BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487147
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03670.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 2880 0.0
AT5G03668.1 | Symbols: | other RNA | chr5:947101-948967 REVERS... 673 0.0
> AT5G03670.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G36420.1);
Has 700 Blast hits to 624 proteins in 104 species: Archae
- 0; Bacteria - 18; Metazoa - 333; Fungi - 60; Plants - 73;
Viruses - 24; Other Eukaryotes - 192 (source: NCBI BLink). |
chr5:947146-950171 FORWARD LENGTH=1989
Length=1989
Score = 2880 bits (1559), Expect = 0.0
Identities = 1857/1995 (93%), Gaps = 44/1995 (2%)
Strand=Plus/Plus
Query 1 ACATTTTTTGAATCACCATCGACATC-TT-TCT-TTC---TTC-TCTCT-T-TCTGACTC 51
|||||||||||||||||||| ||||| || ||| ||| ||| ||||| | ||||| ||
Sbjct 1 ACATTTTTTGAATCACCATCAACATCTTTCTCTCTTCTTTTTCTTCTCTCTATCTGAGTC 60
Query 52 CAGAAACTTTCACTTTAATTACAAACTGAAATAA-ATTGAAACATTTGAATAAACTCAAG 110
||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||||| |
Sbjct 61 CAGAAACATTCACATTAATTACAAACTGAAAAAACATTGAAACTTTTGAATAAACTCACG 120
Query 111 AAAAGTACTCTGTTTTTTCTTCTCACTCTGTTTCTTGTTGATACAATGGCGTCTCAGAGA 170
| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGTACTCTGTTTTCTCTTCTTACTCTGTTTCTTGTTGATACAATGGCGTCTCAGAGA 180
Query 171 CATTTAAAAGATCTTCTTGAAGAAGATCAAGAACCGTTTCAGCTTCAAAGTTACATCTCA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CATTTAAAAGATCTTCTTGAAGAAGATCAAGAACCGTTTCAGCTTCAAAGTTACATCTCA 240
Query 231 GACCGACGTTGCCAAATCAATGCTCACGTAACGCATTTACAGGTCAAGAAACGCAGACCT 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GACCGACGTTGCCAAATCAATGCTCACGTAACGCATTTACAGGTCAAGAAACGCAGACCC 300
Query 291 GTCTCTCAAAACGCTGGACTTCCGTCGCGTTTCTGCCGTAACGCTTGTTTCTTCTCTCTT 350
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 301 ATCTCTCAAAACGCTGGACTTCCCTCGCGTTTCTGCCGCAACGCTTGTTTCTTCTCTCTC 360
Query 351 CGTGAATCTCCCGACCCGAAGAAGTCTCCACTGTTCGAACTCAAGTCACCAAATCGGAGC 410
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CGTGAATCTCCTGACCCGAAAAAGTCTCCACTCTTCGAACTCAAGTCACCAAATCGGAGC 420
Query 411 CAAAACGCGGTTTTCGTCAATATACCGGCGAGAACCGCTTCGATACTTCTAGAAGCTGCG 470
||||||||| ||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct 421 CAAAACGCGATTTTCGTCAATATACCGGCGAGAACTGCTTCCATTCTACTAGAAGCTGCG 480
Query 471 GTTAGGATACAGAAACAGAGTTCAGAAGTGTCTAAAACAAGAACACGAAACGCCGGAAAC 530
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GTTAGGATACAGAAACAGAGTTCAGAAGTGTCTAAAACAAGAACACGAAACGCAGGAAAC 540
Query 531 GCGTTTGGTATATTCGGGTCAGTTTTAAAGAAGCTAACGAACCGAAAGAAACGCGAAATC 590
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 541 GCGTTTGGTATATTTGGGTCAGTTCTAAAGAAGCTAACGAACCGGAAGAAACGCGAAATC 600
Query 591 AGCGGCGGTAAAGACGTTGGTCGCGTTTCATCTTCCTCGGTGAAAGATATGTTGAGATGG 650
|||||||| ||||| | |||||||||||| || || || || ||||||||||||||||||
