BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487089
Length=1836
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03190.2 | Symbols: CPUORF47 | conserved peptide upstream op... 2567 0.0
> AT5G03190.2 | Symbols: CPUORF47 | conserved peptide upstream
open reading frame 47 | chr5:758374-760382 FORWARD LENGTH=1827
Length=1827
Score = 2567 bits (1390), Expect = 0.0
Identities = 1706/1853 (92%), Gaps = 44/1853 (2%)
Strand=Plus/Plus
Query 1 TCTTTTTCCCCaaaaaaaaaa-aa-CCAGAGGAAGAG-ATCACGAAACCCTAAGTCCCAA 57
|||| |||||||||||||||| || ||||||||||| ||||||||||| | ||||||||
Sbjct 2 TCTTCTTCCCCAAAAAAAAAACAAGACAGAGGAAGAGAATCACGAAACCAT-AGTCCCAA 60
Query 58 ATCCTTCGAATCTATAAGCGTTTCTCAAACATAATCAAGAAACTGTATTTAGCTTTTGGA 117
| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||| ||
Sbjct 61 ACCCTTCGAATCTATAAGCATTTCTCAAACACAATCAAGAAACTGTGTTTAGCTTTTAGA 120
Query 118 TTTCTACAAGCATGTAAGACGAGATTTTGCTTCTTTTGTTT-TGCATGGTGGATCGATCT 176
||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |
Sbjct 121 TTTCTACAAGCATGTAAGACGAGATTTTGTTTCTTTTTTTTCTGCATGGTGGATCGAACG 180
Query 177 GTGAGAATGGGGACAGAGATGAAGTCGATTAGGGTTCCGAGAAGGGTCTGGCTTGGATCA 236
|||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||
Sbjct 181 GTGAGAATGGGGACGGAGGTGAAGTCGATTAGGGTTCCAAGAAGGGTCTGGTTTGGATCA 240
Query 237 CAAATATCTATAGTTCTCCTCGTGGGTGGAAACCATACCTCCTCCAGGCATGCTCTGTTT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAATATCTATAGTTCTCCTCGTGGGTGGAAACCATACCTCCTCCAGGCATGCTCTGTTT 300
Query 297 CGTGCTCTCATCATTGCCTCTGCTCTATCTGTTGTCCCTTTGATGGAGTTAACCGCTAAC 356
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 CGTGCTCTCATCATCGCCTCTGCTCTATCTGTTGTCCCTTTGTTGGAGTTAACCGCTAAA 360
Query 357 GATCGCGTCTTTGGTGATGATAGAGCAGTGGATTTGATCGATCTCGGCCGATTTGTTA-T 415
||| ||||||||||||| || |||||||||||||| ||||||||||||||||||||| |
Sbjct 361 AATCACGTCTTTGGTGATCATGGAGCAGTGGATTTGGTCGATCTCGGCCGATTTGTTATT 420
Query 416 CGCAGGACCGAAATTGTTCTTTGATAAGCTCGTTGTACCATTCTGGGGTAAAACTGAGAC 475
| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 421 C-CAGGACCGAAATTGTTCTTCCATAAGCTCGTTCAACCATTCTGGGGTAAAATTGAGAC 479
Query 476 AGAGAAGTATCCACAAGTGGTGATTTCTGATCTAGTTGAAGAGCTGATGGGGTTAAAGCT 535
||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||||||||
Sbjct 480 AGAGAAGTATCCACAAGTGGTAATTGCTGATCTCGTTGATGAGCTCATGGGGTTAAAGCT 539
Query 536 ATTGCATTATGATGCTAAGGTTCTCTGCATTGGTCCCGGG-TCGAATTCTGCTGTTTC-G 593
||||||||||||||||||| |||||||||||||| | ||| ||| ||||||||||||| |
Sbjct 540 ATTGCATTATGATGCTAAGATTCTCTGCATTGGT-CAGGGATCGGATTCTGCTGTTTCAG 598
Query 594 GCATTCAAAGAGATGGGTTTCTCAGATGTTCACGGGGTTCCTAAGCATCCATTGTTTTCC 653
| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 599 G-GTTCAAAGAGATGGGTTTCTCAGTTGTTCAAGGGGTTCCTAAGCATCCATTGTTTTCC 657
Query 654 GTTTTCAGTAGGAAGCATGTCAACGAGCTTGAGCTTAGTGGCGAAAAGTCGTTTGATTTC 713
|||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 658 TTTTTCAGTAGGAAGCATGTCAACGAGCTTGAGCTTAGTGGTGACAAGTCTTTTGATTTC 717
Query 714 GTG-TACTGTGGGGATGTTGATCTA-GTTGCTTCCCCTGCTCTTCTTGTGCTTGAGATGG 771
||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 718 GTGCT-CTGTGGGGATGTTGATC-ATGTTGCTTCCCCTGCTCTTCTTGTGCTTGAGATGG 775
Query 772 AGCGAGCTCTGAAGCCTGGTGGAACCGGAGCAGTCCTTGTGAGTACTAATGGCAA-CGAT 830
|||| | |||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 776 AGCGGGTTCTGAAGCCTGGTGGAACCGGAGCAGTCCTTGTGAGTACTAATGCCAATCG-T 834
Query 831 CTTGTTAAATCCGCGACTTCGGTTTCATTCTGGCTTAAACAGTCGGATATAGTGCGTGTA 890
||||| ||||||| |||||||| ||||||| ||||| || |||||||||||
