BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487136
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03570.1 | Symbols: ATIREG2, FPN2, IREG2 | iron regulated 2 ... 2499 0.0
AT2G38460.1 | Symbols: ATIREG1, IREG1, FPN1 | iron regulated 1 ... 1234 0.0
> AT5G03570.1 | Symbols: ATIREG2, FPN2, IREG2 | iron regulated
2 | chr5:903756-906664 FORWARD LENGTH=1673
Length=1673
Score = 2499 bits (1353), Expect = 0.0
Identities = 1515/1591 (95%), Gaps = 20/1591 (1%)
Strand=Plus/Plus
Query 1 CAGATTCAATTGATATTCAGAGGAAAGAATCAAAGTAGTCTGAAGAAATGGAGGAGGAGA 60
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 17 CAGATTCAATTGATATTCAGAGGAAAGAATCAAAGTAGTCAGAAGAAATGGAGGAGGAAA 76
Query 61 CAGAAACTAGGGTTTTTCTATCAAGCGAACAACATC------------------AAGAAG 102
|||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 77 CAGAAACTAGGGTTTTCCTATCAAACGAACAACATCAAGAAGAAGAAGAAGAAGAAGAAG 136
Query 103 AAGAGCCGTCGTTGCCACGTTCCATGGTGATCTCTCTCTATCTCGGCTATTTTCTTGCTC 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 137 AAGAGCCGTCGTTGCCACGTTCCATGGTGATCTCTCTCTATCTCGGCTATTTTCTTGCTC 196
Query 163 GATGGGGAGCAAGAACTTGGGAATTCTCTGTTGCTCTGTATATGATTTACCTCTGGCCAA 222
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GATGGGGTGCAAGAACTTGGGAATTCTCTGTTGCTCTGTATATGATTTACCTCTGGCCAA 256
Query 223 ACTCTCTGTTTCTCACTGCAATGTACGGTGTTGTAGAATCCGGTTCTGCCGCTATTTTTG 282
||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| |
Sbjct 257 ACTCTCTGTTTCTCACTGCGATGTACGGTGTTGTAGAATCCGGTTCCGCCACTCTTTTCG 316
Query 283 GTCCCATTGTAGGCCAAATGATTGATGGAATGAGCTATGTTAAAGTTCTTAGACTCTGGC 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GTCCCATTGTAGGCCAAATGATTGATGGAATGAGCTATGTTAAAGTTCTTAGACTCTGGC 376
Query 343 TTGTAACTCAAAACCTCTCCTTCATTGTTGCGGGTGGTGCAGTCGTTGCTTTGCTTCTAG 402
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 377 TTGTAACTCAAAACCTCTCCTTCATTGTTGCTGGTGGTGCAGTCGTTGCTTTGCTGGTAG 436
Query 403 TTCCTGATCTTAGGTCTCATAATTTCCCTGTTTTCGCAATATTGGTCGTGTTGACTAATG 462
| |||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 437 TACCTGATCTTAAGTCTCAGAATTTCCCTGTTTTCGCAACATTGGTCGTGTTGACGAATC 496
Query 463 TTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCAGGCACCATTTTGATCGAACGAGACT 522
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 497 TTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCAGGCACCGTTTTGATCGAACGAGACT 556
Query 523 GGGTTGTGGTTATGTCGGAAGGTCATTCACCAACAGTTTTAACAAGAATGAACTCTGTTA 582
||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 557 GGGTTGTTGTTATGTCGGAAGGTCATTCACCAGCGGTTTTAACAAGAATGAACTCTGTTA 616
Query 583 TCAGAGGCATTGACTTGAGCTCGAAGCTACTGTCTCCGGTTATAACTGGTTTGATCATTA 642
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 617 TTAGAGGCATTGACTTGAGCTCTAAGCTACTGTCTCCGGTTATAACTGGTTTGATCATTA 676
Query 643 GCTTTGTATCTCTTAAAGCATCAGCTATAACATTTGCAGCTTGGGCTACTATAACCGTGT 702
