BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487115
Length=1478
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46100.1 | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase ... 2194 0.0
AT5G03406.1 | Symbols: | Class II aaRS and biotin synthetases ... 1266 0.0
> AT3G46100.1 | Symbols: ATHRS1, HRS1 | Histidyl-tRNA synthetase
1 | chr3:16928294-16931033 REVERSE LENGTH=1660
Length=1660
Score = 2194 bits (1188), Expect = 0.0
Identities = 1393/1489 (94%), Gaps = 25/1489 (2%)
Strand=Plus/Plus
Query 3 AAGAGAGATGCGAGCAATTCACATCGTGACGACGCGATTGAGCTCGAGCTTTATTAGGCC 62
||||||||||||||| ||||| ||||||||||||||||||||||||||| | |||| ||
Sbjct 43 AAGAGAGATGCGAGCGATTCATATCGTGACGACGCGATTGAGCTCGAGC--T-TTAGACC 99
Query 63 TA---TTCTTCTTGACTTCG--T-TTCTTGTTCGCCTCTTCGCCAGTTCTCTATCCCTAG 116
|| ||||||||||||| | | |||||||||||||| ||| |||||||||||||||||
Sbjct 100 TATTCTTCTTCTTGACTTGGTTTCTTCTTGTTCGCCTCCTCGACAGTTCTCTATCCCTAG 159
Query 117 GCGCTTTATCTGTGCCGCGACCAAGGCCAATGGAGGAGGCAGGTCAGGTTCGATTGTTGC 176
|||| | ||||||| | || || |||||||||||||||||||||||||| ||||||||
Sbjct 160 GCGCCTAATCTGTG-C-CG-CC---GCCAATGGAGGAGGCAGGTCAGGTTCCATTGTTGC 213
Query 177 TCCATTGGTG-GTGAATGAAGAATTT--C-AGAAGATCGATGTCAATCCTCCTAAAGAAA 232
||| |||||| |||| ||||| ||| | ||||||||||||||||||||||||||| ||
Sbjct 214 TCCTTTGGTGACTGAA-GAAGACTTTCACAAGAAGATCGATGTCAATCCTCCTAAAGGAA 272
Query 233 CTCGTGATTTCCCTCCTGAGGATATGCGACTCCGCAATTGGCTCTTCAACCACTTCAAAG 292
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 273 CTCGTGATTTTCCTCCTGAGGATATGCGTCTCCGCAATTGGCTCTTTAACCACTTCAAAG 332
Query 293 AGGTCTCACGGTTGTTTGGGTTTGAGGAAGTGGATTTTCCAGTACTGGAGACTGAGGCAT 352
||||||||||||| | ||||| |||||||||||||| ||||||||||||||| |||||||
Sbjct 333 AGGTCTCACGGTTATATGGGTATGAGGAAGTGGATTATCCAGTACTGGAGACGGAGGCAT 392
Query 353 TGTTCATCAGAAAAGCAGGGGAGGAGATTAGAGACCAACTTTACTGCTTTGAAGATAGGG 412
|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 393 TGTTCATCAGAAAAGCTGGGGAAGAGATTAGAGACCAACTTTACTGCTTTGAAGATAGAG 452
Query 413 GTAATCGCCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATAC 472
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GAAATCGGCGTGTAGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATAC 512
Query 473 AGAAAGGAAAATCCGTTTCCCTTCCATTGAAGTGGTTTGCTGTTGGGCAGTGTTGGCGCT 532
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 513 AGAAAGGAAAATCTGTTTCCCTTCCATTGAAGTGGTTTGCAATTGGGCAGTGTTGGCGAT 572
Query 533 ATGAGCGAATGACTAGAGGAAGGCGACGTGAGCATTACCAGTGGAATATGGATATTATTG 592
||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 573 ATGAGAGAATGACAAGAGGAAGGCGACGTGAGCATTACCAATGGAATATGGATATTATTG 632
Query 593 GTGTGCCTGAAGTTACAGCTGAAGCAGAACTAATTTCATCTATAGTCACTTTCTTCAAGC 652
|||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 633 GTGTGCCTCAAGTAACTGCTGAAGCAGAACTAATTTCATCTATAGTCACCTTCTTCAAGC 692
Query 653 GGATTGGAATCACTGCATCAGATGTGGGTTTTAAGGTTTCAAGCCGCAAGGTTTTACAAG 712
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GAATTGGAATCACTGCGTCAGATGTGGGTTTTAAGGTTTCAAGCCGCAAGGTTTTACAAG 752
Query 713 AATTGCTAAAAAAGTATGGTGTACCCGAAGACCTGTTTGGAAGAGTTTGTATCATTATAG 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 AATTGCTAAAAAAGTATGGTGTACCCGAAGACCTGTTTGGAAGAGTTTGTATCATTATAG 812
Query 773 ACAAGATAGAAAAGATTCCAATTGATGAAATAAAAAAGGAACTTGGGTTCACTGGCG-TA 831
