BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487097
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03260.1 | Symbols: LAC11 | laccase 11 | chr5:777021-779424 ... 3118 0.0
> AT5G03260.1 | Symbols: LAC11 | laccase 11 | chr5:777021-779424
REVERSE LENGTH=1937
Length=1937
Score = 3118 bits (1688), Expect = 0.0
Identities = 1848/1927 (96%), Gaps = 3/1927 (0%)
Strand=Plus/Plus
Query 1 ACAATTTGTATAACCAAAAGGAATAGAACATTAAGTACAAATCAAATCTCATCATTGCAT 60
||| |||||||||||||||| | ||||| ||||||||||||| |||||||||||||||||
Sbjct 4 ACATTTTGTATAACCAAAAGCAGTAGAAGATTAAGTACAAATAAAATCTCATCATTGCAT 63
Query 61 CAAACCGGAAAATTGAACCGGAGATGAAGATGGCTTTTCTCTTTCTATTCTTTTATCTTC 120
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 64 CAAACCGGAAAATTGAACCGGAGATGAAGATGGGTTTTCTCTTTCTATTCTGTTATCTTC 123
Query 121 TTGCGTTTCTTGGCGATTCTCCGGTGGATGCGACGGTGAAGAAGTACCAATTCGATGTTC 180
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 124 TTGCGTTTCTTGGCTATTCTCCGGTGGATGCGGCGGTGAAGAAGTACCAATTCGATGTTC 183
Query 181 AAGTGAAGAACATAAGCCGGATATGCAATGCTAAACCAATTGTCACGGTTAACGGAATGT 240
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 184 AAGTGAAGAACATAAGCCGGATATGCAATGCTAAACCGATTGTCACGGTTAATGGAATGT 243
Query 241 TCCCTGGACCGACGGTTTACGCAAGAGAAGGTGATCGAGTCATCATCAACGTAACCAACC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 244 TCCCTGGACCGACGGTTTACGCAAGAGAAGGTGATCGAGTCATCATCAACGTAACCAACC 303
Query 301 ATGTACAATACAACATGTCCATTCATTGGCATGGGCTTAAACAGTACCGGAACGGTTGGG 360
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 304 ATGTACAATACAACATGTCCATCCATTGGCATGGGCTTAAACAGTACCGGAACGGTTGGG 363
Query 361 CGGATGGTCCAGCATACATAACCCAGTGTCCGATCCAAACAGGACAGAGTTACCTTTATG 420
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 364 CAGATGGTCCAGCATACATAACTCAGTGTCCGATCCAAACAGGACAGAGTTACCTTTATG 423
Query 421 ATTTCAATGTGACCGGACAACGAGGGACCCTCTGGTGGCACGCGCACATCCTCTGGCTAC 480
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 424 ATTTCAATGTGACCGGACAACGCGGGACCCTCTGGTGGCACGCACACATCCTCTGGCTAC 483
Query 481 GAGCCACCGTCTACGGAGCTATAGTCATCTTGCCTGAAGCGGGAAAACCGTATCCGTTCC 540
|||||||||||||||||||||| || |||||||||| | |||||||||||||||||||||
Sbjct 484 GAGCCACCGTCTACGGAGCTATTGTTATCTTGCCTGCACCGGGAAAACCGTATCCGTTCC 543
Query 541 CACAACCATACCAAGAATCTAACATAATCCTCGGAGAATGGTGGAACAAAGACGTTGAGA 600
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 CACAGCCATACCAAGAATCTAACATAATCCTCGGAGAATGGTGGAACAAAGACGTTGAGA 603
Query 601 CTGCGGTTAACCAAGCCAACCAATTGGGTGCACCGCCTCCAATGTCGGATGCTCATACCA 660
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 604 CTGCGGTTAACCAAGCCAACCAATTGGGTGCACCGCCTCCGATGTCGGATGCTCATACCA 663
Query 661 TTAACGGAAAACCTGGACCGCTGTTTCCGTGTTCCGAGAAACACACGTTTGCT-ATAGAG 719
|||||||||||||||||||||| ||||| |||||||||||||||||||| | | ||||||
Sbjct 664 TTAACGGAAAACCTGGACCGCTATTTCCATGTTCCGAGAAACACACGTTCG-TCATAGAG 722
Query 720 GCCGAAGCGGGTAAAACATACCTTCTGAGGATTATCAACGCAGCATTAAACGACGAGCTA 779
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 723 GCCGAAGCGGGTAAAACATATCTTCTAAGGATTATCAACGCAGCTTTAAACGACGAGCTA 782
Query 780 TTCTTCGGGATTGCGGGACACAACATGACCGTGGTGGAAATCGATGCGGTCTACACTAAA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TTCTTCGGGATTGCGGGACACAACATGACCGTGGTGGAAATCGATGCGGTCTACACTAAA 842
Query 840 CCGTTCACAACCAAAGCCATTTTAATCGGACCAGGTCAAACCACTAATGTTCTAGTCAAA 899
|| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 843 CCATTCACAACCAAAGCCATTTTACTCGGACCAGGTCAAACCACTAATGTTTTAGTCAAA 902
Query 900 ACCGACCGCTCACCAAACCGCTACTACATGGCAGCTAGTCCGTTCATGGACGCTCCAGTA 959
|||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| |||
