BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487148 Length=2137 Score E Sequences producing significant alignments: (Bits) Value AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like superf... 3336 0.0 > AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like superfamily protein | chr5:957744-961032 FORWARD LENGTH=2162 Length=2162 Score = 3336 bits (1806), Expect = 0.0 Identities = 2044/2153 (95%), Gaps = 40/2153 (2%) Strand=Plus/Plus Query 1 TTCTCTCtttttttGGAATTAAAAGGTTTAACCTTTACCGtttttttCCCTTCACTATCG 60 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 15 TTCTCTCTTTTTTTGGAATTAAAAGGTTTAACCTTTACC-TTTTTTTCCCTTCACTATCG 73 Query 61 ATAGATTGATCTTCTCTTTCAGCTGAATAGAAATCTGAAAACAATGGATCAAGATCAGCA 120 ||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct 74 ATA-ATTGATCTTCTCTTTCGGCTGAATATAAATCTGAAAA-AATGGATCAAGATCAGCA 131 Query 121 TCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACCAC 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 132 TCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACTAC 191 Query 181 GACAACACCGTCTACTTCTTCTCATTTTCCCTCTGAtttttttGGTTTTAACCTCGCTCC 240 |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 192 TACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTCTTCGGTTTTAACCTTGCTCC 251 Query 241 TGTGCAGCCACCGCCGCACCGTCTTCATCAGTTCACTACTGATCCAGATATGGGTTTCTT 300 |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 252 GGTGCAGCCACCGCCACACCGTCTTCATCAGTTCACTACTGATCAAGATATGGGTTTCTT 311 Query 301 GCCACGTGGCATACATGGATTGGGTGGAGGAGGTTCTTCGACGGCTGGAAATAACAGTAA 360 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 312 GCCACGTGGCATACATGGATTGGGT---GGAGGTTCTTCAACGGCTGGAAATAACAGTAA 368 Query 361 CTTAAACGCGAGTACTAGTGGTGGAGGAGGTGTTGGGTTTAGTGGGTTTCTTGACGGTGG 420 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 369 CTTAAACGCGAGTACTAGTGGTGGAGGA---GTTGGGTTTAGTGGGTTTCTTGACGGTGG 425 Query 421 TGGTTTCGGCGGCGGAGGT-GGAGGAGAGGGTGGAGGAACTGGAAGGTGGCCGAGACAAG 479 |||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 426 TGGTTTCGGCAGCGGA-GTAGGAGGAGACGGTGGAGGAACTGGAAGGTGGCCGAGACAAG 484 Query 480 AAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATC 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 AAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATC 544 Query 540 AAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAA 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 AAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAA 604 Query 600 GGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTTTACAAATACTATAGGAAGACTA 659 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 605 GGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTGTACAAATACTATAGGAAGACTA 664 Query 660 AAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCAGGCAGCTCGAAG 719 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 665 AAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCCGGCAGCTCGAAG 724 Query 720 CACTCTACGGCGATTCCAATACCTTGGTTTCTTGTCCTAATCATAACACGCAGTTCATGA 779 | || ||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||| Sbjct 725 CGCTATACGGGGATTCTAATAACTTGGTTTCTTGTCCCAATCATAACACGCAGTTCATGA 784 Query 780 GCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAATGTTACTACAACAACGTCCA 839 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 785 GCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAACGTTACTACAACAACGTCCA 844 Query 840 ACATCCATAACGTCGATAGTGTTCATGGTTTTCATCAGAGCCTTAGTCTTTCTAACAACT 899 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 845 ACATCCATAACGTTGATAGTGTTCATGGTTTTCATCAAAGCCTTAGTCTTTCTAACAACT 904 Query 900 ACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTA 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 905 ACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTA 964 Query 960 GAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAA 1019 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 965 GAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAA 1024 Query 1020 GGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAG 