BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487140
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03610.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1958 0.0
> AT5G03610.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr5:915465-918485 FORWARD LENGTH=1424
Length=1424
Score = 1958 bits (1060), Expect = 0.0
Identities = 1296/1403 (92%), Gaps = 44/1403 (3%)
Strand=Plus/Plus
Query 1 GGCTTACTATATAAAGCCACAAAGACA--TTAGTGAGAACACAAATTCAATTTCAATTCT 58
|||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 11 GGCTTACTATATAAAGCCGCAAAGACATTTTAGTGAGAACACAAATTCAATTCCAATTCT 70
Query 59 CAAAGTGCTCTC-TTTTAAACCCA--T-CT-TC-T---C-T-CT-TC-C-A---CT-T-- 98
|||||||||||| ||||||||| | | || || | | | || || | | || |
Sbjct 71 CAAAGTGCTCTCTTTTTAAACCAATCTGCTCTCTTCCACTTACTCTCTCTATCTCTCTCC 130
Query 99 -A-CTC-TCTC-TTTTTGGTCATTAAAAGAG-AACCTCGTTGCTCTGAATCTTGAAAATG 153
| ||| | || ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 131 CATCTCGTTTCTTTTTTGGTCATTAAAAGAGAAACCT--TTGCTCTGAATCTTGAAAATG 188
Query 154 GATTATTTGATCAAACTCTTCTTCT-CCTTATTTCTCTTCTTAT-TCACTTCGCTGTTAT 211
|||| |||||||||||||||||||| || | ||| ||||||||| | |||||||| ||||
Sbjct 189 GATTCTTTGATCAAACTCTTCTTCTGCC-TCTTTATCTTCTTATGT-ACTTCGCTCTTAT 246
Query 212 TTGGAGAAATCAATGGAGTGGAGGGTTCAAATCAAAATCATCACTTGTA-CGCATTTAGA 270
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 247 TTGGAGAAATCAATGGAGTGGAGGGTTCAAATCAAAATCATCACTTGTATC-CATTTAGG 305
Query 271 CCAACGAAACTGTTTGTGTTCGGAGATTCTTATGCCGATACCGGAAACATTAGAAAGGCT 330
|||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 306 CCAACGAAGCTCTTTGTGTTCGGAGATTCTTATGCCGATACCGGAAACATTAAAAAGGCT 365
Query 331 CTCTCTAGCTCTTGGAAATTCCCTTACGGTATCACTTTCCCCGGAAAACCTGCTGGCCGT 390
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 366 TTCTCTAGCTCTTGGAAATTCCCTTACGGTATCACTTTCCCCGGAAAACCCGCTGGCCGT 425
Query 391 TTCTCCGACGGACGTGTCGCAACAGATTTTCTAGCAAAATTCGTGGGGATAAAATCACCA 450
|||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 426 TTCTCCGATGGCCGTGTGGCAACAGATTTTCTAGCTAAATTTGTGGGGATAAAATCACCA 485
Query 451 ATCCCATACTTCTGGAAAGATTACGCGGGAAAGAAACGGTTGCAGTACGGAATGAATTTT 510
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 486 ATCCCATACTTTTGGAAAGATTACGCGGGAAAGAAACGATTACAGTACGGAATGAATTTT 545
Query 511 GCATACGGAGGAACAGGAGTGTTCAACACTCAAACTCCGTTGCCTAACATGACCACTCAA 570
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 546 GCGTACGGAGGAACAGGAGTGTTCAACACTCAAACTCCATTGCCTAACATGACAACTCAA 605
Query 571 ATAGACATCTTCCAGAACCTTCTCACCGCCGGCGACATCTACTATCCTTCCGAGCTTACT 630
|| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 606 ATCGACATCTTCCAGAACATTCTCACCACCGGCGACATCTACTATCCTCCCGAGCTTACT 665
