BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487118
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03430.1 | Symbols: | phosphoadenosine phosphosulfate (PAPS... 2946 0.0
> AT5G03430.1 | Symbols: | phosphoadenosine phosphosulfate (PAPS)
reductase family protein | chr5:848864-853142 REVERSE LENGTH=2019
Length=2019
Score = 2946 bits (1595), Expect = 0.0
Identities = 1734/1800 (96%), Gaps = 13/1800 (1%)
Strand=Plus/Plus
Query 24 ACTAAATACTTCCGACGGGATTCTCGATATAAAAGCAGAG-AAGCGAG-AGATGGAGATC 81
|||||||| ||| |||| ||||||||| || |||| |||| ||| || |||||||||||
Sbjct 104 ACTAAATAGTTCGGACGTGATTCTCGAGAT-AAAGGAGAGAAAG-AAGAAGATGGAGATC 161
Query 82 GATAAAGCGATCGGAGAAAGTGACGATAAGAGGTTGAAGACCAAGTACAACAACGCCATC 141
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 162 GATAAAGCGATCGGAGAAAGTGACGATAAGAGGTTGAAGACTAAGTACAATAACGCCATC 221
Query 142 TTCGTCATTAAAAGAGCTCTTGCTCTTTACTCTATTGAAGAGGTCGCCTTTAGTTTCAAT 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TTCGTCATTAAAAGAGCTCTTGCTCTTTACTCTATTGAAGAGGTCGCCTTTAGTTTCAAT 281
Query 202 GGAGGAAAAGACTCTACTGTACTGTTGCACCTTCTTAGGGCTGGCTATTTTTTGCATAAG 261
|||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 282 GGAGGAAAAGACTCCACTGTACTGTTGCACCTTCTTAGAGCTGGTTATTTTTTGCATAAA 341
Query 262 AAAGAGCAGACTTGTTCTAATGGAGGTCTATCAAGTTTTCCAGTCCGGACCATATATTTT 321
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 342 AAAGAGCAGACTTGTTCTAATGGTGGTCTATCAAGTTTTCCAGTCCGGACCATTTATTTT 401
Query 322 GAGAGCCCTTCTGCCTTCACTGAAATCAATGCATTTACATATGATGCAGCTCAAACTTAC 381
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 402 GAGAGCCCTTCTGCCTTCACTGAAATCAATGCTTTTACATACGATGCTGCTCAAACTTAC 461
Query 382 AATCTGCAACTTGATATCATTCGCCAGGATTTCAAATCCGGGTTGGAGGCATTATTAAAG 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 AATCTGCAACTTGATATCATTCGCCAGGATTTCAAATCCGGGTTGGAGGCATTATTAAAG 521
Query 442 GCTAACCCTATCAGAGCTATTTTTCTTGGCGTCCGAATTGGTGATCCTACTGCGGTTGGT 501
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 522 GCTAACCCTATCAGAGCTATTTTCCTTGGCGTCCGAATTGGTGATCCTACTGCGGTTGGT 581
Query 502 CAAGAGCAATTCTCTCCTAGTTCACCTGGATGGCCGCCCTTTATGAGGGTGAATCCTATA 561
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 582 CAAGAGCAATTCTCTCCTAGTTCACCTGGATGGCCTCCCTTTATGAGGGTGAATCCTATA 641
Query 562 TTGGATTGGTCGTACAGAGATGTTTGGGCATTTCTCCTAACTTGCAAGGTCAAGTATTGC 621
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 642 TTGGATTGGTCCTACAGAGATGTTTGGGCGTTTCTCCTAACTTGCAAGGTCAAGTATTGC 701
Query 622 AGTCTTTATGACCAGGGATATACATCAATTGGGAGCATTCATGATACTGTTCCCAATTCA 681
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 702 AGTCTTTATGACCAGGGATATACATCAATTGGGAGCATTCATGATACGGTTCCCAACTCA 761
Query 682 TTATTGTCTGTTAACGACACTAGTAGTAAAGAGAAATTCAAACCTGCTTATTTGCTTTCT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 TTATTGTCTGTTAACGACACTAGTAGTAAAGAGAAATTCAAACCTGCTTATTTGCTTTCT 821
Query 742 GATGGGAGATTAGAAAGGGCAGGGAGAGTCAAGAAAATTGCTTCACTCAAATATGACGTA 801
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 822 GATGGGAGATTAGAAAGGGCAGGGAGAGTCAAGAAAATTGCTTCACTGAAAAAAGACGTA 881
Query 802 GAAACCGAATCACAGAAACACGAGGTGCTTTTGGCCTCAGTAATTGCTGTCGGCGATGAG 861
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GATACCGAATCACAGAAACACGAGGTGCTTTTGGCCTCAGTAATTGCTGTCGGCGATGAG 941
Query 862 ATTCTGTCTGGCACTGTTGAGGATCAATTAGGACTGTCTTTGTGTAAGAAGTTGACTTTT 921