Sbjct 903 ACCGACCGGTCACCAAACCGCTACTTCATGGCAGCTAGTCCGTTTATGGACGCTCCTGTA 962
Query 960 TCCGTAGACAACAAAACCGTAACCGCGATTCTTCAATACAAAGGCGTACCAAACACGGTC 1019
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 963 TCCGTAGACAACAAAACAGTAACCGCTATTCTTCAATACAAAGGCGTACCAAACACGGTC 1022
Query 1020 TTACCAATCTTACCCAAGCTTCCTTTGCCTAACGACACATCATTTGCTTTGGACTATAAC 1079
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 TTACCAATCCTACCAAAGCTTCCTTTGCCTAACGACACATCATTTGCTTTGGACTATAAC 1082
Query 1080 GGAAAGCTCAAGAGCCTCAACACACCAAATTTTCCGGCTCTTGTTCCATTAAAAGTCGAC 1139
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 1083 GGAAAGCTCAAGAGCCTCAACACACCGAATTTTCCGGCTCTTGTTCCTTTAAAAGTCGAC 1142
Query 1140 CGGCGACTGTTCTACACTATCGGGCTAGGCATTAACGCTTGCCCGACTTGTGTGAACGGG 1199
||||| |||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1143 AGGCGATTGTTCTACACGATCGGGCTAGGCATTAACGCGTGCCCGACTTGTGTTAACGGG 1202
Query 1200 ACAAATCTTGCAGCTTCTATAAACAATATCACATTCGTTATGCCCAAAACCGCGCTCTTG 1259
|||||||| ||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 1203 ACAAATCTCGCAGCTTCTATAAACAATATCACATTCATTATGCCCAAAACTGCACTCTTG 1262
Query 1260 AAAGCACATTACTCCAACATCTCGGGTGTTTTCAGGACTGATTTCCCAGACAGACCCCCC 1319
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||
Sbjct 1263 AAAGCACATTACTCCAACATCTCAGGTGTTTTCAGGACTGATTTCCCAGACCGACCACCC 1322
Query 1320 AAAGCGTTTAACTACACAGGTGTGCCGCTCACGGCTAACCTCGGAACATCTACGGGGACA 1379
||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1323 AAAGCGTTTAACTACACCGGTGTGCCGCTCACGGCTAACCTTGGAACATCAACGGGGACA 1382
Query 1380 AGACTTAGCCGAGTTAAGTTCAATACTACAATTGAGCTCGTCTTGCAAGACACCAATCTC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 AGACTTAGCCGAGTTAAGTTCAATACTACAATTGAGCTCGTCTTGCAAGACACCAATCTC 1442
Query 1440 CTAACCGTTGAGTCACACCCATTCCATCTTCATGGCTACAACTTCTTTGTAGTTGGCACG 1499
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 1443 CTAACCGTTGAGTCACACCCTTTCCATCTTCATGGCTACAACTTCTTTGTCGTTGGAACC 1502
Query 1500 GGTGTTGGAAACTTTGATCCCAAGAAAGATCCGGCTAAGTTCAACCTCATTGACCCGCCT 1559
|||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct 1503 GGTGTTGGAAACTTTGATCCCAAGAAAGATCCTGCTAAGTTCAATCTCGTTGACCCGCCT 1562
Query 1560 GAGAGAAACACAGTTGGAGTACCCACCGGTGGTTGGGCTGCCATCAGATTCAGGGCTGAT 1619
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1563 GAGAGAAACACCGTTGGAGTACCTACCGGTGGTTGGGCTGCCATCAGATTCAGGGCTGAT 1622
Query 1620 AATCCAGGTGTTTGGTTTATGCACTGTCACTTGGAAGTCCATACAATGTGGGGTTTGAAG 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AATCCAGGTGTTTGGTTTATGCACTGTCACTTGGAAGTCCATACAATGTGGGGTTTGAAG 1682
Query 1680 ATGGCTTTCGTCGTCGAGAACGGGAAAACACCTGAGCTTTCGGTTCTACCACCGCCTAAA 1739
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1683 ATGGCTTTCGTCGTCGAGAACGGGGAAACACCTGAGCTTTCCGTTCTACCACCGCCTAAA 1742
Query 1740 GACTATCCGTCCTGTTAAGAATCTGAGATCGGAACACTACTCTGATTCTTCGTCGT-ATT 1798
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 1743 GACTATCCGTCCTGTTAAGAATCTGAGATGGGAACACTACTCTGATTCTTCGTCTTTATT 1802
Query 1799 TGTAAAGTTTCGCTGATGATATTCTTTATTGCTTGTATTTCCCTTCTGTTGATTTGTGTC 1858
||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1803 TGTTAAGTTTCGCTGATGATATTCTTTGTTGATTGTATTTCCCTTCTGTTGATTTGTGTC 1862
Query 1859 TGAGATTGTTTCCTGTGGGGCTGCACAATACAATACACCCCGAAATTGCATAAGAAATGA 1918
|||||||||||||| |||||||||| || | |||||||||||||||||||||||||||||
Sbjct 1863 TGAGATTGTTTCCTATGGGGCTGCATAACATAATACACCCCGAAATTGCATAAGAAATGA 1922
Query 1919 AATTAAT 1925
|||||||
Sbjct 1923 AATTAAT 1929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95330834955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5