BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487117
Length=2127
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03420.1 | Symbols: | 5'-AMP-activated protein kinase-relat... 2130 0.0
AT5G03430.1 | Symbols: | phosphoadenosine phosphosulfate (PAPS... 89.8 1e-16
> AT5G03420.1 | Symbols: | 5'-AMP-activated protein kinase-related
| chr5:845641-848914 FORWARD LENGTH=2006
Length=2006
Score = 2130 bits (1153), Expect = 0.0
Identities = 1450/1588 (91%), Gaps = 41/1588 (3%)
Strand=Plus/Plus
Query 545 ATTCAAGTAACGAGGCTGAAGAACAAGGAAGTTTGAGTAAAGATGAATTTATATCCTCTT 604
||| |||||| ||||||||| |||||||||||||||||||||||| | | || |
Sbjct 452 ATTTAAGTAAGGAGGCTGAAAAACAAGGAAGTTTGAGTAAAGATG-----A-A---TCGT 502
Query 605 CGTCTGACGATGGATTTTTGAGCTTGGAAAACTCCCTTTCTAACTTGGGTGACAGTAATC 664
| ||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 503 C-ACTG--GCTGGAGTTTTGAGCTTGGAAAACTCTTTTTCTAACTTGGGTGACAGTAATC 559
Query 665 ATTCAGGAGAAATCACAGAAAACAATTTT-AAGGTTGAGAGCGTGGAGCTCAATGAGAGA 723
|||||||||||||||||||||| |||||| ||| ||||||| |||||||||||||||| |
Sbjct 560 ATTCAGGAGAAATCACAGAAAA-AATTTTCAAGATTGAGAGTGTGGAGCTCAATGAGATA 618
Query 724 GCTGACATTGAAAACTCTTCTTCGGAAGCTTCAATATCTGCAAACTATTCTCAAG-TTGT 782
||||||||||||||||| || || ||||||||| ||| ||||||| ||||||||| || |
Sbjct 619 GCTGACATTGAAAACTCATCGTCTGAAGCTTCAGTATTTGCAAACCATTCTCAAGATT-T 677
Query 783 AGATGATACTTCAAGCCGTCCTACTGACGCAGAAGCTGGCAATGTTTTGATGACAGAGGA 842
| |||||||||||||| || | ||||| |||||| |||||||||| ||||||||||||
Sbjct 678 ATATGATACTTCAAGCTGT-C--CTGACATAGAAGCAGGCAATGTTTCGATGACAGAGGA 734
Query 843 TGAGGAGGTCAATGATGTGGACAAAGATTTCTCTCTTACGTTTGATCATTACACCAGTCC 902
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 TGAGGAGGTCAACGATGTGGACAAAGATTTCTCTCTTACGTTTGATCATTACACCAGTCC 794
Query 903 TACCTATAATCATTACACTAGTCCAGATCTCAGTTACACCAAACATGTTGACATTGCTAC 962
||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 795 TACCTCTAATCATTACACTAGTCCAGATCTCAATTCCATCAAACATGTTGACATTGCTAC 854
Query 963 TGGATCCTCGTATGATTTGACCTCGGAAAATACCATGGCAAATGCAGAGAATTTTCAGAA 1022
|||||||||||||||| ||||||| || ||||||||| |||||| |||||||||||||||
Sbjct 855 TGGATCCTCGTATGATCTGACCTCAGAGAATACCATGACAAATGTAGAGAATTTTCAGAA 914
Query 1023 TCAGCAGATTGATGATATGGCTGAAAATCGTTCTGGTAGTGCTGATGATAGTTTAGTTGA 1082
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 915 TCAGCAGATTGATGATATTGCTGCAAATCGTTCTGGTAGTGCTGATGATAGTTTAGTTGA 974
Query 1083 GTTTGAGGATAAGGATTGGATGTCAGGACTTTCTTCTTCCATTTCAATCATAGAAGAAAA 1142
|| ||||||||| |||||||||||||| |||||||||| || ||||| ||||||||||||
Sbjct 975 GTCTGAGGATAATGATTGGATGTCAGGGCTTTCTTCTTGCACTTCAAGCATAGAAGAAAA 1034
Query 1143 AACAACCAGATTTATACAGAATGGATACTTGGATATAGTTGATGATGATGAAAATGGCAT 1202
||||||||||||||| ||||||||||||||||||| ||||| || ||||||||||| |||
Sbjct 1035 AACAACCAGATTTATTCAGAATGGATACTTGGATACAGTTGGTGCTGATGAAAATGACAT 1094