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 942 ATTCTGTCTGGCACTGTTGAGGATCAATTAGGACTGTCTTTGTGTAAGAAGTTGACTTCT 1001
Query 922 GTCGGTTGGTCGGTGCAACAAACCACTGTCCTGCGGAATGATATAGATTCTGTTTCCGAG 981
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1002 GTCGGTTGGTCGGTGCAACAAACCACTGTCCTTCGGAATGATATAGATTCTGTATCCGAG 1061
Query 982 GAAGTTGACCGCCAAAGGTCTACGAGTGATATGGTATTTATATATGGAGGAGTTGGTCCT 1041
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1062 GAAGTTGACCGCCAAAGGTCTACGAGTGATATGGTATTCATATATGGAGGAGTTGGTCCT 1121
Query 1042 TTGCATTCAGATGTTACTTTGGCTGGTGTTGCTAAGGCATTTGGAGTTCGCCTGGCACCT 1101
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1122 TTGCATTCAGATGTTACTTTGGCCGGTGTTGCTAAGGCATTTGGAGTTCGCCTGGCACCT 1181
Query 1102 GATGAAGAATTTGAGGAATACCTTAGGCATCTTATCAGCGAGCAGTGCACAGGTGACAGG 1161
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1182 GATGAAGAGTTTGAGGAATACCTTAGGCATCTTATCAGCGACCAGTGCACAGGTGACAGG 1241
Query 1162 AATGAGATGGCTCAGTTACCGGAAGGAATTACAGAACTACTGCATCATGAAAAGCTTTCG 1221
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 AATGAGATGGCTCAGTTACCGGAAGGAATTACAGAACTACTGCATCATGAAAAGCTTTCT 1301
Query 1222 GTGCCATTGATCAAGTGCCGCAATGTGATTGTTCTTGCTGCTACAAACACTGAGGAGCTC 1281
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 GTGCCATTGATTAAGTGCCGCAATGTGATTGTTCTTGCTGCTACAAACACTGAGGAGCTC 1361
Query 1282 GAGAAAGAGTGGGAATGTCTGACGGAACTTACTAAATTGGGTGGAGGTTCACTCATAGAA 1341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1362 GAGAAAGAGTGGGAATGTCTGACGGAACTTACTAAATTGGGTGGAGGTTCACTCATAGAA 1421
Query 1342 TATTCGTCAAGACGCTTAATGACATCTTTAACAGATGTGGAAGTTGCAGAACCTCTGTCC 1401
|||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1422 TATTCGTCGAGGCGCTTGATGACATCTTTAACAGATGTTGAAGTTGCAGAACCTCTGTCC 1481
Query 1402 AAACTTGGTCTCGAATTCCCAGACATATATCTTGGGTGTTACCGGAAATCTAGACAAGGT 1461
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AAACTAGGTCTCGAATTCCCAGACATATATCTTGGGTGTTACCGGAAATCTAGACAAGGT 1541
Query 1462 CCTATCATCATCTGCTTAACGGGAAAGGATAATGCACGGATTGACTCAGCTGCACAGGCA 1521
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1542 CCTATCATCATCTGCTTAACGGGAAAGGATAATGCACGGATGGACTCAGCTGCACAGGCA 1601
Query 1522 CTATGCAAGAAATTCAAGAAAGATGTGTTCGTAGAAATCAAGTAGACACAAGTTTAAGAA 1581
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 CTACGCAAGAAATTCAAGAAAGATGTGTTCGTAGAAATCAAGTAGACACAAGTTTAAGAA 1661
Query 1582 CCGGTTGAGCAAGAGACGCAGCTTCAACGGTCCACTAGAATGGCTTCTATGTACCGGTCA 1641
||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1662 CCGGTTGAGAAAGAGACACAGCTTCAATGGTCCACTTGAATGGCTTCTATGTACCGGTCA 1721
Query 1642 CATAACCTGAGAGGAAGTAACTGAAGAGGATAGGATCGGAATCTGACACTTTTTAAGGAA 1701
|| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1722 CAGAACCTGAGAGGAAGTAACTGA-GAGGATAGGATCAGAATCTGACACTTTTTAAGGAA 1780
Query 1702 ACTGGAAGCAGTTATTGTGGCAAAAACATATTTATCA-AGACCTTTAAAATTGAATGT-- 1758
||||||||||||||||||||| |||||||||||||| | |||| |||||||||||||
Sbjct 1781 ACTGGAAGCAGTTATTGTGGCGTAAACATATTTATCATA-ACCTATAAAATTGAATGTAT 1839
Query 1759 C--T-T-ATCAGTTATCAACTCTAAATAACGAAATTTGTAGGAAAGTAACCCATAAGGGT 1814
| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1840 CACTCTTATCAGTTATCAACTCTAAATAATGAAATTTGTAGGAAAGTAACCCATAAGGGT 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89758574460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5