BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487109
Length=546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03370.1 | Symbols: | acylphosphatase family | chr5:825573-... 821 0.0
AT5G03377.1 | Symbols: | pseudogene of acylphosphatase family ... 359 2e-98
AT5G03360.1 | Symbols: | DC1 domain-containing protein | chr5:... 84.2 1e-15
> AT5G03370.1 | Symbols: | acylphosphatase family | chr5:825573-827043
REVERSE LENGTH=764
Length=764
Score = 821 bits (444), Expect = 0.0
Identities = 519/553 (94%), Gaps = 14/553 (3%)
Strand=Plus/Plus
Query 1 AGAACATTTACTTTTAACGGAGAATGGCCTGGATTGTCGGAATTCGAACAAGATTCCTGA 60
|||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AGAACAATTACTTCCAACGGAGAATGGCCTCAATTGTCGGAATTCGAACAAGATTCCTGA 60
Query 61 GTTTCGGGAAG-TTTCCACAAATCTCTTCTTCACTGTTGAGAAT-CTATTATCCTCGTAA 118
||||||||||| ||| |||||||||||||||||||||||||||| | | ||||||||||
Sbjct 61 GTTTCGGGAAGCTTT-CACAAATCTCTTCTTCACTGTTGAGAATAC-ACAATCCTCGTAA 118
Query 119 TCATCAGAATCCTTC-TCTTCTTCCTCTTCCTTCG-TTCTCTGCCGC-CCATAGTCGTCG 175
|||||||||||| || | |||| |||||||||| | ||||||||||| || ||||||||
Sbjct 119 TCATCAGAATCC-TCTTATTCTCCCTCTTCCTT-GTTTCTCTGCCGCTCC-TAGTCGTCA 175
Query 176 TCGTCCTCTGCTTTGGCTTCGCTCATCTCCGCCTGTGTCCTTC-ATGACCACTCAGGCTG 234
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 176 TCGTCCTCTGATTTGGCTTCGCTCATCTCCGCCTGTGTCC-TCGATGACCACTCAGGCTG 234
Query 235 AATCTGGGTCTTCCCAGCAATCCGATTCTTCCAAAACGGTGAGAGTGGTGATAAAGGGAA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AATCTGGGTCTTCCCAGCAATCCGATTCTTCCAAAACGGTGAGAGTGGTGATAAAGGGAA 294
Query 295 GAGTACAGGGAGTGTGCTACAGAAACTGGACTGTTGAGAACGCTGAGCAGCTTGGGGTTA 354
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 295 GAGTACAGGGAGTGTGCTACAGAAACTGGACTGTTGAGAACGCTGAGCAGCT-GGGGATA 353
Query 355 A-GGGATGGGTGAGGAACCGCAGGGACGGTTCAGTGGAAGCACTCTTTTCTGGACCACCT 413
| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 354 AAGGGATGGGTTAGGAACCGCAGGGATGGTTCAGTGGAAGCACTCTTTTCAGGACCACCT 413
Query 414 GAAGCTGTTGATGAGATGCATCAGAGGTGTCGCCGTGGTCCTCCTGCAGCCATGGTAACT 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 414 GAAGCTGTTGATGAGATGCATCAGAGGTGTCGCCGTGGTCCTCCTGCAGCCATGGTTACC 473
Query 474 GGCTTGGAGGCTTTCCCTTCCACTGAAGAACCTGGATCAAGTTTTGAATACAGATCCACC 533
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 GGTTTGGAGGCTTTCCCTTCCACTGAAGAACCTGGATCAAGTTTTGAATACAGATCAACC 533
Query 534 GTCTGACTGATTC 546
|||||| ||||||
Sbjct 534 GTCTGATTGATTC 546
> AT5G03377.1 | Symbols: | pseudogene of acylphosphatase family
