BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487088 Length=1690 Score E Sequences producing significant alignments: (Bits) Value AT5G03180.2 | Symbols: | RING/U-box superfamily protein | chr5... 2381 0.0 AT3G09760.1 | Symbols: | RING/U-box superfamily protein | chr3... 435 9e-121 > AT5G03180.2 | Symbols: | RING/U-box superfamily protein | chr5:754016-756494 REVERSE LENGTH=1669 Length=1669 Score = 2381 bits (1289), Expect = 0.0 Identities = 1478/1566 (94%), Gaps = 25/1566 (2%) Strand=Plus/Plus Query 143 AAATTAATCTCAAAGATTGATACTTTGTTTTCCGGAGATTCTTCTTTTACTAT-ACTGTT 201 ||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct 7 AAATTAATCCCAAAGATTGATACTTTGTTTTCCTGAGATTCTTCTTTTACT-TCACTGTT 65 Query 202 TCTGGGTTTTGTTTGAATTTGATGATGATGGATGATAAAGATAAACCTCGCGAAGTAGTA 261 ||||||||||| | ||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 66 TCTGGGTTTTG--T-AATTTGATGGTGATGGATGATAAAGATAAATATCGCGAAGTAGTA 122 Query 262 GAACATAGGTCCCATGAAGATATTTCTCCAGCTCTAATGGTTGGAGATTCTACTGAGATA 321 |||||| |||| |||| || ||||||||||||||||||||||||||||||||||||| Sbjct 123 GAACATTGGTCTTGCGAAGGTACTTCTCCAGCTCTAATGGTTGGAGATTCTACTGAGATA 182 Query 322 ACAGAAATGCTATCACCAAGCCAACACCAACGATGGCGAGGTCTTGTGTTAGATATACAA 381 ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||| Sbjct 183 ACAGAAATGCTATCACCGAGCCAACATCAACGATGGCGAGGCCTTGTGTTAGATATACAA 242 Query 382 TCGAGAGAAGCTCATGGCGATTTCTTGAGAGCAAATGGTTCCTTAATTCATAGCCCTGTT 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 243 TCGAGAGAAGCTCATGGCGATTTCTTGAGAGCAAATGGTTCCTTAATTCATAGCCCCGTT 302 Query 442 TCCAAAAGGTTCAAGTTTTCTCCAATGTCAAGCCCTAGAATTGGGAGACGTGTTGGCTCC 501 ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| || Sbjct 303 TCCAAAAGGTTCAAGTTTTCTCCAATGTCCAGCCCTAGAACTGGGAGACGTGTTGGATCA 362 Query 502 ATGAGTCCTTCCTCGTCAAGAAACAGAACGAATCTCCTAA-ACTTT-AAAAACAGGAACC 559 |||||||||||||||||||||||||||||||| || || | ||| ||||||||||||| Sbjct 363 ATGAGTCCTTCCTCGTCAAGAAACAGAACGAA--TCAGAAGAATTTCAAAAACAGGAACC 420 Query 560 ACAATGCAGATATTGAGGAAGGTGTTGTGTCTCCTTCAGGAGATGGTACG-GATAAATCT 618 ||| ||||||||||||||||||||||||||| |||| ||||||||||| | ||||| ||| Sbjct 421 ACAGTGCAGATATTGAGGAAGGTGTTGTGTCCCCTTTAGGAGATGGTA-GTGATAAGTCT 479 Query 619 TATATTCCAAGAACATGGTCTCTCACTAATCTCTTAGCTCCTAGAAAATATAAGAAGACA 678 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 480 TATATTCCAAGAACATGGTCTCTCACTAATCTCTTAGCTCCTAGAAAATCTAAGAAGACA 539 Query 679 GAGTCTTTTATAACTCACTCAAACCCTGAGTCCATGAACGGGAGGTATGCGGTTGAGGTT 738 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 540 GAGTCTTTTATAACTCACTCAAACCCTGAGTCCATGAACGGGAGGTATGCCGTTGAGGTT 599 Query 739 GATCCGGTTACATCCATGAAAGGGGAGCGTTTACTGCCTATTCGTCGTTCACGCTCTGTC 798 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 600 GATCCGGTTACATCCATGAAAGGGGAGCGTTTACTGCCTATTCGTCGTACACGCTCTGTC 659 Query 799 CCTACATTCTTCAACAAAGATGGAAGTGTAAAGCAGTCAGGTGTTTTCCGCGTGATTCCT 858 || ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 660 CCCACATTCTTCAACAAAGATGGAAGTGTAAAGCCGTCAAGTGTTTTCCGCGTGATTCCT 719 Query 859 ACTCCATCTCGTGGGGATGAGAAGAGTCTAGAGATGATGCAGGCATC------GA--AAA 910 ||||| |||||||||||||||||||| |||||||||| ||||||||| || ||| Sbjct 720 ACTCCGTCTCGTGGGGATGAGAAGAGACTAGAGATGACGCAGGCATCGAAATTGAGTAAA 