Query 631 TCCTCCGTTGCTCTTGTTAGCGTCGCTGGCAACGACTACTCCAATTTCATCGCCTTAAAC 690
|| ||||| ||||| || || ||||||||||||||||||||||||||||||||| |||||
Sbjct 666 TCATCCGTGGCTCTCGTCAGTGTCGCTGGCAACGACTACTCCAATTTCATCGCCCTAAAC 725
Query 691 CGCCCTGCCTCTGAATTTCCAGCATTCATAAAGCAAGTTGTGGATCAAACAGAGGTGAAT 750
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CGCCCTGCCTCTGAATTCCCAGCATTCATAAAGCAAGTTGTGGATCAAACAGAGGTGAAT 785
Query 751 TTGAGGCGGATCCACGCTTTGGGAGTGAAAAAGATTGCAGTACCATCGCTGCAACCGCTC 810
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 786 TTGAGACGGATCCACGCTTTGGGAGTGAAAAAGATTGCAGTACCATCCCTGCAACCGCTT 845
Query 811 GGTTGTCTCCCTCCCTTCACCTTTGTATCATCGTTCCAGCGTTGCAACGAGACACAAAAC 870
|||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||
Sbjct 846 GGTTGTCTCCCTCCCTTCACATTCGTAACCTCGTTCCAGCGTTGCAACGAGACACAAAAC 905
Query 871 GCTCTAGTTAACCTCCACAACAACTTATTGCAGCAAGTTGTGGCAAAGCTCAATAACGAG 930
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GCTTTAGTTAACCTCCACAACAACTTATTGCAGCAAGTTGTGGCAAAGCTCAATAACGAG 965
Query 931 ACCAAGCAGTCTACTTTCATCATCCTTGATCTCTATAACGCTTTCTTGACTGTGTTCAAG 990
|| || ||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 966 ACTAAACAGTCGACTTTCATCATCCTTGATCTCTACAATGCTTTCTTGACTGTGTTCAAG 1025
Query 991 AACAAAGGAGCTAATCCAGGGAGTACAAGGTTTGAGAGTCCATTAAAGCCGTGTTGCGTA 1050
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AACAAAGGATCTAATCCAGGGAGTACAAGGTTTGAGAGTCCATTAAAGCCGTGTTGCGTA 1085
Query 1051 GGCGTGAGCCGCGAGTATAACTGTGGAAGTGTGGATGAGAAGGGAGTGAAGAAGTATATT 1110
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GGTGTGAGCCGCGAGTATAACTGTGGAAGTGTGGATGAGAAGGGAGTGAAGAAGTATATT 1145
Query 1111 GTATGTGATAATCCTAAATCTGCTTTCTTTTGGGATGGACTTCACCCTACAGAAGAAGGA 1170
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GTATGTGATAATCCTAAAACTGCTTTCTTTTGGGATGGACTTCACCCTACAGAAGAAGGA 1205
Query 1171 TGGAGATCGGTTTACTCTGTTTTACGCGAAAGTCTTACCGCGTCTTTGATCAAAGCGTGA 1230
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1206 TGGAGATCGGTTTACTCTGTTTTACGCGAAAGTCTTACCGCGTCTTTGATTAAAGCGTGA 1265
Query 1231 GAAACaaaaaaacacacacacacaTTTCTCTTAGGTTTCTTT-TTCTGAAGTTCAATGTT 1289
||||||||| || ||||||| ||| ||||||||| ||| || ||||| ||||||||
Sbjct 1266 GAAACAAAAGAA-ACACACAT---TTTG-CTTAGGTTT-TTTCTTATGAAGCTCAATGTT 1319
Query 1290 TGAGCTCTTTATTTCTGTTTTCAGTATCTCTTCATTCATTTGTGTTTCTATGTGTTTAAA 1349
||||| || | || ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1320 TGAGCGCTCTGTTCCTGTTTTCAGTATCTCTTCATTCATTTGTGTTTGT--GTGTTTAAA 1377
Query 1350 GATTGTGTGACTAATAAAATCTC 1372
|||||||||||||||||||||||
Sbjct 1378 GATTGTGTGACTAATAAAATCTC 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5