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || | ||
Sbjct 813 ACAAGATAGAAAAGATACCAATTGATGAAATAAAAAAGGAACTTGGGTTCACGGG-GATA 871
Query 832 TCAGAAGATGCTATTGAACAGTTATTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTG 891
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 872 TCAGAAGATGCTATTGAACAATTACTGCAAGTGCTTTCTGTGAAGTCCTTGGATGATTTG 931
Query 892 GAAGATATACTTGGTGGAGCCGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCGCTT 951
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 932 GAAGATATAATTGGTGGAGCAGGAGAAGCCATTGCAGATTTGAAACAACTCTTCTCACTT 991
Query 952 GCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGTGGTCTT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 992 GCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTT 1051
Query 1012 GCTTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATA 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1052 GCTTATTACACTGGTATCGTCTTCGAGGGATTTGATCGAAAAGGGAAGCTGCGAGCTATA 1111
Query 1072 TGTGGTGGTGGGAGATATGACAGATTACTCTCCACGTATGGAGGTGATGACATTCCTGCT 1131
|||||||||||||||||||| || |||||||| || ||||||||||||||| ||||||||
Sbjct 1112 TGTGGTGGTGGGAGATATGATAGGTTACTCTCTACTTATGGAGGTGATGACTTTCCTGCT 1171
Query 1132 TGTGGTTTTGGTTTCGGCGATGCTGTAATTGTTGAATTGCTCAAGGAGAAGGATTTGTTG 1191
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1172 TGTGGTTTTGGTTTCGGCGATGCTGTAATAGTTGAATTGCTCAAAGAGAAGGATTTGTTG 1231
Query 1192 CCAGAATTGGGACAAGAAGTAGAGAACATTGTGTGTGCTTTGGACAAAGATCTCCAAGGA 1251
|||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1232 CCAGAACTGGGACAAGAAGTAGAGAACATAGTGTGTGCGTTGGACAAAGATCTCCAAGGA 1291
Query 1252 GCTGCAGCCACCGTTGCAACCA-CTCTCAGAGACAAAGGCCAATCCGTTGATTTAGTATT 1310
||||||||||| |||||||| | |||||||||||||||||||| |||||||||| |||||
Sbjct 1292 GCTGCAGCCACAGTTGCAAC-AGCTCTCAGAGACAAAGGCCAAACCGTTGATTTGGTATT 1350
Query 1311 GGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCGGCTCGGGTAAACGCAAGAAGGCT 1370
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1351 AGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCAGCTCGGGTAAACGCAAGAAGGCT 1410
Query 1371 GGTTCTCGTTGGGAAGACAGAGTGGGAAGATGGTTCGGTCAGTGTCAAGGTTTTGTCTTC 1430
|||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1411 GGTTCTGGTTGGGAAAACAGAGTGGGAAGATGGTTCGGTCAGTGTTAAGGTGTTGTCTTC 1470
Query 1431 AGGTGAGCAATTTCAAGTCAAACTTAATGACTTGGAGTAGTATCT-AAG 1478
||||||||| || ||||||||||| | |||||| ||||||||||| |||
Sbjct 1471 AGGTGAGCAGTTCCAAGTCAAACTCAGTGACTTAGAGTAGTATCTTAAG 1519
> AT5G03406.1 | Symbols: | Class II aaRS and biotin synthetases
superfamily protein | chr5:839885-841875 FORWARD LENGTH=1304
Length=1304
Score = 1266 bits (685), Expect = 0.0
Identities = 745/774 (96%), Gaps = 4/774 (1%)
Strand=Plus/Plus
Query 6 AGAGATGCGAGCAATTCACATCGTGACGACGCGATTGAGCTCGAGCTTTATTAGGCCTAT 65
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 78 AGAGATGCGAGCAATTCACATCGTGACGACGCGATTGAGCTCCAGCTTTATTAGGCCTGT 137
Query 66 TCTTCTTGACTTCGTTTCTTGTTCGCCTCTTCGCCAGTTCTCTATCCCTAGGCGCTTTAT 125
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 138 TCTTCTTGACTTCGTTTCTTGTTCGCCTCTACGCCAGTTCTCTACCCCTAGGCGCTTTAT 197
Query 126 CTGTGCCGCGACCAAGGCCAATGGAGGAGGCAGGTCAGGTTCGATTGTTGCTCCATTGGT 185
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 CTGTGCCGCGAGCAAGGTCAATGGAGGAGGCAGGTCAGGTTCGATTGTTGCTCCATTGGT 257
