGATGTATGTAAGCAAGAGGTGAAAAATCTCCCGGTTACCCTTCTCCGTGTG 1146
|||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 960 ATAACATGTGATGTGTGTAAGCAAGAGGTGAGAAATCTCCCGGTTACCCTTCTACGTGTG 1019
Query 1147 CAGGATTCTCAAGACCGTTCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAAT 1206
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CAGGATTCTCAAAACCGTTCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAAT 1079
Query 1207 GAATGGCAAGATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTT 1266
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTATGGCAAGATATTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTT 1139
Query 1267 GAGCAGCTTTTGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCT 1326
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GAACAGCTTCTGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCT 1199
Query 1327 TGCATTATCGGTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGAACTATGTG 1386
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGCATTATCGGTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGAACTATGTA 1259
Query 1387 TGGATCTACGCAACCATTCAGTTCGGTTTTGTGGTCCTTTTCGCTCATCTTTTCTACACA 1446
||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1260 TGGATCTACGCCACCGTTCAGTTCGGTTTTGTGGTCCTTTTCGCTCAGCTTTTCTACAGA 1319
Query 1447 GTTGTAAGATTTGATGTTAAGCAGCCGGTAATGTGCATTGTCTTAGCCACTATGATCGGA 1506
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTTGTAAGATTTGATGTGAAGCAGCCGGTAATGTGCATTGTCTTAGCCACTATGATCGGA 1379
Query 1507 TTTGGACTCACCATGACCGGCACAACAGCTATTAACGAGTATTTGAAATGGAGGAGAAGC 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TTTGGACTCACCATGACCGGCACAACAGCTATTAACGAGTATTTGAAATGGAGGAGAAGC 1439
Query 1567 AATTCCCACCAGCCAGAAGAGCCAGCAAGCACTCTGGTGGTTTGACAGCAGCGTAGATCT 1626
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1440 AATTCCCACCTGCCAGAAGAGCCAGCAAGTACTCAGGTGGTTTGACAGCAGCGTAGATCT 1499
Query 1627 T--GAGTGAAGCTAGAGTCCCTAAAGGGTTGGATCGGTTTTCGATCAACCGGTCCGGATT 1684
| ||||||||||||||||||||||||||||||||||||||| || |||||||| |||||
Sbjct 1500 TTTGAGTGAAGCTAGAGTCCCTAAAGGGTTGGATCGGTTTTCAATTAACCGGTCGGGATT 1559
Query 1685 CGGTTT 1690
||||||
Sbjct 1560 CGGTTT 1565
> AT3G09760.1 | Symbols: | RING/U-box superfamily protein | chr3:2992654-2995634
REVERSE LENGTH=1980
Length=1980
Score = 435 bits (235), Expect = 9e-121
Identities = 691/901 (77%), Gaps = 72/901 (8%)
Strand=Plus/Plus
Query 687 TATAACTCACTCAAACCCTGAGTCCA-TGAACGGGAGGTATGCGGTTGAGGTTGATCCGG 745
|||| |||||||||| |||||||||| | |||||| | || ||| ||||||| |
Sbjct 726 TATAGCTCACTCAAATCCTGAGTCCACT-CACGGGA-G-AT----TTGCCGTTGATCTAG 778
Query 746 TTACATCCATG-AAAGGGGAGCGTTTACTGCCTATTCGTCGTTCACGCTCTGTCCCTA-C 803
|||| |||| | ||| || || | ||||||||| | ||||||||||||||||| | |
Sbjct 779 TTACTTCCACGAAAAAAGG-GCCTCCACTGCCTATCCACCGTTCACGCTCTGTCCC-AGC 836
Query 804 ATTCTTCAACAAAGATGGAAGTGTAAA-GCAGTCAGGTGTTTTCCGCGTGATTCCTACTC 862
| |||||||||||||||||| ||| ||| | |||||||||||| |||||||| ||||