779 Query 911 -T-GA--ATGAACATGATGATGGCGGAGAAGATGTTCCTgaagaagaagctgtgtgtaga 966 | | ||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 780 CTCCACGATGAAAATGATGATGGTGGAGAAGATGTTCCTGAAGAAGAAGCTGTGTGTAGA 839 Query 967 atctgtatggttgaaatggaagaagaagaagaagCTTTTAAGATGGAATGTATGTGCAAA 1026 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 840 ATCTGTATGGTTGAAATGGAAGAAGATGAAGAAGCTTTTAAGATGGAATGTATGTGCAAA 899 Query 1027 GGGGAATTGGCTCTTGCCCACAAAACGTGCACGATCAAATGGTTTACAATTAAAGGGAAC 1086 |||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 900 GGGGAACTAGCTCTTGCCCACAAAACGTGCACTATCAAATGGTTTACAATTAAAGGGAAC 959 Query 1087 ATAACATGTGATGTATGTAAGCAAGAGGTGAAAAATCTCCCGGTTACCCTTCTCCGTGTG 1146 |||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 960 ATAACATGTGATGTGTGTAAGCAAGAGGTGAGAAATCTCCCGGTTACCCTTCTACGTGTG 1019 Query 1147 CAGGATTCTCAAGACCGTTCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAAT 1206 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 CAGGATTCTCAAAACCGTTCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAAT 1079 Query 1207 GAATGGCAAGATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTT 1266 | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 GTATGGCAAGATATTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTT 1139 Query 1267 GAGCAGCTTTTGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCT 1326 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 GAACAGCTTCTGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCT 1199 Query 1327 TGCATTATCGGTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGAACTATGTG 1386 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1200 TGCATTATCGGTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGAACTATGTA 1259 Query 1387 TGGATCTACGCAACCATTCAGTTCGGTTTTGTGGTCCTTTTCGCTCATCTTTTCTACACA 1446 ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1260 TGGATCTACGCCACCGTTCAGTTCGGTTTTGTGGTCCTTTTCGCTCAGCTTTTCTACAGA 1319 Query 1447 GTTGTAAGATTTGATGTTAAGCAGCCGGTAATGTGCATTGTCTTAGCCACTATGATCGGA 1506 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 GTTGTAAGATTTGATGTGAAGCAGCCGGTAATGTGCATTGTCTTAGCCACTATGATCGGA 1379 Query 1507 TTTGGACTCACCATGACCGGCACAACAGCTATTAACGAGTATTTGAAATGGAGGAGAAGC 1566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 TTTGGACTCACCATGACCGGCACAACAGCTATTAACGAGTATTTGAAATGGAGGAGAAGC 1439 Query 1567 AATTCCCACCAGCCAGAAGAGCCAGCAAGCACTCTGGTGGTTTGACAGCAGCGTAGATCT 1626 |||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 1440 AATTCCCACCTGCCAGAAGAGCCAGCAAGTACTCAGGTGGTTTGACAGCAGCGTAGATCT 1499 Query 1627 T--GAGTGAAGCTAGAGTCCCTAAAGGGTTGGATCGGTTTTCGATCAACCGGTCCGGATT 1684 | ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| Sbjct 1500 TTTGAGTGAAGCTAGAGTCCCTAAAGGGTTGGATCGGTTTTCAATTAACCGGTCGGGATT 1559 Query 1685 CGGTTT 1690 |||||| Sbjct 1560 CGGTTT 1565 > AT3G09760.1 | Symbols: | RING/U-box superfamily protein | chr3:2992654-2995634 REVERSE LENGTH=1980 Length=1980 Score = 435 bits (235), Expect = 9e-121 Identities = 691/901 (77%), Gaps = 72/901 (8%) Strand=Plus/Plus Query 687 TATAACTCACTCAAACCCTGAGTCCA-TGAACGGGAGGTATGCGGTTGAGGTTGATCCGG 745 |||| |||||||||| |||||||||| | |||||| | || ||| ||||||| | Sbjct 726 