Sbjct 601 AGCGGCGGCAAAGAAGCTGGTCGCGTTTCTTCCTCTTCTGTTAAAGATATGTTGAGATGG 660
Query 651 GAATCTCCGGTCGTACGTAAAATAGTCACAAGAAAATCTAAACGCAAAGCAGAAGAAGAA 710
||||||||||| |||||||||||||||||||||||||| ||||| || | |||||||||
Sbjct 661 GAATCTCCGGTTGTACGTAAAATAGTCACAAGAAAATCCAAACGTAA--C-GAAGAAGAA 717
Query 711 AACGCTTCCTCCCAAACGCAGAAAGTCGCGTCTGAAACGCAGTTCTCACGGAGGTCAAGT 770
|||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct 718 AACGCTTCTTCCCAAACGCATAAAATCGCGTCTGAAACGCATTTCTCACGGAGGTCAAGT 777
Query 771 AGTAGTGGCGTTTGGTCAGAGAGTGTTACCAACGGAGAGAGATCTTGGGACGTTGATTTC 830
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 778 AGTAGTGGTGTTTGGTCAGAGAGTGTTACGAACGGAGAGAGATCTTGGGACGTTGATTTC 837
Query 831 GAAACGTCCATTAGCACGAGCAGCCGATCTAACGGTTCAGATGAGTTTGCGATGATGATG 890
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GAAACGTCGATTAGCACCAGCAGCCGATCTAACGGTTCAGATGAGTTTGCGATGATGATG 897
Query 891 AACGGTCAAGATTTATCCGAAGATAAACGTTTTTGTGAAAGCCCGTTTCATTTTGTTCTC 950
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AACGGTCAAGATTTATCGGAAGATAAACGTTTTTGTGAAAGCCCGTTTCATTTTGTTCTC 957
Query 951 CAAACAACAATGCCTTCTAACGGCGGTTTCAGAACGCCGAATTTCTCATCACCTGCGGCT 1010
||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 CAAACAA---TGCCATCAAACGGCGGTTTCAGAACGCCGAATTTCTCATCGCCTGCGGCT 1014
Query 1011 TCTCCACGCTACGATTGTCAAGAGCA-G-ATGAAGGACAGTTATGAGGTagagaagctaa 1068
||||||||| |||||||||| ||| | | | ||| | |||||||| |||||||||||||
Sbjct 1015 TCTCCACGCCACGATTGTCATGAG-ATGGAAAAAG-AGAGTTATGAAGTAGAGAAGCTAA 1072
Query 1069 agaaactagaaatggaggaagaggaagaagaaaaagaacagagCAGCCCAGTTTCAGTTT 1128
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1073 AGAAACTAGAAATGGAGGAAGAGGAAGAAGAAAAAGAACAGAGCAGCCCAGTATCAGTTT 1132
Query 1129 TGGACCCTCCATTTCAGGACGATGACGAAGACATTCACATGGATGACAATAACATCCCTT 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TGGACCCTCCATTTCAGGACGATGACGAAGACATTCACATGGATGACAATAACATCCCTT 1192
Query 1189 CCAGCTTCAGATCTGTACAAACAGCAAAGCATCTGCTACTACAGAAGCTTTGTAGATTCG 1248
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CCAGCTTCAGATCTGTACAAAAAGCAAAGCATCTGCTACTACAGAAGCTTTGTAGATTCG 1252
Query 1249 AGCAACTTGCGGGTTTGGATCCCATGGAACTCGAGAAAAGAATGTCGGACCAAGAGACCG 1308
|||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1253 AGCAACTTGCGGGTTTAGATCCCATGGAACTCGAGAAACGAATGTCGGATCAAGAGACCG 1312
Query 1309 AGGA--AG-AGGATGA--A-GAAGAAGAGATGAAAAGTCTTTATCATTGTGAAATTATAA 1362
|||| || |||| || | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1313 AGGAGGAGGAGGAGGAGGAAGAAGAAGAGATGAAAAGTCTTTATCATTGTGAGATTATAA 1372
Query 1363 CTCAGAGAGTTCTTAAAATGTACTTTGAAGAGATGGTAGAAGTTCCGGAAGGCGTAGAAG 1422
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 CTCAGAGAGTTCTTAAAACATACTTTGAAGAGATGGTAGAAGTTCCGGAAGGCGTAGAAG 1432
Query 1423 CATTGATCTCAGACCTTGCAGCAGAGGAATTGCAAAGCGACATCGACAGTGAAGCTGAAG 1482
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1433 CATTGATCTCAGACCTTGCAGCAGAGGAATTGCCAAGCGACATCGACGGTGAAGCTGAAG 1492
