BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487100

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03285.1 | Symbols:  | other RNA | chr5:793514-793717 FORWAR...   300    4e-81


> AT5G03285.1 | Symbols:  | other RNA | chr5:793514-793717 FORWARD 
LENGTH=204
Length=204

 Score =  300 bits (162),  Expect = 4e-81
 Identities = 190/204 (93%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTTATGTGATCTACTTATCGTTTCCGGCGATTCTTCTCCTTTTGATCGTAGCTATC  60
            ||||||||||| |||||| ||||||| |||||||||||||||||| ||||||| ||||||
Sbjct  1    ATGGGTTATGTAATCTACATATCGTTCCCGGCGATTCTTCTCCTTCTGATCGTCGCTATC  60

Query  61   GCTTTTTATCTCATCGGAAGAAAAATCGGCCGGAGAGAAGGTATAGAATCAGCGTCGCAG  120
            || ||||||||||||||| |||||||||||||||||||||| ||  ||||| ||||||||
Sbjct  61   GCCTTTTATCTCATCGGACGAAAAATCGGCCGGAGAGAAGGGATTCAATCAACGTCGCAG  120

Query  121  TTTCACTACGGACCGCCGTTGGCTAATTTCCCGGCACCTGCACCACCGCATAAAGCTATG  180
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  TTACACTACGGACCGCCGTTGGCTAATTTTCCGGCACCTGCACCACCGCATAAAGCTATG  180

Query  181  GAGAAGCCACCTGAGCCGGTTTAG  204
            ||||||||||| ||||||||||||
Sbjct  181  GAGAAGCCACCGGAGCCGGTTTAG  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5