Query 1203 ACCTAATGAAAGCTGTCCTGAAGACCCTAAGGAAGATGT-AGAAACAAACAAAGGTGGTG 1261
||| ||||||||||||||||||| | ||| | | |||||||| |||||||||||
Sbjct 1095 ACCCAATGAAAGCTGTCCTGAAG------A--AAG-T-TCAGAAACAACCAAAGGTGGTG 1144
Query 1262 AGTACATAGGAGACAGT-TATGGTGGTCAGAGAAGTGTCAGTATGCCACTAAATGGAAGT 1320
||||||||||||||||| | ||| |||| ||||| | | |||| |||||||||||||||
Sbjct 1145 AGTACATAGGAGACAGTCT-TGGAGGTCCGAGAATTATGAGTACACCACTAAATGGAAGT 1203
Query 1321 GCCTTAGCATTGGAGGAGGTTACCCATGCTAAAGAACTTAACAGCTCTGACAGGAATAGT 1380
||| |||||||| ||||| | | |||||||| |||| |||| ||||||||||||||||||
Sbjct 1204 GCCCTAGCATTGAAGGAGATAATCCATGCTACAGAAGTTAATAGCTCTGACAGGAATAGT 1263
Query 1381 GATCAGAGAGATGGGAGTGCTGACCTGGACTCGGATTCACATGATGAGACCAGGAAACGG 1440
||||||||||||||||||| || | ||||| ||||| ||||| |||||||||||||||||
Sbjct 1264 GATCAGAGAGATGGGAGTGTTGGCTTGGACACGGATCCACATCATGAGACCAGGAAACGG 1323
Query 1441 GAAAATCAGGTTGAAATTGATCGGCTGAGGTTCATGCTGCATCAAAAAGAGCTGGAGTTG 1500
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1324 GAAAATCAGGTTGAAATTGATCGGCTGAGGTTCATGCTGGATCAAAAAGAGCTGGAGTTG 1383
Query 1501 TCAAGGCTGAAAGAGCAGATTGAAAAGGAAAAGCTCTCTCTTTCAGTTCTCCAAAGACAG 1560
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1384 TCAAGGCTGAAAGAGCAGATTGAAAAAGAAAAGCTGTCTCTTTCAGTTCTCCAAAGACAG 1443
Query 1561 GCTGAAACAGAGATCCAAAAGGCCCAAATGCTTATCTCAGAGAAGGAAGTTGAATTGCGA 1620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1444 GCTGAAACAGAGATCCAAAAGGCCCAAATGCTTATCTCAGAGAAGGAAGTTGAATTGCAA 1503
Query 1621 GAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGGTTGTGATTGAATATTGTGGAGATGGT 1680
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1504 GAAGCTGAGGAAAGTCTTTCAGGATTGCAAGAGGTTGTGATTGAATATTGCGGAGATGGT 1563
Query 1681 AATGTTGTGGAAGTGACTGGTAGCTTCAATGGGTGGCAACACCGAGTGGGAATGGAGCTA 1740
|| | ||||||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 1564 AACGCTGTGGAAGTGACTGGCAGTTTCAATGGGTGGCAACACCGAGTGGGAATGGAACTA 1623
Query 1741 CAAGCATCCAAGTCAATCGGGAAACAGAAATGCTGGTCGACATTACTGTGGTTATATCCC 1800
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 CAAGCATCCAAGTCAATAGGGAAACAGAAATGCTGGTCGACATTACTGTGGTTATATCCC 1683
Query 1801 GGTACATATGAGATTAAGTTCATCGTGGACGGGCAATGGATAACGGATCCTCAAAAAGAT 1860
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1684 GGTACATATGAGATAAAGTTCATCGTGGACGGGCAATGGATAACGGATCCTCAAAAAGAT 1743
Query 1861 TCGGTTACAAGAGGGCACATCACAAACAACATTCTCATAGTAGACAGCTGATGATCTCTT 1920
|||||||||||||| || ||| ||||||||||||||| |||||||||| ||||||||||
Sbjct 1744 TCGGTTACAAGAGGACATATCTCAAACAACATTCTCAAAGTAGACAGCCAATGATCTCTT 1803
Query 1921 GCTTTTACTGATTTTTCGAGTCGAATTCACTCCAGATAATCGGTGCAGGCTTAAACAGGG 1980
|| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1804 GCCTTTACTGATTTTTCGAGTCGAATTCACTCCAGATGATCGGTGCAGGCTTAAACAGGT 1863