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1025 GGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAG 1084 Query 1080 AGGAGCAACGGATGATGAAGGAAGAGGAATGGAGGAAGATTGAAGCTGCACGGATTGATA 1139 |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1085 AGGAACAACGGATGATGAAAGAAGAGGAATGGAGGAAGATTGAAGCTGCAAGGATTGATA 1144 Query 1140 AAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTCGCGGTGA 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1145 AAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTTGCGGTGA 1204 Query 1200 TTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAACCGTTATGTTCGTCGCCAG 1259 |||||||||||||||||||||||||||||||||||||||| ||| | ||||| || || | Sbjct 1205 TTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAGCCGCTGTGTTCATCCCCGG 1264 Query 1260 AAGAGATTA-A--TGGTAATAATGAGATCCGAAACAATAGTGAGA-ATCAGAATGAGAAT 1315 |||||| | | |||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1265 AAGAGAGGACAAATGGTAATAATGAGATCCGAAACAATAGTGAGACA-CAGAATGAGAAT 1323 Query 1316 GGAAGCGATCAAACAATGACTAACAATGTTTCTGTTAAAGGAAGTAGTAGCTGCTGGGAT 1375 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1324 GGAAGCGATCAAACGATGACTAACAATGTTTGTGTTAAAGGAAGTAGTAGCTGCTGGGGT 1383 Query 1376 GAGCAAGAGATTTTGAAGCTTATGGAGATAAGAACGAGCATGGACTCGGCGTTTCAAGAG 1435 |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1384 GAGCAAGAGATTTTAAAGCTTATGGAGATAAGAACGAGCATGGACTCGACCTTTCAAGAG 1443 Query 1436 ATATTGGGAGGGTGCTCAGATGAGTTTTTATGGGAGCAAATCGC-GTCGAAGTTGATTCA 1494 ||||| ||||||||||| ||||||||| |||||||| ||||||| | ||||||||||||| Sbjct 1444 ATATTAGGAGGGTGCTCGGATGAGTTTCTATGGGAGGAAATCGCAG-CGAAGTTGATTCA 1502 Query 1495 GTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGTAA 1554 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1503 GTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGCAA 1562 Query 1555 TGGAATGAGGAAAGAAAAGAAGCAAATGAACAAGAAAAGAAAGGATAATTCGTCGAGCTG 1614 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1563 TGGAATGAGGAAAGAAAAGAAGCAAATCAACAAGAAAAGAAAGGATAATTCGTCCAGCTG 1622 Query 1615 CGGCGTGTACTATCCGAGAAATGAAGAAAATCCAATCTACAATAATCAAGAAAGTGGATA 1674 |||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1623 CGGCGTGTACTACCCGAGAAACGAAGAAAATCCAATCTACAATAATCGAGAAAGTGGATA 1682 Query 1675 TAATGATAATGATCGGCATCAGATGAACGAACAAGGCAATGTAGGTTCTTCAACATCAAA 1734 |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1683 TAATGATAATGATCCGCATCAAATCAACGAACAAGGCAATGTAGGTTCTTCAACATCAAA 1742 Query 1735 CGCAAACGCAAACG------TAACCGCTGGAAATCCGAGCGGCGCAATGGCAGCTAGTAC 1788 |||||||||||||| ||||| |||||||||||||||| |||||||| |||||||| Sbjct 1743 CGCAAACGCAAACGCAAACGTAACCACTGGAAATCCGAGCGGTGCAATGGCTGCTAGTAC 1802 Query 1789 AAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTT 1848 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1803 AAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTT 1862 Query 1849 GAGGCTAAGTAAAGGAGAGAATCAGTAAGTAATTTCTCTCAATAATgaagaagaagaaga 1908 |||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 1863 GAGGCTCAGTAAAGAAGAGAATCAGTAAGTAATTTCTCT---TAATGAAGAAGAAGAAG- 1918 Query 1909 agaagGTAATCATGTGGTTAACTAATTCTTTTGAGTTAGCTATATATGAGATAAACCTTG 1968 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1919 -G----TAATCATGTGGTTAACTAATTCTTTTGAGTTAGCTATATATGAGATAAACCTTG 1973 Query 1969 ACTTAGCTATTATATGTCACATTATGTTTAGAAATTGAGAAATATTTGTTGGGGCTTAAC 2028 |||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| Sbjct 1974 ACTTAGCTATTATATGTCACATGCTGCTTAGAA-TTAAGAAATATTTGTTGGGGCTTAAC 2032 Query 2029 GAATTATATATCAACATATATAAGATTACAAAGTCTAAGAATTAAATCAAATTAGGCTTT 2088 ||||||||||||| |||||||||||| | | |||||||||||| ||||||||||||||| Sbjct 2033 GAATTATATATCAGCATATATAAGATGAGA--GTCTAAGAATTATATCAAATTAGGCTTT 2090 Query 2089 AACCAACG-A---TTATATATTATGTTTTCATGTATTCATTCTGTAAGACTTT 2137 |||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct 2091 AACCAACGTACGATTATATATTATGTTTTCATGTATTTATTCTGTAAGACTTT 2143 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105973350495 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5