BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487116
Length=1590
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03415.1 | Symbols: DPB, ATDPB | Transcription factor DP | c... 2109 0.0
> AT5G03415.1 | Symbols: DPB, ATDPB | Transcription factor DP |
chr5:842500-845415 FORWARD LENGTH=1621
Length=1621
Score = 2109 bits (1142), Expect = 0.0
Identities = 1421/1546 (92%), Gaps = 58/1546 (4%)
Strand=Plus/Plus
Query 39 AACTCCGATCGACTTATCCTCCTCCTTCTCCGGCG-AATCTC-TAAACTCTCTGACGCGA 96
||| ||||||||||||||||||||||||||||||| |||| | | ||||||| | |||||
Sbjct 51 AACCCCGATCGACTTATCCTCCTCCTTCTCCGGCGAAATC-CATTAACTCTCCGCCGCGA 109
Query 97 AAACCACCGTTCCAGAGAAGTATCACACTAATAAATCTAATGGTGATCCGCCATTATTGA 156
|||||||| |||||||| ||||||||||||| || ||||||| |||||||||||||||||
Sbjct 110 AAACCACCTTTCCAGAGTAGTATCACACTAAGAATTCTAATGTTGATCCGCCATTATTGA 169
Query 157 ACCTTCTAATTCTCGTTAATATCCaaaaaaaCCGAACTCGATTTTCAAGTAGCGGTTTGT 216
| ||||||||||||||||||| || ||||||| || ||||||||||||||||
Sbjct 170 AGCTTCTAATTCTCGTTAATAACC--AAAAACCCAAGTCGATTTTCAAGTAGC------- 220
Query 217 GCGGGTAGTTAG-TTTAGGTGGAAGAAGAATGAC-A--ACTGGGTCTAATTCTAATCACA 272
|| ||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 221 GC-GGTAGTTAGTTTTAGGTGGAAGAAGAATGACAACTACTGGGTCTAATTCTAATCACA 279
Query 273 ACCACCATGACGATGGTTCCGGTAGAAGCAATAATAATAACAATAACCCTAGTACTAGGT 332
|||| | | | | | | |||||||||||| ||||||||||||||||||||||
Sbjct 280 ACCA-C----C-A----T---G-A-AAGCAATAATAACAACAATAACCCTAGTACTAGGT 324
Query 333 CTTGGGGCACGGCGGTTTCAGGTCAATCTGTGTCTACTAGCGGCAGTATGGGCTCTCCCT 392
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 325 CTTGGGGCACGGCGGTTTCAGGTCAATCTGTGTCTACTAGCGGCAGTATGGGCTCTCCGT 384
Query 393 CGAGCCGGAGTGAGCAAACCATCACCGTTGCTACATCTGCTAGCGATAGTACTTTTCTAC 452
|||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||| ||
Sbjct 385 CGAGCCGGAGTGAGCAAACCATCACCGTTGTTACATCTACTAGCGACACTACTTTTCAAC 444
Query 453 GCATGAACAATTTGGACATTCAAGGTGATGATGCTGGTTCTCAAGGAGCTTCTGGCATTA 512
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 445 GCCTGAATAATTTGGACATTCAAGGTGATGATGCTGGTTCTCAAGGAGCTTCTGGTGTTA 504
Query 513 AGAAGAAGAAGAGGGGACAGCGTGCGGCTGGTCCAGATAAGAGTGGAAGAGGACTACGTC 572
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 505 AGAAGAAGAAGAGGGGACAGCGTGCGGCTGGTCCAGATAAGACTGGAAGAGGACTACGTC 564
Query 573 AATTTAGCATGAAAGTTTGTGAAAAGGTGGAAAGCAAAGGAAGGACAACTTACAATGAGG 632
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 AATTTAGTATGAAAGTTTGTGAAAAGGTGGAAAGCAAAGGAAGGACAACTTACAATGAGG 624
Query 633 TTGCAGACGAGCTTGTTGCTGAATTTGCACTTCCAAATAACGATGGAACATCCCCTGATC 692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGCAGACGAGCTTGTTGCTGAATTTGCACTTCCAAATAACGATGGAACATCCCCTGATC 684
Query 693 AGCAACAGTATGATGAGAAGAACATAAGACGAAGAGTATATGATGCTTTAAACGTCCTCA 752
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 685 AGCAACAGTATGATGAGAAAAACATAAGACGAAGAGTATATGATGCTTTAAACGTCCTCA 744
Query 753 TGGCTATGGATATAATATCCAAGGATAAAAAAGAGATTCAATGGAGAGGTCTTCCTCGAA 812