TATAGCTCACTCAAATCCTGAGTCCACT-CACGGGA-G-AT----TTGCCGTTGATCTAG 778 Query 746 TTACATCCATG-AAAGGGGAGCGTTTACTGCCTATTCGTCGTTCACGCTCTGTCCCTA-C 803 |||| |||| | ||| || || | ||||||||| | ||||||||||||||||| | | Sbjct 779 TTACTTCCACGAAAAAAGG-GCCTCCACTGCCTATCCACCGTTCACGCTCTGTCCC-AGC 836 Query 804 ATTCTTCAACAAAGATGGAAGTGTAAA-GCAGTCAGGTGTTTTCCGCGTGATTCCTACTC 862 | |||||||||||||||||| ||| ||| | |||||||||||| |||||||| |||| Sbjct 837 A---TTCAACAAAGATGGAAGT-CAAAGGCAATTAGGTGTTTTCCGGGTGATTCCAACTC 892 Query 863 CATCTCGTGGGGATGAGAAGAGTCTAGAGATGATGCAGGC-ATCGAAAATGAATGA-AC- 919 || | | | | | | | ||| | || | | || ||| | || || | Sbjct 893 CA-AACAT---G-TCTCCA-A--CCAGA-A--AT--A--CTAT-TAAACTTAACGACGCG 936 Query 920 -ATGATGATGGCGGAGAAGATGTTCCTgaagaagaagctgtgtgtagaatctgtatggtt 978 ||| |||||| | |||||||||||||||||||||||||||||||||||||| | || Sbjct 937 AATGTTGATGGAGCTGAAGATGTTCCTGAAGAAGAAGCTGTGTGTAGAATCTGCCTTGTA 996 Query 979 gaaatggaagaagaagaagaagCTTTTAAGATGGAATGTATGTGCAAAGGGGAATTGGCT 1038 ||| ||| |||||| |||||| || |||||||||||| |||| | ||||||| | ||| Sbjct 997 GAATTGGGAGAAGATTCAGAAGCCTTCAAGATGGAATGTTTGTGTAGAGGGGAACTAGCT 1056 Query 1039 CTTGCCCACAAA-ACGTGCACGATCAAATGGTTTACAATTAAAGGGAACATAACATGTGA 1097 |||||||||||| | || || ||||||||||| || |||||||| |||| ||||||||| Sbjct 1057 CTTGCCCACAAAGA-ATGTACAATCAAATGGTTCACCATTAAAGGAAACAGAACATGTGA 1115 Query 1098 TGTATGTAAGCAAGAGGTGAAAAATCTCCCGGTTACCCTTCTCCGTGTGCAGGATTCTCA 1157 ||| || ||||||||||| | |||||||| || |||||||| || ||||| |||||| Sbjct 1116 TGTGTGCAAGCAAGAGGTTCAGAATCTCCCTGTGACCCTTCTTCGCATGCAGAATTCTCG 1175 Query 1158 AGACCGT-TCTAGAGCAGCCAGGGATATCGAGATTTCACGGTTCAATAATGAATGGCAAG 1216 | || | | |||| ||| || |||| | ||| | || | | |||||| | Sbjct 1176 GGGTAGTAT-TGGAGC-TCCA--GACGCCGAGGCTGCACACTACAGT--T-TATGGCAGG 1228 Query 1217 ATGTTCCAATTCTTGTCATTGTAAGCATGCTTGCATACTTCTGTTTCCTTGAGCAGCTTT 1276 |||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| Sbjct 1229 ATGTTCCAATTCTTGTGATTGTAAGCATGCTTGCATACTTCTGTTTTCTCGAGCAGCTTC 1288 Query 1277 TGATTATAGATATGAAATCTAGCGCCGTTGCAATAGCTTTACCGTTCTCTTGCATTATCG 1336 || ||| | | ||| ||||| ||||| ||||| | ||||||| ||||| ||| || | | Sbjct 1289 TGCTTACAAAAATGCAATCTGGCGCCATTGCAGTTTCTTTACCATTCTCGTGCGTTCTTG 1348 Query 1337 GTCTTCTTGCATCAATGATATCAACAACAATGGTGAAGAAGA-ACTATGTGTGGATCTAC 1395 ||||| |||| || |||| |||||||||||||| ||||| | ||||| ||||| ||| Sbjct 1349 GTCTTTTTGCTTCGATGACGGCAACAACAATGGTGCCGAAGAGA-TATGTCTGGATTTAC 1407 Query 1396 GCAACCATTCAGTTCGGTTTTGTGGTCCTTTTCGCTCATC-TTTTCTACACAGTTGTAAG 1454 || || | |||||||||| |||| || ||||| |||| | |||||| |||| ||| | Sbjct 1408 GCTACAACTCAGTTCGGTCTTGTTGTTTTTTTCTCTCA-CATTTTCTTCACA-TTG---G 1462 Query 1455 ATTTG-ATGTTAAGCAGCCGGTAATGTG-C-ATTGTCTTAGCCACTAT-GATCGGATTTG 1510 || | ||| |||||||| |||| | ||| ||||||||||||| | | || |||| Sbjct 1463 -TTCGCATG-----CAGCCGGT--TGTGGCCATTCTCTTAGCCACTATCGTTGGG-TTTG 1513 Query 1511 GACTCACCATGACCGGCACAACAGCTATTAA-CGAGTATTT-GAAATGGAGGAGAAGCAA 1568 |||||||||||| ||| ||||||| ||| | ||||| ||| |||||||||||||||||| Sbjct 1514 GACTCACCATGAGCGGTACAACAGGTAT-AGTCGAGT-TTTCGAAATGGAGGAGAAGCAA 1571 Query 1569 T 1569 | Sbjct 1572 T 1572 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83533706880 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5