BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487104
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03330.1 | Symbols: | Cysteine proteinases superfamily prot... 2183 0.0
> AT5G03330.1 | Symbols: | Cysteine proteinases superfamily protein
| chr5:806964-809779 FORWARD LENGTH=1537
Length=1537
Score = 2183 bits (1182), Expect = 0.0
Identities = 1321/1384 (95%), Gaps = 26/1384 (2%)
Strand=Plus/Plus
Query 122 AATTTGAATTATGTTTATTTCCAACCTAAATTCTCAATCTTTCATCCCAAAATTCTAAAA 181
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 153 AATTTGAATTATGTTTATTTCCAACCTAAATTCTCAATCTTTCTTCCCAAAACTCTAAAA 212
Query 182 GTTGTCTATTTTTAGTAAAAATTCAATTCCGTCTTCAAGTTGCAGAGA-TTTAGTAAGTG 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 213 ATTGTCTATTTTTAGTAAAAATTCAATTCCGTCTTCAAGTTGCAGAGATTTTAGTAAGTG 272
Query 241 AAAGGTCAGTTTCTTTTTTGAAGATGGTGTCACATGAAGAGAACACAAGTATTGTGGAAT 300
|||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 AAAGTTTTTTTTGTTGTTTGAAGATGGTGTCACATGAAGAGAACACAAGTATTGTGGAAT 332
Query 301 GGTTTCTTGGTCCACATCCATACACGTATCCTCCTTATGGTATTGAGATGATTCATGAGG 360
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 333 GGTTTCTTGGTCCACATCCATACACGTATCCGCCTTATGGTATTGAGATGATTCATGAGG 392
Query 361 ATGAT---G-A--AGTAG-----C-TCATCATCATCACCAGAGTGGTGAGTATTACAGAG 408
||||| | | ||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 393 ATGATGAAGTAGCAGTAGCTCATCATCATCATCATCACCAGAGCGGTGAGTATTACAGAG 452
Query 409 AGTATGAAGATCATCGTAGTAGCGATGTAGATAACGATGAGATCATTGCTAGAACTCTCC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 AGTATGAAGATCATCGTAGTAGCGATGTAGATAACGATGAGATCATTGCTAGAACTCTCC 512
Query 469 AAGACGATTTTTTGCAGCTTGAAATCGCAGAAAGTAACGATTTTTCGCATCAGAAT---C 525
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 513 AAGACGATTTTTTGCAGCTTGAAATCGCAGAAAGTAACGATTATTCGCATCAGAATCAAC 572
Query 526 AACAACAACATCAACAAGAAGGTTATACTAATAACTATAGTAATAACAACAATGGATATG 585
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 573 AACAACAACATCAACAAGAAGGTTATACTAACAACTATAGTAATAACAACAATGGTTATG 632
Query 586 CTTGGAATGATCAG--T-CTGCTGTGGATTATTCTTCAGAATGGATAGGAAATGATAATG 642
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CTTGGAATGATCAGTCTCCTGCTGTGGATTATTCTTCAGAATGGATAGGAAATGATAATG 692
Query 643 ATCAAGATGGGAGGAGTGATGATTCGGTTAATGTCTTTTCGTGTTCAAGCCCGAGTGACA 702
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 ATCAAGATGGGAGGAGCGATGATTCGGTTAATGTCTTTTCGTGTTCAAGCCCGAGTGACA 752
Query 703 CGGATGAGTATGTGTACTCGTGGGAGTCAGATCAATGTGATGCTGATGGTGAATTTGGAA 762
||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 753 CGGATGAGTATGTATACTCGTGGGAATCGGATCAGTGTGATGCTGATGGTGAATTTGGAA 812
Query 763 GGAGATTGAATCAAATGATTCCCATTCCGTATATACCGAAAATAAACGGAGAAATACCTC 822
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 813 GGAGATTGAATCAAATGGTTCCCATTCCGTATATACCGAAAATAAATGGAGAAATACCTC 872
