BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487143
Length=2796
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03640.1 | Symbols: | Protein kinase superfamily protein | ... 4429 0.0
> AT5G03640.1 | Symbols: | Protein kinase superfamily protein
| chr5:927915-930781 FORWARD LENGTH=2781
Length=2781
Score = 4429 bits (2398), Expect = 0.0
Identities = 2670/2800 (95%), Gaps = 23/2800 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCATTTGCCGGAAAGTGTGAATTTGTTGAAGAAAAAGAAGACTGTCAAAACTCT 60
||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 1 ATGGGTTCATTTGCCGGAAAGTGTGAAATAGTTGAAGAAAAAGAAGACCGTCAAAACTCG 60
Query 61 ATTGTTTACACAGCGAAATCAACGGCTATTCCACATTCTAGATCAAGCATTGTCGACGAC 120
|||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGGTTACTCAGCGAAATCAACCACTATTCCACATTCTAGATCAAGCATTGTCGACGAC 120
Query 121 AAGGATCTGGAGCGACCGGTACTGAAATTAGGTTACAGAGGTTCACTAGAAGATGACATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGATCTGGAGCGACCGGTACTGAAATTAGGTTACAGAGGTTCACTAGAAGATGACATA 180
Query 181 AACCAACTTTTCGAGTCTATAAGCATTCGAACATCCGGAATGATTCCTTCTTACCAAGTT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AACCAACTTTTCGAGTCTATAAGCATTCGAACATCAGGAATGATTCCTTCTTACCAAGTT 240
Query 241 GGTGCAAGTAGTAGCAGTAGAAACAACAATCCTTTACAACGGAATGCTTTGAAAAGTCCC 300
||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 241 GGTGCAACTAGTAGCAGTAGAAACAACACTCCTTTACAACGGAATGCTTTGAAGAGTCCC 300
Query 301 GCGAATCCCGGGGGGCCGAGATCGCCTAGCAAGAGAAATGCGGAACCAGCGAC-TCTAAA 359
|||||||||| || || |||||||||||||||||||||||||||||||||| | ||||
Sbjct 301 GCGAATCCCGCAGGACCTCGATCGCCTAGCAAGAGAAATGCGGAACCAGCGACGT-TAAA 359
Query 360 ACAAGCTTTGAGAGATTTATGCGTCACTAAGGCATCGGAAACCGCAGCTACCAAAAGAAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 360 ACAAGCTTTGAGAGATTTATGCGTCACTAAGGCATCGGAAACCGCAGCTACCAAACGGAT 419
Query 420 TCCT-A-AG-ACTAGTACTGGAGGCTCGGTTTATGGTTCTGTTTTGGTTGAACCGGGAAG 476
|||| | || ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 420 TCCTAAGAGTACTAGTACTGGAGGCTCAGTTTATGGTTCGGTTTTGGTTGAACCGGGAAG 479
Query 477 TGGAGCTAGCGAAGAAGGGAAAGCCGTTCTTGTCGAGTTACTCGGGGAGGATCAAAGCAG 536
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 480 TGGAGCTAGCGAAGAAGGGAAAGCGGTTCTTGTCGAGTTACTCGGCGAGGATCAAAGCAG 539
Query 537 TTCATCGGATAGTATATCGCAGCAGCTTCGTCTTCTTAAGATACATTCTTCGAGCCAAAA 596
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 540 TTCATCGGATAGTATATCGCAGCAGCTTCGTCTTCTGAAGATACATTCTTCTAGCCAAAA 599
Query 597 CTCTCAGACATCAAAGCGATATTGCGATGAGATGACAATACTTAAAAAACACAAGAACTT 656
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 CTCTCAGACATCAAAGCGGTATTGCGATGAGATGACAATACTTAAAAAACACAAGAACCT 659
Query 657 GTCTCTTGACGACCAAGAATTGAGTATCGAGAACAAGAACTTGGGTTCATCATCTCCTGG 716
||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||
Sbjct 660 GTCTCTTGACGACCAAGAAATGAGTATCGAGAACAAGAACTTCGGTTCATCATCGCCCGG 719
Query 717 ATCAGGGAACAATAAGACAGTGGTTGGACTGAAATCAGTTAGAAAAGTGAGGTTGTTGTA 776
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ATCAGGAAACAACAAGACCGTGGTTGGACTGAAATCAGTTAGAAAAGTGAGGTTGTTGTA 779
Query 777 TGCCAATACACCAAGTTCCACCATAGTTAACGGCAAGAGAGTGGCTAAGTTAACCAGAAC 836
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 TGCCAATACACCGAGTTCCACCATAGTTAACGGGAAGAGAGTGGCTAAGTTAACCAGAAC 839
Query 837 CATTCCACGAGGAGGAGGCGCTAAACCGGCACTAAGGAACAAAGGTTCCATGAAGAAGAA 896