Query 1483 CCGCAACTGTAGCCAAAAGGGTATGCGAGAGGTTGACATCTTGGAGAGATGTGGAATCAA 1542
|||| | |||||||||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1493 CCGCGATTGTAGCCAAAAGGGTATGCGAGAGATTGAGATCTTGGAGAGATGTGGAGTCAA 1552
Query 1543 ACACAATCGATATGATGGTCGAACATGATTTCAGAACAGAAAGTTTGGGATTATGGAGAT 1602
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1553 ACACAATCGATATGATGGTCGAACATGATTTCAGAACAGAGAGATTGGGATTATGGAGAT 1612
Query 1603 CAAAGAACGACGCAGAAGTCGCAGAGACGGTTTTGGATATCGAGTTTGAGATTTTTGAGG 1662
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1613 CAAAGAACGACGCAGATGTCTCAGAGACGGTTTTGGATATCGAGTTTGAGATTTTTGAGG 1672
Query 1663 ATTTGGTTGAAGAACTT-TCAGGAGACATTGGCGGGGATTGGTGATCGACATCATATGAT 1721
|||||||||||||| || |||| |||||||||||| | ||||||||| | |||| |||
Sbjct 1673 ATTTGGTTGAAGAA-TTATCAGAAGACATTGGCGGAAACCGGTGATCGATAACATACGAT 1731
Query 1722 TCTATATTCGGGAAGCTTCCGTCGCAAGTAATGACAAACTAACATGCGTTGTTTAGATGG 1781
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1732 TCTATATTCGGGTAGCTTCCGTCGCAAGTAATGACAAACTAACCTGCGTTGTTTAGATGG 1791
Query 1782 ATGGTGGGT---G---T--ATGTAAAAGTTTTGGTTGATGAGAGAGAGTATTAAGATTTG 1833
||||||||| | | ||||||||||||||||||||||||| ||||||||||||
Sbjct 1792 ATGGTGGGTTCAGGGGTGTATGTAAAAGTTTTGGTTGATGAGAG----TATTAAGATTTG 1847
Query 1834 TGTAATTCCTTATGAGAACTGAGAAATTCATAGGATCAGTGAAGTTCTCTAAACTCTCGG 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 TGTAATTCCTTATGAGAACTGAGAAATTCATAGGATCAGTGAAGTTCTCTAAACTCTCGG 1907
Query 1894 ATCAGGTTCTCGAGTTGGGTCGAGGTTCTCTGATTCAGTAGTTGTTAGAGGAA-ATTTGG 1952
||| ||||||||||||||||||||| |||||||||| |||||||| | | | | ||
Sbjct 1908 ATCGGGTTCTCGAGTTGGGTCGAGGCTCTCTGATTCGGTAGTTGT-ACAATTAGAG--GG 1964
Query 1953 ATACAAATCGAATTT 1967
|||||||||||||||
Sbjct 1965 ATACAAATCGAATTT 1979
> AT5G03668.1 | Symbols: | other RNA | chr5:947101-948967 REVERSE
LENGTH=1667
Length=1667
Score = 673 bits (364), Expect = 0.0
Identities = 433/466 (93%), Gaps = 6/466 (1%)
Strand=Plus/Minus
Query 569 GAACCGAAAGAAACGCGAAATCAGCGGCGGTAAAGACGTTGGTCGCGTTTCATCTTCCTC 628
||| || ||||||||||||||||||||||| ||||| | |||||||||||| || || ||
Sbjct 1244 GAAGCGGAAGAAACGCGAAATCAGCGGCGGCAAAGAAGCTGGTCGCGTTTCTTCCTCTTC 1185
Query 629 GGTGAAAGATATGTTGAGATGGGAATCTCCGGTCGTACGTAAAATAGTCACAAGAAAATC 688
|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1184 TGTTAAAGATATGTTGAGATGGGAATCTCCGGTTGTACGTAAAATAGTCACAAGAAAATC 1125
Query 689 TAAACGCAAAGCAGAAGAAGAAAACGCTTCCTCCCAAACGCAGAAAGTCGCGTCTGAAAC 748
||||| || | ||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1124 CAAACG-TAA-C-GAAGAAGAAAACGCTTCTTCCCAAACGCATAAAATCGCGTCTGAAAC 1068
Query 749 GCAGTTCTCACGGAGGTCAAGTAGTAGTGGCGTTTGGTCAGAGAGTGTTACCAACGGAGA 808
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1067 GCATTTCTCACGGAGGTCAAGTAGTAGTGGTGTTTGGTCAGAGAGTGTTACGAACGGAGA 1008
