BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487108
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03345.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 791 0.0
> AT5G03345.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Magnesium transporter (InterPro:IPR018937); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:814085-815619
FORWARD LENGTH=567
Length=567
Score = 791 bits (428), Expect = 0.0
Identities = 522/567 (92%), Gaps = 7/567 (1%)
Strand=Plus/Plus
Query 1 ACTGATCGTCTTCTATTCTAGTTCGATTCTCGGCGGAGAGTACTGGACGAGAAAATCCAG 60
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 1 ACTGATCGTCTTCTATTCTAGTTCGATTCTCGACGGAGAATACTCGACGAGAAAATCCAG 60
Query 61 ATCGGGAATCAACTT-G-G-AGAAGAAAA--ACAAAGGAGAATTTCTAAAGATGAATTTA 115
||||||||||||||| | | ||||||||| | ||| ||||| ||||||||||||||||
Sbjct 61 ATCGGGAATCAACTTAGAGAAGAAGAAAATTAAAAAAGAGAACTTCTAAAGATGAATTTG 120
Query 116 GGGTTCGTAGTTGGATTTTTCGGCGTTCTGATTCTCTCACATGCCGCTTATTCAACAATC 175
|||||| |||||||| ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 121 GGGTTCTTAGTTGGAGTTTTCGGCGTTCTTATTCTTTCTCATGCCGCTTATTCAACAATC 180
Query 176 CAATATAGAGGATTGTTGAAGATCATGGAGGAAGAGTTTTCTCGACCACCGATTAATGTT 235
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CAATATAGAGGATTGTTGAAGATTATGGAGGAAGAGTTTTCTCGACCACCGATTAATGTT 240
Query 236 ATTCTGGAGCTGATCATCGGGCTAGCTCTGTGTATGTGGGCTGCTTTGACTTTTCCTGGG 295
||||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 241 ATTCTGGAGTTGATCATTGGACTAGCTCTGTGTATGTGGGCTGCTTTGACTTTCCCTGGT 300
Query 296 AAATTCCTCTCCATCCATCCGGACTCTGATGAAAACAGGACTGTGTCTTTACCAGATAAC 355
||||| ||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||
Sbjct 301 AAATTTCTCTCGATCCATCCGGATTCTGATGAAAACAGGGCGGTGTTTTTACCAGATAAT 360
Query 356 TCAGATTTCATGATATTCAATCACCGTGGCAGACTGTTCCCACCGGAGATCGACATGAAG 415
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 TCGGATTTCATGATATTCAATCACCGTGGCAGACTGTTCCCACCGCAGATCGACATGAAG 420
Query 416 TTTTG-ACTTTTATCACACTGCTTAGTCAAACATTGATCTATCTAAAGTTATGAGATATT 474
||||| | ||||||||||||||||||||||||| |||||| | ||| |||||||||| ||
Sbjct 421 TTTTGAATTTTTATCACACTGCTTAGTCAAACACTGATCTGTGTAATGTTATGAGATGTT 480
Query 475 TCCATTGAACTTATACTCTTAAGCAACTACTCTGCTTTGCATCAATTTTTGATTCTTGAA 534
||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TCCATTGAAATTCTACTC-TAAGTAACTACTCTGCTTTGCATCAATTTTTGATTCTTGAA 539
Query 535 ACGAGTCTTGAGAAGTTTCTGTGTGTC 561
|||||||||| || |||||||||||||
Sbjct 540 ACGAGTCTTGTGATGTTTCTGTGTGTC 566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26925502792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5