||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 CATTCCAAGAGGAGGAGGAGCTAAACCTGCACTAAGGAACAAAGGTTCCATGAAGAAGAA 899
Query 897 GGCTACAAATGTGTATGATGAAGTAGATGGCTTCTATGATCCCATTGCAAAGGAACTTCT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GGCTACAAATGTGTATGATGAAGTAGATGGCTTCTATGATCCCATTGCAAAGGAACTTCT 959
Query 957 CTGCCATAGATGCCATTTCGCTTTGAAGAACACTGCAGCTAAAGAAGAGCCCTCTAAAGA 1016
||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct 960 CTGCCATAGATGCCATTTCTCTTTGAAGAACACTGCAGCTAAGGAAGATCCCTCTAAAGA 1019
Query 1017 TTCACTTGGAGAGCCAGATCTTGAGCTGAAACAGAGTGTTAAAGATGAATTGGCTTCTGA 1076
|||||||| ||| || | | ||| | | | ||| |||||||||||||||||||||
Sbjct 1020 TTCACTTGTAGAACC--A-CATGA---G-ATC--TGTGCTAAAGATGAATTGGCTTCTGA 1070
Query 1077 CTTCTCCAGCTCAAGCTATGAGAGCTCTCATGAGATCGGTGCTAGTGCAGAGACCAAACT 1136
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1071 TTTCTCCAGCTCAAGCTATGAGAGCTCGCATGAGATCAGTGCTAGTGCAGAGACCAAACT 1130
Query 1137 TGATAAGATAAGAAGCTCTCTGGATTTGATGAATACAGAGACCCCTCAGGTTTCTTTAAC 1196
|||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 1131 TGATAAGATAAGAAGCTCTCTGGATTTGATGAATTCAGAGACCTCTCACGTTTCTTTAAC 1190
Query 1197 ATCTGCATTCCGTAACAAGAACATCGAAGATGTTCCTGAATACGGCAACAATGAGATCAT 1256
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1191 ATCTGCATTCCGTAATAAGAACATCAAAGATGTTTCTGAATACGGCAACAATGAGATCAT 1250
Query 1257 TGAGGAAGATTCTCTATCTGGCAAAGAAGTTGATCATAAAGATTCTGTATTTATGTCGGA 1316
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1251 GGAGGAAGATTCTCTATCTGGCAAAGAAGTTGATCAGAAAGATTCTGTCTTTATGTCGGA 1310
Query 1317 ACAGAGTGTGGAGATTGGTTCTTTCAGTGAGAAATCTGTTGTGATGAATCCAGATAGTCC 1376
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 ACAGAGCGTGGAGATTGGTTCTTTCAGTGAGAAATCTGTTGTGATGAATCCAGATAGTCC 1370
Query 1377 TCCaaaaaaaCTCAGCTTAGACGGAGCAGCCATTGAAGATGTCAAGGAAAACTCAGAAAT 1436
|||||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1371 TCCAAACAAACTCAGTTTAGGCGGAGCAGCCATTGAAGATGTCAACGAAAACTCAGAAAT 1430
Query 1437 CGGAAACAAAGGCGAGGAATGTATCGGATACAACAGTTCAAGCACTAGTATCAGCGAGGA 1496
| |||||||||| | | ||||||||||||||||| ||| ||||||||||||||
Sbjct 1431 CATAAACAAAGGC-------G-A-CGGATACAACAGTTCAACCACGAGTATCAGCGAGGA 1481
Query 1497 AGAAGTACAACAACAGAGTAATAATATAATGACAAGGTCTAGCTTTGGAAACAGACCTCA 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AGAAGTACAACAACAGAGTAATAATATAATGACAAGGTCTAGCTTTGGAAACAGACCTCA 1541
Query 1557 TATGTCTAAGGATGTGAGATGGGAAGCTATTCAGCATATAAGGGCACAACATGGGCTTGG 1616
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1542 TATGTCTAAGGATGTGAGATGGGAAGCTATTCAGCATATAAGGGCACAACACGGGCTTGG 1601
Query 1617 TTCATTGGGTCTTAGGCATTTTAATCTTCTGAAGAAGCTCGGTTGCGGAGATATAGGAAC 1676
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1602 TTCATTGGGTCTTAGGCATTTCAATCTTCTGAAGAAGCTCGGCTGCGGAGATATTGGAAC 1661
Query 1677 GGTTTATCTCGCTGAGCTTACGGGAACAAACTGTTTGTTTGCTATAAAAGTGATGGATAA 1736
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 GGTTTATCTCGCTGAGCTCACGGGAACAAACTGTTTGTTTGCTATAAAAGTGATGGATAA 1721
Query 1737 TGAATTCTTGGAGAGAAGGAACAAGATGTCTAGGGCTCAAACTGAGAAAGATATTCTCAA 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 TGAATTCTTGGAGAGAAGGAACAAGATGTCTAGGGCTCAAACTGAGAAAGATATTCTCAA 1781
Query 1797 AATGCTTGATCACCCGTTTCTTCCAACGTTATACGCTCACTTCACATCAGATAACTTATC 1856
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1782 AATGCTTGATCACCCGTTTCTTCCAACGTTATACGCTCACTTCACTTCGGATAACTTATC 1841