Query 809 GAGATCTTGGGACGTTGATTTCGAAACGTCCATTAGCACGAGCAGCCGATCTAACGGTTC 868
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1007 GAGATCTTGGGACGTTGATTTCGAAACGTCGATTAGCACCAGCAGCCGATCTAACGGTTC 948
Query 869 AGATGAGTTTGCGATGATGATGAACGGTCAAGATTTATCCGAAGATAAACGTTTTTGTGA 928
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 947 AGATGAGTTTGCGATGATGATGAACGGTCAAGATTTATCGGAAGATAAACGTTTTTGTGA 888
Query 929 AAGCCCGTTTCATTTTGTTCTCCAAACAACAATGCCTTCTAACGGCGGTTTCAGAACGCC 988
||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct 887 AAGCCCGTTTCATTTTGTTCTCCAAACAA---TGCCATCAAACGGCGGTTTCAGAACGCC 831
Query 989 GAATTTCTCATCACCTGCGGCTTCTCCACGCTACGATTGTCAAGAG 1034
|||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 830 GAATTTCTCATCGCCTGCGGCTTCTCCACGCCACGATTGTCATGAG 785
Score = 544 bits (294), Expect = 2e-153
Identities = 332/350 (95%), Gaps = 4/350 (1%)
Strand=Plus/Minus
Query 119 TCTGTTTT-TTCTTCTC-ACTCTGTTTCTTGTTGATACAATGGCGTCTCAGAGACATTTA 176
||| |||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 TCT-TTTTCTTC-TCTCTATTCTGTTTCTTGTTGATACAATGGCGTCTCAGAGACATTTA 1530
Query 177 AAAGATCTTCTTGAAGAAGATCAAGAACCGTTTCAGCTTCAAAGTTACATCTCAGACCGA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1529 AAAGATCTTCTTGAAGAAGATCAAGAACCGTTTCAGCTTCAAAGTTACATCTCAGACCGA 1470
Query 237 CGTTGCCAAATCAATGCTCACGTAACGCATTTACAGGTCAAGAAACGCAGACCTGTCTCT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1469 CGTTGCCAAATCAATGCTCACGTAACGCATTTACAGGTCAAGAAACGCAGACCCATCTCT 1410
Query 297 CAAAACGCTGGACTTCCGTCGCGTTTCTGCCGTAACGCTTGTTTCTTCTCTCTTCGTGAA 356
||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1409 CAAAACGCTGGACTTCCCTCGCGTTTCTGCCGCAACGCTTGTTTCTTCTCTCTCCGTGAA 1350
Query 357 TCTCCCGACCCGAAGAAGTCTCCACTGTTCGAACTCAAGTCACCAAATCGGAGCCAAAAC 416
||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1349 TCTCCTGACCCGAAAAAGTCTCCACTCTTCGAACTCAAGTCACCAAATCGGAGCCAAAAC 1290
Query 417 GCGGTTTTCGTCAATATACCGGCGAGAACCGCTTCGATACTTCTAGAAGC 466
||| ||||||||||||||||||||||||| ||||| || || ||||||||
Sbjct 1289 GCGATTTTCGTCAATATACCGGCGAGAACTGCTTCCATTCTACTAGAAGC 1240
Score = 291 bits (157), Expect = 2e-77
Identities = 161/163 (99%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 1047 AGTTATGAGGTagagaagctaaagaaactagaaatggaggaagaggaagaagaaaaagaa 1106
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 AGTTATGAAGTAGAGAAGCTAAAGAAACTAGAAATGGAGGAAGAGGAAGAAGAAAAAGAA 157
Query 1107 cagagCAGCCCAGTTTCAGTTTTGGACCCTCCATTTCAGGACGATGACGAAGACATTCAC 1166
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 CAGAGCAGCCCAGTATCAGTTTTGGACCCTCCATTTCAGGACGATGACGAAGACATTCAC 97
Query 1167 ATGGATGACAATAACATCCCTTCCAGCTTCAGATCTGTACAAA 1209
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 ATGGATGACAATAACATCCCTTCCAGCTTCAGATCTGTACAAA 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97439257845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5