BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487132
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03545.1 | Symbols: AT4, ATIPS2 | Expressed in response to p... 822 0.0
AT3G09922.1 | Symbols: IPS1, ATIPS1 | induced by phosphate star... 99.0 5e-20
> AT5G03545.1 | Symbols: AT4, ATIPS2 | Expressed in response to
phosphate starvation, this response is enhanced by the presence
of IAA. | chr5:894706-895400 FORWARD LENGTH=695
Length=695
Score = 822 bits (445), Expect = 0.0
Identities = 629/706 (89%), Gaps = 60/706 (8%)
Strand=Plus/Plus
Query 1 TGTCTCCATGACCAAAAACAAAGAGAGAAGGCATAAAAACTCTAACAACATCCATTGTTG 60
|||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1 TGTCTCCATGACCAAAGACAAAGAGAGAAGCCATAAAAACCCTAACAACATCCATTGTTG 60
Query 61 AAACTCTCTTTGGCACAACACCATACACACAAAATATGGCCATCCCCT------A---AA 111
||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 61 AAACTCTCTTTGGCACAACACCAAACACACAAAATATGGCCATCCCCTAAAGAAACTGAA 120
Query 112 --T----AACCCTCTGAATCTAT-AGAAGATCTCACCAATAAAGGGTTTTGAGAGGTTCA 164
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GCTCAAGAACCCTCTGAATCTATCAGAAGATCTCACCAATAAAGGGTTTTGAGAGGTTCA 180
Query 165 AGCTTCTCTTTAGGGGATGGCCCCAAACACAAGAGTGCTCACAAAAGGTAAGAAGAAGAA 224
|| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 AGTTTCTCTTTATGGGATGGCCCCAAACACAAGAGTACTCACAAAAGGTAAGAAGAAGAA 240
Query 225 GAGATCTCTTGGAGATTATGATTATGAATGTTTGTGTGTGGGTGTTGTGTAAATGATCAT 284
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 241 GAGATCTCTTGGAGATTATGATTGTGAATGTTCGTGTGTGGGTGTTGTGTAAATGATCAT 300
Query 285 CATCAT-A--AT--T-AT---C-AATAT---------------GGtgatgatgatgatga 319
|||||| | || | || | ||||| |||||||||||||||||
Sbjct 301 CATCATCATCATCATCATTATCCAATATCATAATTATCAATATGGTGATGATGATGATGA 360
Query 320 tga---ttgtgtgtgaatggagcgatgaagattgcatgaaggttgatgaaGACAAGCTTG 376
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TGAGGATTGTGTGTGAATGGAGCGATGAAGATTGCATGAAGGTTGATGAAGACAAGCTTG 420
Query 377 ATGTGTCTTTTGTTATCCCTCGTTTGGGCAACTTCGATCCTTTGGCAAGCTTCGGTTCCC 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATGTGTCTTTTGTTATCCCTCGTTTGGGCAACTTCGATCCTTTGGCAAGCTTCGGTTCCC 480
Query 437 CTCGGAATCAGCAGATTATTATTACTA--GCTCTTATTTTGTCTTATGTTCCTTGTTTAC 494
||||||||||||||||||| ||||||| |||||||| | || ||||||||| |||||||
Sbjct 481 CTCGGAATCAGCAGATTATGATTACTATAGCTCTTATAT-GT-TTATGTTCCGTGTTTAC 538
Query 495 TTTGTTCCCGGTTTGGTTTGGTTTATTGTCTTTAATTTCGTCAtgtttgtgttgaatgtg 554
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTTGTTTCCGGTTTAGTTTGGTTTATTGTCTTTAATTTCGTCATGTTTGTGTTGAATGTG 598
Query 555 tgtgttgttgttgttATCCCCTGTGATGCACCACCATTCAGGTGTGTTCCCCTATCG-GT 613
||| | |||||| ||||| |||||||||||| |||||||||||||| ||| | ||
Sbjct 599 TGT-T-GTTGTT---ATCCCGTGTGATGCACCA---TTCAGGTGTGTTCC--TAT-GTGT 647
Query 614 GTGTGAGGAATAAAAGAATATTCGGTTTTTATATCTAAAATTAAAC 659
||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 648 GTGTGAGGAATAAAAGAATATTCGGTTTTGATATCTAAAATCAAAC 693
> AT3G09922.1 | Symbols: IPS1, ATIPS1 | induced by phosphate starvation1
| chr3:3050989-3051530 FORWARD LENGTH=542
Length=542
Score = 99.0 bits (53), Expect = 5e-20
Identities = 58/60 (97%), Gaps = 1/60 (2%)
Strand=Plus/Plus
Query 400 TTGGGCAACTTCGATCCTTTGGCAAGCTTCGGTTCCCCTCGGAATCAGCAGATTAT-TAT 458
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 236 TTGGGCAACTTCTATCCTTTGGCAAGCTTCGGTTCCCCTCGGAATCAGCAGATTATGTAT 295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31848449198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5