Sbjct 837 A---TTCAACAAAGATGGAAGT-CAAAGGCAATTAGGTGTTTTCCGGGTGATTCCAACTC 892
Query 863 CATCTCGTGGGGATGAGAAGAGTCTAGAGATGATGCAGGC-ATCGAAAATGAATGA-AC- 919
|| | | | | | | | ||| | || | | || ||| | || || |
Sbjct 893 CA-AACAT---G-TCTCCA-A--CCAGA-A--AT--A--CTAT-TAAACTTAACGACGCG 936
Query 920 -ATGATGATGGCGGAGAAGATGTTCCTgaagaagaagctgtgtgtagaatctgtatggtt 978
||| |||||| | |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 937 AATGTTGATGGAGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTGTAGAATCTGCCTTGTA 996
Query 979 gaaatggaagaagaagaagaagCTTTTAAGATGGAATGTATGTGCAAAGGGGAATTGGCT 1038
||| ||| |||||| |||||| || |||||||||||| |||| | ||||||| | |||
Sbjct 997 GAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTTTGTGTAGAGGGGAACTAGCT 1056
Query 1039 CTTGCCCACAAA-ACGTGCACGATCAAATGGTTTACAATTAAAGGGAACATAACATGTGA 1097
|||||||||||| | || || ||||||||||| || |||||||| |||| |||||||||
Sbjct 1057 CTTGCCCACAAAGA-ATGTACAATCAAATGGTTCACCATTAAAGGAAACAGAACATGTGA 1115
Query 1098 TGTATGTAAGCAAGAGGTGAAAAATCTCCCGGTTACCCTTCTCCGTGTGCAGGATTCTCA 1157
||| || ||||||||||| | |||||||| || |||||||| || ||||| ||||||
Sbjct 1116 TGTGTGCAAGCAAGAGGTTCAGAATCTCCCTGTGACCCTTCTTCGCATGCAGAATTCTCG 1175
Query 1158 AGACCGT-TCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAATGAATGGCAAG 1216
| || | | |||| ||| || |||| | ||| | || | | |||||| |
Sbjct 1176 GGGTAGTAT-TGGAGC-TCCA--GACGCCGAGGCTGCACACTACAGT--T-TATGGCAGG 1228
Query 1217 ATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTTGAGCAGCTTT 1276
|||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1229 ATGTTCCAATTCTTGTGATTGTAAGCATGCTTGCATACTTCTGTTTTCTCGAGCAGCTTC 1288
Query 1277 TGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCTTGCATTATCG 1336
|| ||| | | ||| ||||| ||||| ||||| | ||||||| ||||| ||| || | |
Sbjct 1289 TGCTTACAAAAATGCAATCTGGCGCCATTGCAGTTTCTTTACCATTCTCGTGCGTTCTTG 1348
Query 1337 GTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGA-ACTATGTGTGGATCTAC 1395
||||| |||| || |||| |||||||||||||| ||||| | ||||| ||||| |||
Sbjct 1349 GTCTTTTTGCTTCGATGACGGCAACAACAATGGTGCCGAAGAGA-TATGTCTGGATTTAC 1407
Query 1396 GCAACCATTCAGTTCGGTTTTGTGGTCCTTTTCGCTCATC-TTTTCTACACAGTTGTAAG 1454
|| || | |||||||||| |||| || ||||| |||| | |||||| |||| ||| |
Sbjct 1408 GCTACAACTCAGTTCGGTCTTGTTGTTTTTTTCTCTCA-CATTTTCTTCACA-TTG---G 1462
Query 1455 ATTTG-ATGTTAAGCAGCCGGTAATGTG-C-ATTGTCTTAGCCACTAT-GATCGGATTTG 1510
|| | ||| |||||||| |||| | ||| ||||||||||||| | | || ||||
Sbjct 1463 -TTCGCATG-----CAGCCGGT--TGTGGCCATTCTCTTAGCCACTATCGTTGGG-TTTG 1513
Query 1511 GACTCACCATGACCGGCACAACAGCTATTAA-CGAGTATTT-GAAATGGAGGAGAAGCAA 1568
|||||||||||| ||| ||||||| ||| | ||||| ||| ||||||||||||||||||
Sbjct 1514 GACTCACCATGAGCGGTACAACAGGTAT-AGTCGAGT-TTTCGAAATGGAGGAGAAGCAA 1571
Query 1569 T 1569
|
Sbjct 1572 T 1572
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83533706880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5