||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 677 GCTTTGTATCTCTTAGAGCATCAGCTATCACATTTGCAGCTTGGGCTACTATTACCGTGT 736
Query 703 GGGTTGAGTATTGGCTCTTTATCTCTGTGTATAACGGTGTTCCTGCGATAGTTCAAAGCG 762
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 737 GGATTGAGTATTGGCTCTTTATCTCTGTGTATAACGGTGTTCCTGCTATAGTACAAAGCG 796
Query 763 ATGAGAGAAGGAGATTAAGGTTGTCTCAATCGCAAGGGGAAGAGACAGATAGTGCATCTA 822
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 797 ATGAGAGAAGGAGTTTAAGGTCGTCTCAATCGCAAGCGGAAGAGACAGATAGTGCATCTA 856
Query 823 GTTTTTATGTTCCTCTTTTACACGAAGAGGAGTCTTATAGGAA-ATCGCAAAGTAGAAGC 881
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 857 GTTTTTATGTTCCTCTTTTACACGAAGAGGAGTCTTATAGGAATA-CGCAAAGTAGAAGC 915
Query 882 GGAATCTTTAGGATTCTTGAGAGAATCTCTGAGTCTTCTTTTGTTAGCGCATGGAGGAAT 941
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 916 AGAATCTTAAGGATTCTTGAGAGAATCTCTGAGTCTTCTTTTGTTAGCGCGTGGAGGAAT 975
Query 942 TATCTCAATCAAGAGATTGTGCTCCCTGGAGTTGCTCTAGCTCTCTTGTTCTTCACCGTC 1001
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 976 TATCTCAATCAAGAGATTGTGCTCCCTGGAGTTTCTCTAGCTCTATTGTTCTTCACTGTC 1035
Query 1002 CTCAGCTTTGGAACATTGATGACGGCGACATTGGAGTGGAAAGGGATACCTACTTATATC 1061
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 CTCAGCTTTGGAACACTGATGACGGCGACATTGGAGTGGAAAGGGATACCTACTTATATC 1095
Query 1062 ATTGGTATAGGCAGAGGAATCAGTGCAGGTGTTGGACTAGCTGCTACCGTTTTGTACCCT 1121
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1096 ATTGGTATAGGCAGAGGAATCAGCGCAGGTGTTGGTCTAGCTGCTACCGTTTTGTACCCT 1155
Query 1122 CTCATGCAATCCCGTATCTCACCTCTCAGAACCGGACTCTGGTCCTTTTGGTCTCAGTGG 1181
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1156 CTCATGCAATCCCGTATCTCACCTCTCAGAACCGGAGTCTGGTCCTTTTGGTCTCAGTGG 1215
Query 1182 ACCTGTCTTTTGGTGTGTGTTGGATCAATTTGGGTTGAGAAGGAGAAAATAGCATCATAC 1241
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1216 ACCTGTCTTTTGGTGTGTGTTGGATCAATTTGGGTTGAGAAGGAGAAAATAGCATCCTAC 1275
Query 1242 ATGCTCATGGCTGGTGTTGCTGCTTCTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTA 1301
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 ATGCTCATGGCTGGAGTTGCTGCTTCTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTA 1335
Query 1302 ATCCAACAAATGCAGGATCTTGTTCCGGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAG 1361
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1336 ATCCAGCAAATGCAGGATCTTGTTCCGGAATCGGACCGTTGTGTGGTTGGAGGTGTTCAG 1395
Query 1362 AACTCATTGCAAGCGGCTCTTGCCTTGATGGCTAATCTTTTGGGTATCATTGTATCTAAT 1421
||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1396 AACTCGTTGCAATCGGCTCTTGACTTGATGGCTAATCTTTTGGGTATCATTGTATCTAAT 1455
Query 1422 CCTAAGGATTTTTGGATGTTGACGTTGATCTCATTTGCTACGGTTTCGTTTGCCGGAATG 1481
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1456 CCCAAGGATTTTTGGATGTTGACGTTGATCTCATTTGCTACGGTTTCGTTAGCCGGAATA 1515
