BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487121
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03450.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2837 0.0
> AT5G03450.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:858769-862297 REVERSE LENGTH=2137
Length=2137
Score = 2837 bits (1536), Expect = 0.0
Identities = 1894/2060 (92%), Gaps = 52/2060 (3%)
Strand=Plus/Plus
Query 1 CTTCTTCTCCTCCGAATTCTG----A-T-ACAGAAACGAACCTAATGCCGCCTCGCCGGC 54
||||||||| |||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct 16 CTTCTTCTCTTCCGAAATCTGATACAGTAACAGAAACGAACCTAATGCCGCCTCGCCGGA 75
Query 55 GTTACCCCTTCAGTGGTCCCGGAGATATAATTGCACGAATT-ATTGAATTT---G-AGGA 109
|||||||||||||||||| ||||| || ||||||||| ||| ||||||||| | || |
Sbjct 76 GTTACCCCTTCAGTGGTCACGGAGGTACAATTGCACG-ATTCATTGAATTTGGGGAAGCA 134
Query 110 --T-GA-A-TAT------GAAG--G-CTTTGTAGAAGAAGA--ATTTGG--G--TATGTC 149
| || | ||| |||| | | | ||| ||||| | || | |||||
Sbjct 135 TTTGGACACTATGGAGAAGAAGAAGACGAAGAAGAGGAAGACGAAGAGGAAGCATATGT- 193
Query 150 CG-CCATGGagaagaagaagacgaagaagaagaagaggaagaagacgaagaagaTTCCGA 208
|| | |||| |||| | |||| | ||||| || |||||||| || ||||||||||||||
Sbjct 194 CGACTATGGTGAAGTACAAGA-G--GAAGACGAGGAGGAAGAGGAGGAAGAAGATTCCGA 250
Query 209 AAGCCAAACCAGGGAATATATCGATTTTGTAGAGTCACCTATTAGGGTTTCACAGAACGA 268
| |||||||||||||||| |||||| | |||| |||||| |||||||||||||||||||
Sbjct 251 ACGCCAAACCAGGGAATACATCGATGTCCTAGACTCACCTGTTAGGGTTTCACAGAACGA 310
Query 269 GAGTGGAGAGA-ACGAGAATCAG-ATAAGGTCACAAGGTGTTTGCTCATCGTCTTCAGGA 326
||||| || || | ||||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 311 GAGTGAAGGGATA-GAGAATCAGAAT-AGGTCACAAGGTGTTTGTTCATCGTCTTCCGGA 368
Query 327 TCGCAGGAGGATGTCGAATGGAAACCCGGCGACACTGAGGGATTGTCTTGTTCGATCTGT 386
||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 369 TCGCAGGAGGATGTCGAATGGAAACAAGGTGACACTGAGGGATTGTCTTGTTCTATCTGT 428
Query 387 ATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCCTGTGGACACTTG 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 ATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCCTGTGGACACTTG 488
Query 447 TATGGATTTTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGG-GGGCAAGTGTCC 505
||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 489 TATGGATATTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGGAGGG-AAGTGTCC 547
Query 506 CCTGTGCAACAAAACATGTAGCTTGAGAGATGTCCGGAAAATCTATGCATCACGGGTTGC 565
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CCTGTGCAACAAAATATGTAGCTTGAGAGATGTCCGGAAAATCTATGCATCACGGGTTGC 607
Query 566 TGCAGTAGATGATGAAGCACACAAGAGAATCTTATTTTTGGAGGCCAAGTTAAGTTCAAT 625
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 608 TGCAGTAGATGATGAAGCACACAAGAGAATCTTATTTCTGGAGGCCAAGTTAAGGTCAAT 667
Query 626 TGAACAGAAGACTGCGAGTTGGAGTAACAAAGAAGCTCAATGGaaaaaaaTTGAAGCAGA 685
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||
Sbjct 668 TGAACAGAAGACTGCGAGTTGGAGTAACAAAGAAGTTCAATGGAAAATAACTGAAGCTGA 727
Query 686 GCTACAATTAGAAGTTAATAAGCTGAAGAAGAAAATAGCTAATATGGAAAGTACGACTAA 745
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 GCTACGATTAGAAGTTACTAAGCTGAAGAAGAAAATAGCTAATATGGAAAGTACGACTAA 787
Query 746 GGGTGCGCAGAGCCAGTCTAATGCGGCTTCTCAGGAGAAATATATATCTGGTCATAATAT 805
|||| |||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 788 GGGTTCGCAAAGCCAGTCTAATGTGGCTTCTCAGGAGAAATATATACCTGCTCATAATAT 847
Query 806 CTACCAAAAGCATCATGGACAGTCACCTTATTGCAGCTTCAGGCATCAGGGAGAACTGCT 865
||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 848 CTACCAAGAGCATCATGGACAGTCACCTTCTTGCAGCTTCAGACATCAGGGAGATCTGCT 907
Query 866 AATTAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATATTATTAT-TGGCCC 924
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 908 AATAAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATATTATTATATG-CCC 966
Query 925 GTAGGCTCCCAGGCGTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTCGTCGG 984