Query 823 CGGAAGAAGAAGCAGTTTCAGATCATGAAAGACTTCGGAATAGGTTAGAGATGTTTGACT 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CGGAAGAAGAAGCAGTTTCAGATCATGAAAGACTTCGGAATAGGTTAGAGATGTTTGACT 932
Query 883 TCACCGAGGTTAAGGTTCCGGGAGATGGTAATTGCCAGTTCCGTGCTTTAGCTGATCAAC 942
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 933 TCACTGAGGTTAAGGTTCCAGGAGATGGTAATTGCCAGTTCCGTGCTTTAGCTGATCAAC 992
Query 943 TGTACAAAACCGCAGATCGCCATAAACATGTTAGACGACAAATTGTAAAACAGCTCAAAT 1002
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 993 TGTACAAAACCGCAGATCGCCATAAACATGTTCGACGACAAATAGTAAAACAGCTAAAAT 1052
Query 1003 CTCGTCCAGATTCTTATCAAGGATACGTTCCTATGGACTTCTCTGAGTATCTAAAAAAGA 1062
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1053 CTCGTCCAGATTCTTATCAAGGATACGTTCCTATGGACTTCTCTGATTATCTAAGAAAGA 1112
Query 1063 TGTCTCGGAGTGGCGAGTGGGGCGATCATGTGACATTACAGGCAGCTGCAGATGCGTATC 1122
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TGTCTCGGAGCGGCGAATGGGGCGATCATGTGACATTACAGGCAGCTGCAGATGCGTATC 1172
Query 1123 GGGTGAAAATAGTAGTCCTAACATCGTTCAAGGATACATGTTACATTGAAATCCTTCCTA 1182
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1173 GGGTGAAAATAGTAGTCCTAACATCGTTCAAAGATACATGTTACATTGAAATTCTTCCTA 1232
Query 1183 CCTCCCAAGAATCCAAAGGAGTAATCTTCTTGAGCTTCTGGGCAGAGGTTCATTACAACG 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 CCTCCCAAGAATCCAAAGGAGTAATCTTCTTGAGCTTCTGGGCAGAGGTTCATTACAACG 1292
Query 1243 CCATCTACTTAAACAGAGATACATCTGAAACAGAGCTACAGAGGAAGAGAAAATGGTGGC 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 CCATCTACTTAAACAGAGATACATCTGAAACAGAGCTACAGAGGAAGAGAAAATGGTGGC 1352
Query 1303 GTTTCGGAAACTAGACAGGCCAT-GGATCATCATCACTGGGTTATATTAATATTTATTGA 1361
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 1353 GTTTCGGAAACTAGACAGACCATTGGATCATCATCACTGGGTTACATTAATATTTATTGA 1412
Query 1362 CTTGTGAGAGAGAAATGTTCTTTGACATAGTCCCTTCGTAGAG-G-GAGAGGATGATGAA 1419
|||| ||||||| ||||||| |||||||||||||||||||| | ||||||||| ||||
Sbjct 1413 CTTG--AGAGAGA--TGTTCTTAGACATAGTCCCTTCGTAGAGAGAGAGAGGATGCTGAA 1468
Query 1420 CAGAGCTCACAGCTTCAAAGTCTTACAATAATATTATTTTCTTCTTTGAAAGAAAGAAAA 1479
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1469 CAGAGCTCACAGCTTCAAAGCCTTACAATAATATTATTTTCTTCTTTGAAAGAAAGAAAA 1528
Query 1480 TTTT 1483
||||
Sbjct 1529 TTTT 1532
Score = 150 bits (81), Expect = 3e-35
Identities = 113/126 (90%), Gaps = 12/126 (10%)
Strand=Plus/Plus
Query 1 CTGGGTTTCTTTCTCGAATCGAAAAAGGGAAG-A-A-CTTTATTTTTATTCGAATCATTC 57
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1 CTGGGTTTCTTTCTCGAATCGAAAAAGGGAAGAACAGCTTTATTTTTATTCGAATCATTC 60
Query 58 TCGATCCTTTTTCTTCATCTTCTTCATCATCAGCCaaaaaaaTTGAGTCTTTTT-AGAAG 116
|||||||||||| || | | | ||||||||||||||||||| ||||||||| |||||
Sbjct 61 TCGATCCTTTTT-TT--T-T-C---ATCATCAGCCAAAAAAATTCAGTCTTTTTCAGAAG 112
Query 117 AAGAAA 122
||||||
Sbjct 113 AAGAAA 118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73192394610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5