Query 1482 CTCTATACGATTCACCTCTACCGTATTCGAAAACATCTATTTCACTTGGAGAAGATTCCC 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 CTCTATACGATTCACCTCTACCGTATTCGAAAACATCTATTTCACTTGGAGAAGATTCCC 1575
Query 1542 TTATTGAACAACTTTCTTGTTTCATGAAAAA 1572
||||||||||||||| ||| |||||||||||
Sbjct 1576 TTATTGAACAACTTTTTTGCTTCATGAAAAA 1606
> AT2G38460.1 | Symbols: ATIREG1, IREG1, FPN1 | iron regulated
1 | chr2:16103311-16106177 FORWARD LENGTH=1877
Length=1877
Score = 1234 bits (668), Expect = 0.0
Identities = 1184/1429 (83%), Gaps = 52/1429 (4%)
Strand=Plus/Plus
Query 150 TATTTTCTTGCTCGATGGGGAGCAAGAACTTGGGAATTCTCTGTTGC-TCTGTATATGAT 208
||||||||||| ||||| | || ||||| ||||||||||||||||| | ||||||||||
Sbjct 188 TATTTTCTTGCAAGATGGAGTGCCAGAACATGGGAATTCTCTGTTGCAT-TGTATATGAT 246
Query 209 TTACCTCTGGCCAAACTCTCTGTTTCTCACTGCAATGTACGGTGTTGTAGAATCCGGTTC 268
|| | ||||||||||||||| ||||| |||| || || |||| | ||||||| |||||
Sbjct 247 CCACTTGTGGCCAAACTCTCTGCTTCTCGCTGCCATTTATGGTGCTATAGAATCTGGTTC 306
Query 269 TGCCGCTATTTTTGGTCCCATTGTAGGCCAAAT-GATTGATGGAAT-GAGCTATGTTAAA 326
| | || || |||||||||||||| || | ||| | | || ||||| || ||| ||||||
Sbjct 307 TACTGCAATCTTTGGTCCCATTGTGGGGC-AATGGGTCGAGGGAATGGA-CTACGTTAAA 364
Query 327 GTTCTTAGACTCTGGCT--TGTAACTCAAAACCTCTCCTTCATTGTTGCGGGTGGTGCAG 384
||||||||||||||||| ||| | || |||||||||| || | |||| ||||||||||
Sbjct 365 GTTCTTAGACTCTGGCTCCTGT-TC-CAGAACCTCTCCTACACTATTGCTGGTGGTGCAG 422
Query 385 TCGTTGCTTTGCTT-CTAGTTCCTGATCTTAGGTCTCATAATTTCCCTGT-TTTCGCAAT 442
|| | ||| || |||||| ||||||||| ||| | ||| |||| || ||| |||||
Sbjct 423 TCATCAAGTTG-TTGCTAGTTTCTGATCTTAAGTCCCGGAATCTCCCGGTGTTT-GCAAT 480
Query 443 ATTGGTCGTGTTGACTAATGTTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCAGGCAC 502
||| | ||||| || ||| || |||||||||||||||| || || |||||||| |||||
Sbjct 481 CTTGATTGTGTTAACGAATCTTGCTGGCGCCATTGGAGTTCTTTCGACTCTTGCTGGCAC 540
Query 503 CATTTTGATCGAACGAGACTGGGTTGTGGTTATGTCGGAAGGTCATTCACCAACAGTTTT 562
|||| |||||||||||||||||| |||||||||||| ||||||||| ||||| |||| ||
Sbjct 541 CATTCTGATCGAACGAGACTGGGCTGTGGTTATGTCTGAAGGTCATCCACCAGCAGTATT 600
Query 563 AACAAGAATGAACTCTGTTATCAGAGGCATTGACTTGAGCTCGAAGCTACTGTCTCCGGT 622
|||| |||||| ||||| || ||||||||||| |||||||| |||||||||||||| ||
Sbjct 601 GACAAAAATGAATTCTGTCATTAGAGGCATTGATTTGAGCTCCAAGCTACTGTCTCCAGT 660
Query 623 TATAACTGGTTTGATCATTAGCTTTGTATCTCTTAAAGCATCAGCTATAACATTTGCAGC 682
|| |||||| ||||||| || ||||| || ||||| || ||||| || || ||||||||
Sbjct 661 CATTACTGGTCTGATCATCAGTTTTGTCTCACTTAAGGCTTCAGCGATCACTTTTGCAGC 720
Query 683 TTGGGCTACTATAACCG-TGTGGGTTGAGTATTGGCTCTTTATCTCTGTGTATAACGGTG 741
||||||||||||||| | | |||||||| ||||||||||| || |||||||||| |||||
Sbjct 721 TTGGGCTACTATAACAGCT-TGGGTTGAATATTGGCTCTTCATTTCTGTGTATAGCGGTG 779
Query 742 TTCCTGCGATAGTTCAAAGCGATGAGAGAAGGAGATTAAG-GTTGTC--TCAATCGCAAG 798
||||||| ||| | |||| |||||||| ||| || | ||| | ||| |||||
Sbjct 780 TTCCTGCAATAACACGAAGCAATGAGAGACGGATCTT--GCGTTCCCGGACAA-AGCAAG 836
