BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487128
Length=1117
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03520.1 | Symbols: ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D, R... 1742 0.0
AT3G09900.1 | Symbols: ATRABE1E, ATRAB8E, RABE1e | RAB GTPase h... 789 0.0
AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family prote... 58.4 1e-07
AT5G47960.1 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homo... 58.4 1e-07
> AT5G03520.1 | Symbols: ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D,
RAB8C | RAB GTPase homolog 8C | chr5:883447-885425 FORWARD
LENGTH=1150
Length=1150
Score = 1742 bits (943), Expect = 0.0
Identities = 1069/1125 (95%), Gaps = 27/1125 (2%)
Strand=Plus/Plus
Query 1 TAATCAACTTGTTTTCTTCAGCGAGCGACA--TTGGAAGGAAGCATTTCATTAGCttttt 58
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 42 TAATCAACTTGTTTTCTTCAGCGAGCGACATTTTGGAAGGAAGCATTCCATTAG------ 95
Query 59 cctttttttGCTGTCTCCAG-AAATAAAATTTCAATCTTTCGTCGGaaaaaaaagaagaa 117
| ||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||
Sbjct 96 -C-TTTTTTGCTGTCTCCAGAAAATAAATTTTCAATCTTTCGTCGG----AAAA-AAGAA 148
Query 118 gaagaagaagCAGAGTTGGGTTTAGTTTTTGC-GGAGAAGCAAAGAGATCAATAAATTAG 176
||||||||||||||| |||||||||||||| | ||||||||||||||||||||| | ||
Sbjct 149 GAAGAAGAAGCAGAGCTGGGTTTAGTTTTTTCACGAGAAGCAAAGAGATCAATAAGTCAG 208
Query 177 TGAGCTTTTTTCTC-TTCTCTG-CGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTA 234
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 209 TGAGCTTTTTTCTCGTT-TCTGACGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTA 267
Query 235 TGATTACCTCATCAAGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTT 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 TGATTACCTCATCAAGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTT 327
Query 295 ACTTCGATTCTCTGATGATACTTTCACTACAAGTTTCATTACTACCATTGGGTATAATTG 354
|||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 328 ACTTCGATTCTCAGATGATACTTTCACTACAAGTTTCATTACTACCATT-GG--T-ATTG 383
Query 355 ACTTCAAGATAAGAACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATATGGGACA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 384 ACTTCAAGATAAGAACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATTTGGGACA 443
Query 415 CTGCTGGTCAAGAACGTTTCAGAACTATTACTACAGCGTATTACAGGGGAGCGATGGGTA 474
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 444 CTGCTGGTCAAGAACGTTTCAGAACTATCACTACAGCGTATTACAGGGGAGCGATGGGTA 503
Query 475 TATTGCTTGTCTACGATGTAACGGATGAGTCGTCTTTCAACAATATTAGGAACTGGATGA 534
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 504 TATTGCTTGTCTACGATGTAACGGATGAGTCATCTTTTAACAATATTAGGAACTGGATGA 563
Query 535 AGAACATCGAGCAACATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTG 594
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 AGAACATTGAGCAACATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTG 623
Query 595 ATATGGATGAAAGCAAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCTTTGGCTGATGAGT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 ATATGGATGAAAGCAAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCTTTGGCTGATGAGT 683
Query 655 ATGGAATCAAATTCTTTGAGACGAGTGCCAAAACAAACCTCAATGTCGAAAATGTTTTCC 714
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 684 ATGGAATCAAATTCTTTGAGACGAGTGCAAAAACAAACCTCAATGTCGAAAATGTTTTCA 743
Query 715 TTTCAATCGCAAAAGACATAAAACAAAGATTGACAGAAACCGATACAAAAGCAGAGCCCC 774
| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 744 TGTCAATCGCAAAAGACATAAAACAAAGATTGACAGAAACCGACACGAAGGCAGAGCCCC 803
Query 775 AAGGCATCAAGATCACCAAACAAGATACTGCCTCATCATCTTCTGCAGCCGAGAAGTCAG 834
|||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||
Sbjct 804 AAGGCATCAAGATCACTAAACAAGATACTGCCGCATCGTCTTCTACAGCCGAGAAGTCAG 863
Query 835 CTTGCTGTAGTTACGTTTAGGAGTATGATTGCTCTTTTTCGCCTGCACC-GGTTTTTT-A 892
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 864 CTTGCTGTAGTTACGTTTAGGAGTATGATTGCTCTTTTTCGCCTGCACCGGGTTTTTTAA 923
Query 893 ATATCTGGCCATCTTTCTCATCTCTTACGTCCCAAATCAGAGATAATTCTCATGTTGTTA 952
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 924 ATATCTGGCCATCTTTTTCATCTCTTACGTCTCAAATCAGAGATAATTCTCATGTTGTTA 983
Query 953 CCTAGAACGAGTAGGAAATCTCATTGATGGTTGTGATCTTTATGTCTAATTTGTTATCTC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 CCTAGAACGAGTAGGAAATCTCATTGATGGTTGTGATCTTTATGTCTAATTTGTTATCTC 1043
