BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487123

Length=403
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03460.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   636    0.0  


> AT5G03460.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant 
structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; 
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | 
chr5:864281-865678 FORWARD LENGTH=549
Length=549

 Score =  636 bits (344),  Expect = 0.0
 Identities = 388/408 (95%), Gaps = 7/408 (2%)
 Strand=Plus/Plus

Query  1    GTTTGCGTTATGTGTTTGGTGCCTCTGTTCCTCGTCCCGCTCATCAATTTAATGCCTCGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  114  GTTTGCGTTATGTGTTTGGTGCCTCTGTTCCTCGTCCCGCTCATCAATTTAATGCCTCGA  173

Query  61   ATCATCGATTATTTCATGGCCAAATTGTATGCGTGGCTCGGATGGGAGTACAGGAAGCCA  120
            |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  174  ATCATCGATTATTTCATGGCTAAATTGTACGCGTGGCTCGGATGGGAGTACAGGAAGCCA  233

Query  121  GCTAGAGTTCCTCCAGCGTGTCCTTTCAAGCCGGTTGCTAAAAACGACAACGCCACCAAA  180
            || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  234  GCGAGAGTTCCTCCAGCTTGTCCTTTCAAGCCAGTTGCTAAAAACGACAACGCCACCAAA  293

Query  181  GTGGCTGCGGAAACTGGAACTGAAGGTACAGAAACAATAGCTAAACCTGTTGTAGCGGAG  240
            |||| ||||||||||||||||||||||||||||||||||||||||||||  || |  |||
Sbjct  294  GTGGGTGCGGAAACTGGAACTGAAGGTACAGAAACAATAGCTAAACCTGGCGTTGTAGAG  353

Query  241  GAGACGGGTGGTATTAAGCAGGATTGAGGCTGAGTCTTTTCTTCAATAAAACCTTT-GTA  299
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct  354  GAGACGGGTGGTATTAAGCAGGATTGAGGCCGAGTCTTTTCTTCAATAAAACCTTTTGTA  413

Query  300  TTTGTGGATATATGTTTTGGATAAGAGAAGAAGCTGGAAGTTGAAATTACCTGATGTGAT  359
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  TTTGTGGATAT--GTTTTGGATAAGAGAAGAAGCTGGAAGTTGAAATTACCTGATGTGAT  471

Query  360  ACTGATAATGA-T-AT--ACGTTGAAAATGCTGCGTAACAGATAATTT  403
            ||||||||||| | ||  |||||||||||||| |||||||||||||||
Sbjct  472  ACTGATAATGAATGATGTACGTTGAAAATGCTACGTAACAGATAATTT  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19051476871


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5