BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487119 Length=690 Score E Sequences producing significant alignments: (Bits) Value AT5G03440.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 699 0.0 > AT5G03440.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:856926-858428 REVERSE LENGTH=688 Length=688 Score = 699 bits (378), Expect = 0.0 Identities = 505/562 (90%), Gaps = 26/562 (5%) Strand=Plus/Plus Query 141 AGTACAATGGAAGCTAATAATGAGCCTGGTAATGTGTCAACTAATTCGAGCAATGATAAA 200 |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| Sbjct 133 AGTACAATGGAAGCTAATAAGGAGCCTGGTAATGTGTCAAGTAATTCGAGCAATGATAAA 192 Query 201 GAGAATTCGACTGA-GACGATCTTTGTGAATCATGCCGAGATTGCGTGGCAAGAGATGAG 259 ||||| ||| |||| || ||||||||| || ||||||||||||||||||||||||||||| Sbjct 193 GAGAAGTCGTCTGAGGA-GATCTTTGTCAACCATGCCGAGATTGCGTGGCAAGAGATGAG 251 Query 260 AAAGAAGTGGGTTGGAGATCCGTCTAATAGGACTTCAGAGATGCCTGCTGAACCTGTAAT 319 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 252 AAAGAAGTGGGTTGGTGATCCGTCTAATAGGACTTCAGAGATGCCTGATGAACCTGTAAT 311 Query 320 AGGCTTCAACGCTACTTATGAAGACTTGCTCACATCCAACAATCCTTTCAACAAGCCCAT 379 || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || Sbjct 312 TGGTTTCAACGCTACCTATGAAGACTTGCTCACATCCAACACTCCTTTCAACAAGCCGAT 371 Query 380 CCCTCTAGCTGAAACGGTGGATTTTCTGTTCGATATATGGCATGGGGATGGTCTTTTCGA 439 |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 372 CCCTCTAGCTGAAATGGTGGATTTTCTGTTCGATATCTGGCACGGGGATGGTCTTTTCGA 431 Query 440 CTAGGTAACGGAGAGGGGATTCTCAGTATTCTTGGTACAGAA-TTTAGTTGCAGGCTGGC 498 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 432 GTAGGTAACAGAGAGGGGATTCTCAGTATTCTTGGTACAGAAATTTAGTTGCAGGATGGC 491 Query 499 TCTAATACATTTAGGTCTAAAGGATCTCAAATTCCATTATCTTTAGAAGAAACTCTGGTT 558 |||||| ||||||||| ||||||||| ||| ||| |||||||||||||||||||| ||| Sbjct 492 TCTAATCCATTTAGGTTTAAAGGATC--AAAGTCCTTTATCTTTAGAAGAAACTCTTGTT 549 Query 559 TTTTGCATTGACTTACCATGAACATATAACTAATTTAATTAGGTAT-TTTTGAGATTCTC 617 |||| ||||||||||||||||| ||||| ||| | |||||||| | ||||||||||||| Sbjct 550 TTTTCCATTGACTTACCATGAAGATATA--TAACTAAATTAGGT-TCTTTTGAGATTCTC 606 Query 618 ATCCAT-A-A--T--A--AA---T----CATGCTTCTGATGCCATTTGGTTATTTTCTTT 662 ||||| | | | | || | ||||||||||||||||||||||| |||||||| Sbjct 607 TTCCATGATAAATTCACCAAACCTGTATCATGCTTCTGATGCCATTTGGTTCTTTTCTTT 666 Query 663 AATATTGAC--TTTAGTAGTGG 682 || |||||| ||||||||||| Sbjct 667 AAGATTGACACTTTAGTAGTGG 688 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33405707755 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5