Sbjct 835 CTTGTCAAATCCGTGACTTCGG---------GGCTTAAGCAGTCTGAGATAGTGCGTGTG 885
Query 891 AACTACTTGGATGAGTTCACCGTCATTGTATTCAAGAGGAATGTAACGGAAACTGCTCCT 950
||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 886 AACAACTTGGATAAGTTCACCGTCATTGTATTCAAGAGGAATGTAACGGAGACTGCTTAT 945
Query 951 TATATTGGGAAA-ACTCAGCTACCTAGAGATTGCCAATCTGTTGACACCAATAGACCTTA 1009
| |||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 946 TGTATT-GGAAAGTCTCAGCTACCAAGAGATTGCAAATCTGTTGACACCAATAGACCTTA 1004
Query 1010 CATAGAGTTTATGGAACCTCTACTCGAGCAAAAGCCTGCTGATTTCCCAAAATCAGTCGC 1069
|| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1005 CACAGAGTTCATGGAACCTCTACTGGAGCAAAAGCCTGCTGATTTCCCAAAATCAGTAGC 1064
Query 1070 TTACTTGCCTAAATTCCTTGATCTCTCTCTGAAGAAGAGCCTTGTCTACATTGACATTGG 1129
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1065 TTACTTACCTAAATTCCTTGATCTCTCTCTGAAAAAGAGCCTTGTCTACATTGACATTGG 1124
Query 1130 AGCAGCCGAGCATATAGATGCTAATTTAAATCCAAACTGGTTCTTTCCGTTATACCCACT 1189
|||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1125 AGCAGCCGAGCACATGGATGCTAATTTAACTCCAAACTGGTTCTTTCCGTTATACCCACT 1184
Query 1190 CGACAGCAAGGCTTTCAATGTCTACTTTGTCGACCACAACACTTCAGTAATGCTATCATA 1249
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1185 CGACAGCAAAGCATTCAATGTCTACTTTGTCGACCACAACACTTCAGTAATGCTATCCTA 1244
Query 1250 TGTCAAGAAACCCCGCGTCACCTTTGTTTACCATCCGGATTTGGCTGAGGACAACTCGAA 1309
||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1245 TGTCAAGAAACCCGGCGTCACCTTTGTTTACCATCCGGATTTGGCTGAGAACAACTCGAC 1304
Query 1310 AGGCAAAAAGATAACTCCGCTTGAACAGCTAGAACCATTTCCAGAAGATGAGGGTTTTGA 1369
||| |||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 1305 AGGGAAAAAGATAACTCCGCTTGAACAGCTAGAACCATTTCCAGAAGATGAGAGATTCGA 1364
Query 1370 TTTCCTTGCTTGGTTTGAGGAAACTGCGAAATACGCAGACTTTGTGGTCCTTAGGATGAA 1429
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1365 TTTCCTTGCTTGGTTTGAGGAAACTGCGAAATACGCAGACTTTGTAGTCCTTAAGATGAA 1424
Query 1430 CAC-AAGCACAGTGGAAATGAAGTTCCTAACTGTTTTATTGGAAACAGGAGCCATATGCT 1488
||| || || |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1425 CACAAACCA-AGTGGAAATGAAGTTCCTAACTGTTTTACTGGAAACAGGAGTCATATGCT 1483
Query 1489 ACGTGGATGAGCTCTTCCTCCGCTGCTCCAACCACAAACCAGACTGCATCAACATACTTC 1548
||||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 1484 ACGTGGATGAGCTTTTCCTCCGCTGTTCCAACCACAAGTCAGACTGCATCAACATGCTTC 1543
Query 1549 AAACTCTGAGAACCAGAGGTGTGTTTGTTCATCAATGGTGGGAAGACTAAACCAAGGT-- 1606
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1544 AAACTCTGAGAGCCAGAGGTGTGTTTGTTCATCAATGGTGGGAAGACTAAACCAATGTAA 1603
Query 1607 AACTCAATCTGGCCTCGCCTTTGTCTTATCTATGTC-ATTTCGTGTCTGTCTTTGTCGT- 1664
|||||||||| || ||||||| |||||||||| ||| | |||||||||||||||||| |
Sbjct 1604 AACTCAATCTCGCTTCGCCTTAGTCTTATCTACGTCGA-TTCGTGTCTGTCTTTGTC-TC 1661
Query 1665 AGTT-TCAATGGCATCACCTTCTGTGTTTGCCATAGTTGGTCCTCGGCCACCACAGCTCC 1723
|||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 AGTTGT-AATGCCATCACCTTCTGTGTTTGCCATAGTTGGTCCTCGGCCACCACAGCTCC 1720
Query 1724 TGGCCAAGCACCTATTACTAAATAAGAAGCTGCCTGTCTGTTTATCATTGCTATTTAATT 1783
||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1721 TGGCCAAGCACCTATAACTAAATAAGAAGCTGCCTATCTGTTTATCATTGCTATTTAA-- 1778
Query 1784 AAGAACTCAGTTTCCAATTGATATATATATTGAACCATAACATTTTATGTCTT 1836
|||||||||||||| || ||| ||||||||||||||||| ||||| |||||
Sbjct 1779 --GAACTCAGTTTCCACTT-ATA-ATATATTGAACCATAACGTTTTACGTCTT 1827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90862986450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5