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 967 GTAGGCTCTCAGGCGTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTCGCCTT 1026
Query 985 GTGAGATTGATGATATTTTGTTGCCTCCTACCACTAGAGCAATTAAAGATCTTCACCTTT 1044
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1027 GTGAGATTGATGATATTTTGTTGCCTCGTACCACTAGAGCAATTAAAGATCTTCACCTTT 1086
Query 1045 CCCCTCACAGTAACGGGCTTGCGGTATTTGGTTCTCTAGGGAAAAAGTTATCAGTTATAA 1104
||||||||| ||| |||||||| |||||||| |||||||| ||||| ||||| |||||||
Sbjct 1087 CCCCTCACAATAATGGGCTTGCAGTATTTGGGTCTCTAGGAAAAAAATTATCTGTTATAA 1146
Query 1105 GCTTGGAGAGCCACAACACTGTCTTATCTTATGATCTACCGGCTGCATCTTGGTCTTGCT 1164
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1147 GCTTGGAGAGCCACAATACTGTCTTATCTTATGATCTACCGGCTGCACCTTGGTCTTGCT 1206
Query 1165 CGTGGGATCTCAACAGCTCTCACCATATTTATGCTGGACTACAAAATGGAATGGTTTTGG 1224
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CGTGGGATCTCAAAAGCTCTCACCATATTTATGCTGGACTACAAAATGGAATGGTTTTGA 1266
Query 1225 TATTTGACATGCGTCAAACCACGGGACCTTTTGCATCGATGACGGGCTTAACAACCAATC 1284
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1267 TATTTGACATGCGTCAAACCACGGGACCTTTCGCATCGATGACAGGCTTAACAACCAATC 1326
Query 1285 CAGTTCATACTATCCATCATCTCTCTGGCAATTCCACTCCAACTTCTGATGTTCGTACCC 1344
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1327 CAGTTCATACTGTCCATCATCTCTCTGGCAATTCCACTCCAACTTCTGATGTCCGTACCC 1386
Query 1345 TCTTATCTGCTTCTTCCATCGGGCTGTGTCAGTGGAACATTAGTGGCAGCGAGGGAAGCC 1404
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1387 TCTTATCTGCTTCTTCCATCGGGCTGTGTCAGTGGAACATTAGTGGTAGCGAGGGAAGCC 1446
Query 1405 CATCATTAGTTTGGGAAACGGGAAACCCAGGAATTTGCATATCCTCCTCGTACTGTCCCC 1464
|||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1447 CATCATTAGTTTCGGAAACGGGAAACCCAGGTGTATGCATATCCTCCTCGTACTGTCCCC 1506
Query 1465 GCAGCGATCATATAGTGGCTTCTTATAGACCGAGAGTTGGATCATCTGAGGATACAGTCC 1524
||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1507 GCAGCAATCATATAGTAGCTTCTTATAGACCAAGAGTTGGATCATCTGATGATACAGTCC 1566
Query 1525 CGACTCAGCCCTCATTGACTCAAACAGGAGCCAATAATAGTAATAGTAATGGTGTAGATG 1584
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1567 CGACTCAGCCCTCATTGACTCAAACAGGAGTCAGTAATAGTAATAGTAATGGTGTAGATG 1626
Query 1585 GATTTCATGTTTGTCATAAGAGAAGAGGTGTTGATTCGTATTACCAGAAACTTTCCTCCA 1644
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1627 GATTTCATGTTTGTCACAAGAGAAGAGGTGTTGATTCGTATTACCAGAAACTATCCTCCA 1686
Query 1645 CACAAGCTATTGTTGATCCCATCCGTTTGCCGAGAACAGCGATTATAGACTTTGGTGGAG 1704
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1687 CACAAGCTATTGTAGATCCCATCCGTTTGCCAAGAACAGCGATTATAGACTTTGGTGGGG 1746
Query 1705 AAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCGCAATCTCATCTTGCAAGATC 1764
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1747 AAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCGGGAGCTCATCTTGCAAGATC 1806
Query 1765 CTTCGACTTTTACCATCACTCAACTGTTCCCATTGTCAAGTCATCTTCTGCTGCAAGATC 1824
||||||||||||| || |||||| ||| ||||||||||||||||||| ||| ||||||
Sbjct 1807 CTTCGACTTTTACTATTTCTCAACGGTTGCCATTGTCAAGTCATCTTCCGCTTCAAGATG 1866
Query 1825 TGAAATAC-GCTGACGTCAATGGTTCGGGTCTGCTCGGTCTCTTAACAGATGATAGATTG 1883
|||||||| | | ||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1867 TGAAATACTG-TCACGTCAATGGTTCGGATCTGCTCGGTCTCTTAACGGATGATAGATTG 1925
Query 1884 CAGCTTCTTAGGAACGAATCGCCATGAAGATGAAAAAAGATTGATAGTCTTGCAGGGATG 1943
||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct 1926 CAGATTCTTAGGAACGAATCTCCATGAAGATTAAAAAAGATTGATAGTCTTGCAAGGATG 1985
Query 1944 GTGTTTGTTGAAGAGCAAACATGTATGTAAAAGCGGCTAACTTGTCTATCTATCTATCTT 2003
||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| | ||
Sbjct 1986 GTGTTTGTTGAAGAGAAAACATGTATGTAAA-GCGGCTAACTAGTCTATCTATCT-T-TT 2042
Query 2004 TTGTAATCTGGAGATGCTAT 2023
||||||||||||||||||
Sbjct 2043 --GTAATCTGGAGATGCTAT 2060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100250488365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5