Query 799 GGGAAGAGACAGATAGTGCATCTAGTTTTTATGTTCCTCTT-TTACACG-A-AGAGGAGT 855
|||| || ||| | |||| || | ||| |||| || || || | | | |||||||
Sbjct 837 TAGAAG-GA-AGAGA-TGCACCT-G--TTTCTGTTTCTATTGTTCCGGGAACAGAGGAGG 890
Query 856 CTTATA--GGAAATCGCAAAG--TAGAAGCGGAATCTTTAG-GATTCTTGAGAGAATCTC 910
||||| ||||| | | | ||||| ||||||| || | ||| || || ||||| ||
Sbjct 891 GTTATACTGGAAA-CCCTCCGTCTAGAACCGGAATC-TTGGTGATACTGGATAGAATGTC 948
Query 911 TGAGTCTTCTTTTGTTAGCGCATGGAGGAA-TTATCTCAATCAAG-AGATTGTGCTCCCT 968
|||| ||||||||| ||||||||| ||| |||| ||||||||| || |||| |||||
Sbjct 949 CAAGTCCTCTTTTGTTGGCGCATGGA-GAATTTATTTCAATCAAGAAG-TTGTCCTCCCC 1006
Query 969 GGAGTTGCTCTAGCTCTCTTGTTCTTCACCGTCCTCAGCTTTGGAACATTGATGACGGCG 1028
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 GGGGTTTCTCTAGCTCTCTTGTTCTTCACCGTCCTCAGCTTTGGAACATTGATGACGGCT 1066
Query 1029 ACATTGGAGTGGAAAGGGATACCTACTTATATCATTGGTATAGGCAGAGGAATCAGTGCA 1088
|||||| ||||| |||| |||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 1067 ACATTGCAGTGGGAAGGTATACCTACATATATCATCGGTATAGGCAGGGGAATAAGTGCA 1126
Query 1089 G-GTGTTGGACTAGCTGCTACCGTTT-TGTACCCTCTCATGCAATCCCGTATCTCACCTC 1146
| ||||||||||| ||||| || |||| || || |||||||| ||| ||||| |||
Sbjct 1127 ACG-GTTGGACTAGCGGCTACA-TTAGTGTATCCGCTAATGCAATCGCGTCTCTCAACTC 1184
Query 1147 TCAGAACCGGACTCTGGTCCTTTTGGTCTCAGTGGACCTGTCTTTTGGTGTGTGTTGGAT 1206
| |||||||| ||||||||||| ||||||||||||| ||| |||||||| || |||||||
Sbjct 1185 TGAGAACCGGCCTCTGGTCCTTCTGGTCTCAGTGGAGCTGCCTTTTGGTCTGCGTTGGAT 1244
Query 1207 CAATTTGGGTTGAGAAGGAGAAAATAGCATCATACATGCTCATGGCTGGTGTTGCTGCTT 1266
| ||||||||| | ||||| ||||||||||| |||||||| |||||||| ||||||||||
Sbjct 1245 CGATTTGGGTTAAAAAGGATAAAATAGCATCTTACATGCTAATGGCTGGAGTTGCTGCTT 1304
Query 1267 CTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTAATCCAACAAATGCAGGATCTTGTTC 1326
| |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||
Sbjct 1305 CAAGGCTTGGCTTGTGGATGTTTGATCTTGCCGTCATCCAACAAATGCAGGATCTTGTTT 1364
Query 1327 CGGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCATTGCAAGCGGCTCTTGCCT 1386
| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 1365 CAGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCACTGCAATCGGCTCTTGACT 1424
Query 1387 TGATGGC-TAATCTTTTGGGTATCATTGTATCTAATCCTAAGGATTTTTGGATGTTGACG 1445
||||||| || |||||| ||||||||||| || ||||| |||||||||||||| ||||||
Sbjct 1425 TGATGGCATA-TCTTTTAGGTATCATTGTCTCCAATCCAAAGGATTTTTGGATATTGACG 1483
Query 1446 TTGATCTCATT-TGCTACGGTTTCGTTTGCCGGAATGCTCTATACGATTCACCTCTACCG 1504
||||||||||| | | || || ||||| || |||||||||||||| ||||||||||||||
Sbjct 1484 TTGATCTCATTCTCC-ACAGTATCGTTGGCAGGAATGCTCTATACAATTCACCTCTACCG 1542
Query 1505 TATTCGAAAACATCTATTTCA-CTTGGAGAAGATTCCCTTATTGAACAA 1552
|| |||| ||| | ||||| |||| |||||||||| || ||||||||
Sbjct 1543 CATAAGAAACCATATTTTTCATCTTG-AGAAGATTCCTTTGTTGAACAA 1590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5