Query 1013 CATAATTCCTGTACAATGATCTTCCTGAAATGGAAGACTATGTTGGTCAAAAAACTATGT 1072
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1044 CATAATTCCTGTACAATGATCTTCCTGATATGGAAGACTATGTTGGTCAAAAAACTATGT 1103
Query 1073 TACAAAGACTTTGAATTTATGAAAAATGGAACTGTTGTAGTGTGT 1117
| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1104 GAAAAAGACTTTGAATTTAT-AAAAATGAAACTGTTGTAGTGTGT 1147
> AT3G09900.1 | Symbols: ATRABE1E, ATRAB8E, RABE1e | RAB GTPase
homolog E1E | chr3:3034557-3036593 FORWARD LENGTH=1001
Length=1001
Score = 789 bits (427), Expect = 0.0
Identities = 596/677 (88%), Gaps = 14/677 (2%)
Strand=Plus/Plus
Query 189 TCTTCTCTGCGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCA 248
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 122 TCTTCTC--CGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTATCTCATCA 179
Query 249 AGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTTACTTCGATTCTCTG 308
||||||| |||||||| |||||||||||||| || ||||| |||||||| || || || |
Sbjct 180 AGCTTCTCCTCATCGGTGATAGCGGTGTGGGAAAAAGTTGCTTGTTACTGCGTTTTTCGG 239
Query 309 ATGATACTTTCACTACAAGTTTCATTACTACCATTGGGTATAATTGACTTCAAGATAAGA 368
||||||||||||| || |||||||||||||||||| || ||| |||||||||||||||
Sbjct 240 ATGATACTTTCACCACGAGTTTCATTACTACCATT-GG---AATCGACTTCAAGATAAGA 295
Query 369 ACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATATGGGACACTGCTGGTCAAGAA 428
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 296 ACAGTCGAACTTGATGGGAAGCGTATCAAATTGCAGATATGGGACACTGCTGGACAAGAA 355
Query 429 CGTTTCAGAACTATTACTACAGCGTATTACAGGGGAGCGATGGGTATATTGCTTGTCTAC 488
||||| |||||||| || ||||| |||||||| ||||||||||||||||| || |||||
Sbjct 356 CGTTTTAGAACTATAACCACAGCATATTACAGAGGAGCGATGGGTATATTACTCGTCTAT 415
Query 489 GATGTAACGGATGAGTCGTCTTTCAACAATATTAGGAACTGGATGAAGAACATCGAGCAA 548
|||||||| |||||||| || |||||||| ||||||||||||||||| ||||| |||||
Sbjct 416 GATGTAACAGATGAGTCATCATTCAACAACATTAGGAACTGGATGAAAAACATTGAGCAG 475
Query 549 CATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTGATATGGATGAAAGC 608
||||| || |||| ||||||||| |||||||| ||||||||||| || ||||| ||||||
Sbjct 476 CATGCGTCCGATAGTGTCAACAAGATATTGGTCGGTAACAAAGCCGACATGGACGAAAGC 535
Query 609 AAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCT-TTGGCTGATGAGTATGGAATCAAATT 667
||||||||||| |||||| |||| || |||||| ||| ||||||||||||||||||||||
Sbjct 536 AAAAGGGCTGTCCCAACATCAAAAGGACAAGCTCTTG-CTGATGAGTATGGAATCAAATT 594
Query 668 CTTTGAGACGAGTGCCAAAACAAACCTCAATGTCGAAAATGTTTTCCTTTCAATCGCAAA 727
||||||||||||||| |||||||||| |||||||| | ||||||||||| ||||| ||
Sbjct 595 CTTTGAGACGAGTGCAAAAACAAACCAGAATGTCGAGCAGGTTTTCCTTTCTATCGCTAA 654
Query 728 AGACATAAAACAAAGATTGACAGAAACCGATACAAAAGCAGAGCCCCAAGGCATCAAGAT 787
|||||||||||||||| | ||||||| |||||||||||| ||||||||||| ||||||||
Sbjct 655 AGACATAAAACAAAGACTCACAGAAAGCGATACAAAAGCCGAGCCCCAAGGGATCAAGAT 714
Query 788 CACCAAACAAGATACT------GCCTCATCATCTTCTGCAGCCGAGAAGTCAGCTTGCTG 841
||| ||||||||| || |||||||| |||||| || ||||| |||||||||||
Sbjct 715 CACTAAACAAGATGCTAACAAAGCCTCATCGTCTTCTACAAATGAGAAATCAGCTTGCTG 774
Query 842 TAGTTACGTTTAGGAGT 858
||||| |||||| |||
Sbjct 775 CAGTTATGTTTAGAAGT 791
> AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:19422203-19425811 FORWARD LENGTH=2070
Length=2070
Score = 58.4 bits (31), Expect = 1e-07
Identities = 62/76 (82%), Gaps = 5/76 (7%)
Strand=Plus/Minus
Query 357 TTCAAGATAAGAACTGTTGAACTTGAT-GGGAAGCGTATCAAA-TTGCAGATATGGGACA 414
||| ||| |||||| ||||| | ||| | || | ||||||| | |||||||||||||
Sbjct 117 TTC-AGACAAGAACACTTGAAATCGATCGTAAAAC-TATCAAAGCT-CAGATATGGGACA 61
Query 415 CTGCTGGTCAAGAACG 430
||||||||||||||||
Sbjct 60 CTGCTGGTCAAGAACG 45
> AT5G47960.1 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homolog
A4C | chr5:19421384-19422533 REVERSE LENGTH=881
Length=881
Score = 58.4 bits (31), Expect = 1e-07
Identities = 62/76 (82%), Gaps = 5/76 (7%)
Strand=Plus/Plus
Query 357 TTCAAGATAAGAACTGTTGAACTTGAT-GGGAAGCGTATCAAA-TTGCAGATATGGGACA 414
||| ||| |||||| ||||| | ||| | || | ||||||| | |||||||||||||
Sbjct 215 TTC-AGACAAGAACACTTGAAATCGATCGTAAAAC-TATCAAAGCT-CAGATATGGGACA 271
Query 415 CTGCTGGTCAAGAACG 430
||||||||||||||||
Sbjct 272 CTGCTGGTCAAGAACG 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54768794595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5