protein | chr5:820169-821016 REVERSE LENGTH=523
Length=523
Score = 359 bits (194), Expect = 2e-98
Identities = 428/533 (80%), Gaps = 47/533 (9%)
Strand=Plus/Plus
Query 25 TGGCCTGGATTGTCGGAATTCGAACAAGATTCCTGAGTTTCGGGAAGTTTCCACAAATCT 84
|||||| || |||||||||||||||||| ||||||||||||| ||| |||||||||
Sbjct 20 TGGCCTCCATCGTCGGAATTCGAACAAGAATCCTGAGTTTCGGCAAGGTTCCACAAA--- 76
Query 85 CTTCTTCACTGTTGAGAATCTATTATCCTCGTAATC-ATCAGAAT--CC-TTCTCTTCTT 140
|| ||||||||||||||| ||||||||| || || | | || || || ||
Sbjct 77 -----TC-CTGTTGAGAATCTATAATCCTCGTAGTCTCTCCG-TTCGCCGTTATCATCAG 129
Query 141 CCTCTTCCT-TCGTT-CTCTGCCGCCCATAGTC-GTCG-TCGTCCTCTGCTTTGGCTTCG 196
|| || | || || |||| || | | || | || || ||||||||||||||||||
Sbjct 130 AATCATCATCTC-TTCCTCTTCC-TACGTTCTCTGCCGCTCATCCTCTGCTTTGGCTTCG 187
Query 197 CTCATCTCCG-CCTGTGTCCTTCATGACCACTCAGG-C-T-GAATCTGG-GTCT--TCCC 249
||||||| || ||||||||| |||||||||||||| | | ||| ||| |||| ||
Sbjct 188 CTCATCT-CGTCCTGTGTCCACCATGACCACTCAGGACATAGAA--TGGAGTCTGAGACC 244
Query 250 AGCAATCCGATT-CTTCCAAAACGGTGAGAGTGGTGATAAAGGG-AAGAGTACAGGGAGT 307
| ||| | || | | | |||||| |||| |||||||| || | |||| | |||
Sbjct 245 ATCAAAAAG-TTGGGTGC---A-GGTGAGGGTGGCAATAAAGGGAAAAATTACAAGAAGT 299
Query 308 GTGCTACAGAAACTGGACTGTTGAGAACGCTGAGCAGCTTGGGGT-TAAGGGATGGGTGA 366
||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 300 GTGTTACAGGAACTGGACTGTTGAGAACGCTGAGCAGCTTGGGGTATA-GGGATGGGTCA 358
Query 367 GGAACCGCAGGGACGGTTCAGTGGAAGCACTCTTTTCTGGACCACCTGAAGCTGTTGATG 426
||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||||||
Sbjct 359 GGAACCGCAGGGATGGTTCAATGGAAGCACTCTTTTCAGGATCACCTGAAGCTGTTGATG 418
Query 427 AGATGCATCAGAGGTGTCGCCGTGGTCCTCCTGCAGCCATGGTAACTGGCTTGGAGGCTT 486
|||||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 419 AGATGCATCAGAGGTGCCGCCGTGGTCCTCCTGCAGCCATGGTTA--G------AGGCTT 470
Query 487 TCCCTTCCACTGAAGAACCTGGATCAAGTTTTGAATACAGATCCACCGTCTGA 539
||||||||||||||||||| |||||||||||| |||||||||| ||| |||||
Sbjct 471 TCCCTTCCACTGAAGAACCGGGATCAAGTTTTTAATACAGATCAACCATCTGA 523
> AT5G03360.1 | Symbols: | DC1 domain-containing protein | chr5:817864-825149
FORWARD LENGTH=4923
Length=4923
Score = 84.2 bits (45), Expect = 1e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 411 CCTGAAGCTGTTGATGAGATGCATCAGAGGTGTCGCCGTGGTCCTCCT 458
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2113 CCTGAAGCTGTTGATGAGATGCATCAGAGGTGCCGCCGTGGTCCTCCT 2066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26171990587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5