Query 1857 TTGTTTGGTCATGGAATGTTGTCCGGGAGGCGATTTACATGTCTTAAGGCAGAAGCAGCC 1916
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1842 TTGTTTGGTCATGGAATGTTGTCCGGGAGGTGATTTACATGTCTTAAGGCAGAAGCAGCC 1901
Query 1917 CGGGAGGTGGTTTCCCGAGCCAGCGGCTAGGTTCTATGTCGCGGAGGTGCTTCTCGCATT 1976
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1902 CGGAAGGTGGTTTCCCGAGCCAGCAGCTAGGTTCTATGTCGCGGAGGTGCTTCTTGCATT 1961
Query 1977 GGAGTATTTGCATATGCTCGGGGTTATATACCGAGATTTGAAGCCCGAGAACATTTTGGT 2036
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1962 GGAGTATTTGCATATGCTCGGGGTAATATACCGAGATTTGAAGCCCGAGAACATTTTGGT 2021
Query 2037 GCGCGATGATGGACATATCATGGTGACAGATTTTGATCTCTCTTTGAGGTGTACGGTGAG 2096
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2022 ACGTGATGATGGACATATCATGGTGACAGATTTTGATCTCTCTTTGAGGTGTACCGTGAG 2081
Query 2097 CCCAACGCTTCTTAACTCATCATCTCCGCTCCATGCTGATGCAATGAGACTCTCTTCGGG 2156
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2082 CCCAACGCTTCTAAACTCATCATCTCCACTCCATGCGGATGCAATGAGACTCTCTTCGGG 2141
Query 2157 TAGCCGCACTGGATCTAACTGCATCGAGCCATCATGTTTCCGCCCTAAACTTTCCCGCGG 2216
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2142 TAGCCGCACTGGATCTAACTGCATCGAGCCATCGTGTTTCCGCCCTAAACTCTCCCGCGG 2201
Query 2217 ATCCGGGACCAAGAAAAAAGGCAAACAACACCGCATAATGATGAAAAAACTCAAGAAATC 2276
||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2202 ATCAGGGCCCAAGAAAAAAGGCAAACAACACCGCATGATGATGAAAAAACTCAAGAAATC 2261
Query 2277 TGACCTAATCGCACGGTTCAAATCATTGCCACAGCTTGTGGCAGAACCAACAGATGCAAG 2336
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2262 TGACCTAATCGCGCGGTTCAAATCATTGCCACAGCTCGTGGCAGAACCAACAGATGCGAG 2321
Query 2337 ATCAAACTCTTTTGTTGGAACACACGAGTATCTCGCACCAGAGATCATTAAAGGCGAAGG 2396
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 2322 ATCAAACTCTTTTGTTGGAACACACGAGTATCTCGCGCCCGAGATCATTAAAGGAGAAGG 2381
Query 2397 TCACGGTGCTGCCGTTGACTGGTGGACATTTGGGATCTTTCTATATGAGCTTCTTTACGG 2456
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 TCACGGTGCTGCGGTTGACTGGTGGACATTTGGGATCTTTCTATATGAGCTTCTTTACGG 2441
Query 2457 GAAAACTCCATTCAAAGGTGCTACTAATGAGGAGACTATAGCTAATGTGGTGCTTCAGAG 2516
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2442 GAAAACTCCATTCAAAGGAGCTACTAATGAGGAGACTATAGCTAATGTGGTGCTTCAGAG 2501
Query 2517 CTTGAAGTTTCCTGATAACCCTAATGTGAGTTTCCAAGCTAAGGATCTTATAAGAGGTTT 2576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 CTTGAAGTTTCCTGATAACCCTAATGTGAGTTTCCAAGCTAAGGATCTTATAAGAGGTTT 2561
Query 2577 GTTGGTCAAGGAACCTGAGAACCGGTTAGGAACAGAGAAAGGAGCGGCGGAGATAAAACG 2636
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2562 GTTGGTCAAGGAACCTGAGAACCGGTTAGGGACAGAGAAAGGAGCAGCGGAGATAAAACG 2621
Query 2637 GCATGCGTTCTTCGAAGGCTTGAACTGGGCGTTGATCCGGTGTGCGATCCCGCCTGAGCT 2696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2622 GCATGCGTTCTTCGAAGGCTTGAACTGGGCGTTGATCCGGTGTGCGATCCCGCCTGAGCT 2681
Query 2697 TCCGGATTTTTATGACTATGGAGTTCCGAACCATGAAGGGAATAGCAATTACTTAGATTG 2756
||||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 2682 TCCGGATTTCTATGACTATGGAGTTCCTAATCAAGAAGGGAAAAGCAATTACTTAGATTG 2741
Query 2757 CAAGGCAGTTGGGGAACATCTTGAGTTTGAGTTATTCTAG 2796
||||||||||||||||||||||||||||||||||||||||
Sbjct 2742 CAAGGCAGTTGGGGAACATCTTGAGTTTGAGTTATTCTAG 2781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138912265167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5