BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487119

Length=690
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03440.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   699    0.0  


> AT5G03440.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G54880.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:856926-858428 REVERSE LENGTH=688
Length=688

 Score =  699 bits (378),  Expect = 0.0
 Identities = 505/562 (90%), Gaps = 26/562 (5%)
 Strand=Plus/Plus

Query  141  AGTACAATGGAAGCTAATAATGAGCCTGGTAATGTGTCAACTAATTCGAGCAATGATAAA  200
            |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct  133  AGTACAATGGAAGCTAATAAGGAGCCTGGTAATGTGTCAAGTAATTCGAGCAATGATAAA  192

Query  201  GAGAATTCGACTGA-GACGATCTTTGTGAATCATGCCGAGATTGCGTGGCAAGAGATGAG  259
            ||||| ||| |||| || ||||||||| || |||||||||||||||||||||||||||||
Sbjct  193  GAGAAGTCGTCTGAGGA-GATCTTTGTCAACCATGCCGAGATTGCGTGGCAAGAGATGAG  251

Query  260  AAAGAAGTGGGTTGGAGATCCGTCTAATAGGACTTCAGAGATGCCTGCTGAACCTGTAAT  319
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  252  AAAGAAGTGGGTTGGTGATCCGTCTAATAGGACTTCAGAGATGCCTGATGAACCTGTAAT  311

Query  320  AGGCTTCAACGCTACTTATGAAGACTTGCTCACATCCAACAATCCTTTCAACAAGCCCAT  379
             || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct  312  TGGTTTCAACGCTACCTATGAAGACTTGCTCACATCCAACACTCCTTTCAACAAGCCGAT  371

Query  380  CCCTCTAGCTGAAACGGTGGATTTTCTGTTCGATATATGGCATGGGGATGGTCTTTTCGA  439
            |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct  372  CCCTCTAGCTGAAATGGTGGATTTTCTGTTCGATATCTGGCACGGGGATGGTCTTTTCGA  431

Query  440  CTAGGTAACGGAGAGGGGATTCTCAGTATTCTTGGTACAGAA-TTTAGTTGCAGGCTGGC  498
             |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct  432  GTAGGTAACAGAGAGGGGATTCTCAGTATTCTTGGTACAGAAATTTAGTTGCAGGATGGC  491

Query  499  TCTAATACATTTAGGTCTAAAGGATCTCAAATTCCATTATCTTTAGAAGAAACTCTGGTT  558
            |||||| ||||||||| |||||||||  ||| ||| |||||||||||||||||||| |||
Sbjct  492  TCTAATCCATTTAGGTTTAAAGGATC--AAAGTCCTTTATCTTTAGAAGAAACTCTTGTT  549

Query  559  TTTTGCATTGACTTACCATGAACATATAACTAATTTAATTAGGTAT-TTTTGAGATTCTC  617
            |||| ||||||||||||||||| |||||  ||| | |||||||| | |||||||||||||
Sbjct  550  TTTTCCATTGACTTACCATGAAGATATA--TAACTAAATTAGGT-TCTTTTGAGATTCTC  606

Query  618  ATCCAT-A-A--T--A--AA---T----CATGCTTCTGATGCCATTTGGTTATTTTCTTT  662
             ||||| | |  |  |  ||   |    ||||||||||||||||||||||| ||||||||
Sbjct  607  TTCCATGATAAATTCACCAAACCTGTATCATGCTTCTGATGCCATTTGGTTCTTTTCTTT  666

Query  663  AATATTGAC--TTTAGTAGTGG  682
            || ||||||  |||||||||||
Sbjct  667  AAGATTGACACTTTAGTAGTGG  688



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33405707755


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5