Query 1981 GAAAAGGAGCAGAGTAAATCATTTCAAAGTTTTATTTTAGCCTCTTCAATTATTTCAAAT 2040
|||||| ||||||| ||| |||||||||| |||||| ||||||||||||| | || |
Sbjct 1864 GAAAAG-AGCAGAGCAAAACATTTCAAAGGTTTATT--AGCCTCTTCAATT-T---AAGT 1916
Query 2041 CTAGGATGTTTTGCTTTCATTCTTT-AAGGCTTAGGGATAGACTCTGTACAAAATTGTAA 2099
||| ||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1917 CTACGATGTTTTGCTTTTATTCTTTGAAG-CTTAGGGATAGACTCTGTACAAAATTGTAA 1975
Query 2100 TTTAAGGTAAAATAATACATTTATAAGG 2127
||||||||||||||||||||||||||||
Sbjct 1976 TTTAAGGTAAAATAATACATTTATAAGG 2003
Score = 518 bits (280), Expect = 1e-145
Identities = 401/455 (88%), Gaps = 26/455 (6%)
Strand=Plus/Plus
Query 1 ATGGCGACGATTTCTCAGAGACCTTTCTCTCTCTCCTTCCCTTCTCTCGAATTTCGGAAA 60
||||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||
Sbjct 1 ATGGCGACGATTTCTCAGATACCTTTCTCTATCTCCTTCCCTTGTTTCGAATTTCGGAAA 60
Query 61 CCATTGTTATACTATCATCGCCATCATCAACCTCAACTTTTTGTTTCGTACTTGAATTAC 120
|||| | | | ||| | | ||||||| |||||||||||||||||||||||||||| |
Sbjct 61 CCATCG-T-T-CTA-C-T----ATCATCAGCCTCAACTTTTTGTTTCGTACTTGAATT-C 110
Query 121 ACGAAGAAGAAGCGTAGTTTTGTCTGTTTCGCTTGTTCCATCAAACAAACCAGAGTTCGT 180
| | |||||||| ||||||| |||||||||| ||||||| |||||||||||||||||||
Sbjct 111 -C-ACGAAGAAGCATAGTTTTATCTGTTTCGCATGTTCCACCAAACAAACCAGAGTTCGT 168
Query 181 AAGAGAGTGAAGAGCGATGAGGAGCTTCGGAGTGAGATTATGGAGTTCGTTGCTTTAGCT 240
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 169 AAGAGAGTGAAGAGCAATGAGGAGCTTCGGAGTGAGATTATGCAGTTCGTTGCTTTGGCT 228
Query 241 GGGCTTCCTCAAGGTCACGTGCCGTCCATGAAGGAACTCTCGGCACATGGAAGAGTTGAT 300
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 229 GGGCTTCCTGAAGGTCACGTGCCGTCCATGAAGGAACTCTCCGCACATGGAAGAGTTGAT 288
Query 301 CTTGCCAACATTGTCAGACGAAGAGGATATAAATTTATCAAGGGACTTGTTGCAAACTC- 359
||||| |||||||| ||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct 289 CTTGCTAACATTGTAAGACGAAGAGGCTATAAATTCATCAAGGAACTTGTTGCAAACTCT 348
Query 360 GGATATGGATGA---CTGTAACGAGCTAGTC--T--CT--GAG-A-A-TAATACCAACAC 407
|| |||||| || |||||||||||||||| | || ||| | | |||||||||||
Sbjct 349 GG-TATGGAGGAAGACTGTAACGAGCTAGTCGCTGACTCTGAGGATAATAATACCAACAT 407
Query 408 TGAAACAGGTGCAAGTGGAGTTTGTTTGGAAGATT 442
||||||||| | ||| ||| ||||||||||||||
Sbjct 408 TGAAACAGGAGGAAGCCGAGCTTGTTTGGAAGATT 442
> AT5G03430.1 | Symbols: | phosphoadenosine phosphosulfate (PAPS)
reductase family protein | chr5:848864-853142 REVERSE LENGTH=2019
Length=2019
Score = 89.8 bits (48), Expect = 1e-16
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 2080 GACTCTGTACAAAATTGTAATTTAAGGTAAAATAATACATTTATAAGG 2127
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 GACTCTGTACAAAATTGTAATTTAAGGTAAAATAATACATTTATAAGG 1972
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105471345045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5