Query 186 GGTGAATGAAGAATTTCAGAAGATCGATGTCAATCCTCCTAAAGAAACTCGTGATTTCCC 245
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 258 AGTGAATGAAGAATTTCAGAACATCGATGTCAATCCTCCTAAAGGAACTCGTGATTTCCC 317
Query 246 TCCTGAGGATATGCGACTCCGCAATTGGCTCTTCAACCACTTCAAAGAGGTCTCACGGTT 305
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 318 TCCTGAGGATATGCGACTCCGCAACTGGCTCTTCAACCACTTCAAAGAGGTCTCACGGTT 377
Query 306 GTTTGGGTTTGAGGAAGTGGATTTTCCAGTACTGGAGACTGAGGCATTGTTCATCAGAAA 365
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 378 ATTTGGGTATGAGGAAGTGGATTTTCCAGTACTGGAGACGGAGGCATTGTTCATCAGAAA 437
Query 366 AGCAGGGGAGGAGATTAGAGACCAACTTTACTGCTTTGAAGATAGGGGTAATCGCCGTGT 425
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 438 AGCTGGGGAGGAGATTAGAGACCAACTTTACTGCTTTGAAGATAGGGGTAATCGCCGTGT 497
Query 426 AGCATTGAGGCCTGAGCTTACACCTTCTTTAGCCAGGCTTGTCATACAGAAAGGAAAATC 485
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 498 AGCATTGAGGCCTGAGCTTACACCTTCTTTAGCGAGGCTTGTCATACAGAAAGGAAAATC 557
Query 486 CGTTTCCCTTCCATTGAAGTGGTTTGCTGTTGGGCAGTGTTGGCGCTATGAGCGAATGAC 545
|||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||
Sbjct 558 TGTTTCCCTTCCATTGAAGTGGTTTGCTGTTGGGCAGTGTTGGAGATATGAGAGAATGAC 617
Query 546 TA-GAGGAAGGCGACGTGAGCATTACCAGTGGAATATGGATATTATTGGTGTGCCTGAAG 604
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 -ACGAGGAAGGCGACGTGAGCATTACCAGTGGAATATGGATATTATTGGTGTGCCTGAAG 676
Query 605 TTACAGCTGAAGCAGAACTAATTTCATCTATAGTCACTTTCTTCAAGCGGATTGGAATCA 664
|||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||||
Sbjct 677 TTACAGCTGAAGCAGAACTAATTTCATCTATAATGACATTCTTCAAGCGAATTGGAATCA 736
Query 665 CTGCATCAGATGTGGGTTTTAAGGTTTCAAGCCGCAAGGTTTTACAAGAATTGCTAAAAA 724
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 737 CTGCATCAGATGTGGGTTTTAAGGTTTCAAGCCGCAAGGTTTTACAAGAATTTTTAAAAA 796
Query 725 AGTATGGTGTACCCGAAGACCTGTTTGGAAGAGTTTG-TATCATTATAGACAAG 777
||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 797 AGTATGGTGTACCCGAAGACCTGTTTGGAAGAGTTTGCT-TCATTATAGACAAG 849
Score = 387 bits (209), Expect = 2e-106
Identities = 264/288 (92%), Gaps = 13/288 (5%)
Strand=Plus/Plus
Query 1185 TTTGTTGCCAGAATTGGGACAAGAAGTAGAGAACATTGTGTGTGCTTTGGACAAAGATCT 1244
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 881 TTTGTTGCCAGAATTGGGACAAGAAGTAGAGAACATCGTGTGTGCTTTGGACAAAGATCT 940
Query 1245 CCAAGGAGCTGCAGCCACCGTTGCAACCACTCTCAGAGACAAAGGCCAATCCGTTGATTT 1304
||||||||||||| ||||| |||||||| |||| | ||||||||| ||| ||||||||||
Sbjct 941 CCAAGGAGCTGCAACCACCATTGCAACCGCTCTTAAAGACAAAGGGCAAACCGTTGATTT 1000
Query 1305 AGTATTGGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCGGCTCGGGTAAACGCAAG 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 AGTATTGGAGAGTAAACCGCTGAAATGGGTGTTCAAGAGAGCGGCTCGGGTAAACGCAAG 1060
Query 1365 AAGGCTGGTTCTCGTTGGGAAGACAGAGTGGGAAGATGGTTCGGTCAGTGTCAAGGTTTT 1424
||||| |||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 1061 AAGGCCGGTTCTGGTTGGGAAG------T-------TGGTTCGGTCAGTGTCAAGGTTTT 1107
Query 1425 GTCTTCAGGTGAGCAATTTCAAGTCAAACTTAATGACTTGGAGTAGTA 1472
||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1108 GTCTTCAGGTGAGCAATTTCAAGTCAAACTTGATGACTTGGAGTAGTA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72891191340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5