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 745 TGGCTATGGATATAATATCCAAGGATAAAAAAGAAATTCAATGGAGAGGTCTTCCTCGGA 804
Query 813 CAAGTTTAAGCGACATTGAAGAATTAAAGAACGAACGGCTTTCACTTAGGAACAGAATTG 872
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 805 CAAGCTTAAGCGACATTGAAGAATTAAAGAACGAACGACTCTCACTTAGGAACAGAATTG 864
Query 873 AGAAGAAAACTGCATATTCCCAAGAACTGGAAGAACAATATGTAGGCCTTCAGAATCTGA 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 AGAAGAAAACTGCATATTCCCAAGAACTGGAAGAACAATATGTAGGCCTTCAGAATCTGA 924
Query 933 TACAGAGAAATGAGCACTTATATAGCTCAGGAAATGCTCCCAGTGGTGGTGTTGCTCTTC 992
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 925 TACAGAGAAATGAGCACTTATATAGCTCAGGAAATGCTCCCAGTGGCGGTGTTGCTCTTC 984
Query 993 CTTTTATCCTTGTCCAGACTCGTCCTCATGCGACAGTAGAAGTGGAAATATCAGAAGATA 1052
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 985 CTTTTATCCTTGTCCAGACTCGTCCTCACGCAACAGTAGAAGTGGAGATATCAGAAGATA 1044
Query 1053 TGCAGCTTGTGCATTTTGATTTCAACAGCACTCCATTCGAGCTCCACGACGACAATTTTG 1112
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1045 TGCAGCTCGTGCATTTTGATTTCAACAGCACTCCATTTGAGCTCCACGACGACAATTTTG 1104
Query 1113 TCCTCAAGACTATGAAGTTTTGTGATCAACCGCCGCAACAACCAAACGGTCACAACAACA 1172
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1105 TCCTCAAGACTATGAAGTTTTGTGATCAACCGCCGCAACAACCAAACGGTCGGAACAACA 1164
Query 1173 GCCAGGTGGTTTCTCACAATTTCACGCCAGAAAACCCTAACGAAGGCCCCAGCACAGGTC 1232
||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1165 GCCAGCTGGTTTGTCACAATTTCACGCCAGAAAACCCTAACAAAGGCCCCAGCACAGGTC 1224
Query 1233 CAGCGCCGCAGGC-GGATATGTACCAGTCTCATCTCCAACCGCAACAACATGAGCAGCAT 1291
|| | |||||| | |||||||||| || ||||||| ||| ||||||||||| ||||||||
Sbjct 1225 CAACACCGCAG-CTGGATATGTACGAGACTCATCTTCAATCGCAACAACATCAGCAGCAT 1283
Query 1292 TCTCAGCTACAAATCATTCGTACACCGGAGACTAACAAAGTTGCTTCC-GCCGCTGATAC 1350
||||||||||||||||||| || || ||||||||||| ||| ||||| || ||||||||
Sbjct 1284 TCTCAGCTACAAATCATTCCTATGCCTGAGACTAACAACGTTACTTCCAGC-GCTGATAC 1342
Query 1351 TGCTCCAGTGAAATCACCGTCGCTCCCAGGGATAATGAACTCCAGCGTGAAGCCGGAGAA 1410
||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||
Sbjct 1343 TGCTCCAGTGAAATCCCCGTCTCTTCCAGGGATAATGAACTCCAGCATGAAGCCGGAGAA 1402
Query 1411 TTGAAACACGTATGAAGACCC-TTGTACAATTTCTGTAAAACTGTAAAGTAG-T-TT--- 1464
||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||
Sbjct 1403 TTGAAACACGTATGAAGGCCCCTTGTACAATTTCTGTAAAACTGTAAAGTAGCTCTTGAA 1462
Query 1465 ----TTT----GA------G--GAATAGCCGGTTTAGCGGTAAATGTACCGGTGGTTTAT 1508
||| | | |||||| | |||||||||||||||||||||||||||||
Sbjct 1463 AAACTTTACCTGGTTTTTTGACGAATAGTCTGTTTAGCGGTAAATGTACCGGTGGTTTAT 1522
Query 1509 CGAATCTAGGATCGTACTCGGGTTTAGCGATTTTAAGAATCTTTGC 1554
||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1523 CGAATCTAGGATCCTTGTCGGGTTTAGCGATTTTAAGAATCTTTGC 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78513652380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5