BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487148
Length=2137
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like superf... 3336 0.0
> AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like superfamily
protein | chr5:957744-961032 FORWARD LENGTH=2162
Length=2162
Score = 3336 bits (1806), Expect = 0.0
Identities = 2044/2153 (95%), Gaps = 40/2153 (2%)
Strand=Plus/Plus
Query 1 TTCTCTCtttttttGGAATTAAAAGGTTTAACCTTTACCGtttttttCCCTTCACTATCG 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 15 TTCTCTCTTTTTTTGGAATTAAAAGGTTTAACCTTTACC-TTTTTTTCCCTTCACTATCG 73
Query 61 ATAGATTGATCTTCTCTTTCAGCTGAATAGAAATCTGAAAACAATGGATCAAGATCAGCA 120
||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 74 ATA-ATTGATCTTCTCTTTCGGCTGAATATAAATCTGAAAA-AATGGATCAAGATCAGCA 131
Query 121 TCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 132 TCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACTAC 191
Query 181 GACAACACCGTCTACTTCTTCTCATTTTCCCTCTGAtttttttGGTTTTAACCTCGCTCC 240
|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 192 TACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTCTTCGGTTTTAACCTTGCTCC 251
Query 241 TGTGCAGCCACCGCCGCACCGTCTTCATCAGTTCACTACTGATCCAGATATGGGTTTCTT 300
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 252 GGTGCAGCCACCGCCACACCGTCTTCATCAGTTCACTACTGATCAAGATATGGGTTTCTT 311
Query 301 GCCACGTGGCATACATGGATTGGGTGGAGGAGGTTCTTCGACGGCTGGAAATAACAGTAA 360
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 312 GCCACGTGGCATACATGGATTGGGT---GGAGGTTCTTCAACGGCTGGAAATAACAGTAA 368
Query 361 CTTAAACGCGAGTACTAGTGGTGGAGGAGGTGTTGGGTTTAGTGGGTTTCTTGACGGTGG 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 369 CTTAAACGCGAGTACTAGTGGTGGAGGA---GTTGGGTTTAGTGGGTTTCTTGACGGTGG 425
Query 421 TGGTTTCGGCGGCGGAGGT-GGAGGAGAGGGTGGAGGAACTGGAAGGTGGCCGAGACAAG 479
|||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 426 TGGTTTCGGCAGCGGA-GTAGGAGGAGACGGTGGAGGAACTGGAAGGTGGCCGAGACAAG 484
Query 480 AAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATC 544
Query 540 AAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 AAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAA 604
Query 600 GGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTTTACAAATACTATAGGAAGACTA 659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 605 GGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTGTACAAATACTATAGGAAGACTA 664
Query 660 AAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCAGGCAGCTCGAAG 719
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 665 AAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCCGGCAGCTCGAAG 724
Query 720 CACTCTACGGCGATTCCAATACCTTGGTTTCTTGTCCTAATCATAACACGCAGTTCATGA 779
| || ||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 725 CGCTATACGGGGATTCTAATAACTTGGTTTCTTGTCCCAATCATAACACGCAGTTCATGA 784
Query 780 GCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAATGTTACTACAACAACGTCCA 839
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 785 GCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAACGTTACTACAACAACGTCCA 844
Query 840 ACATCCATAACGTCGATAGTGTTCATGGTTTTCATCAGAGCCTTAGTCTTTCTAACAACT 899
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 845 ACATCCATAACGTTGATAGTGTTCATGGTTTTCATCAAAGCCTTAGTCTTTCTAACAACT 904
Query 900 ACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 ACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTA 964
Query 960 GAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 GAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAA 1024
Query 1020 GGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 GGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAG 1084
Query 1080 AGGAGCAACGGATGATGAAGGAAGAGGAATGGAGGAAGATTGAAGCTGCACGGATTGATA 1139
|||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1085 AGGAACAACGGATGATGAAAGAAGAGGAATGGAGGAAGATTGAAGCTGCAAGGATTGATA 1144
Query 1140 AAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTCGCGGTGA 1199
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1145 AAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTTGCGGTGA 1204
Query 1200 TTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAACCGTTATGTTCGTCGCCAG 1259
|||||||||||||||||||||||||||||||||||||||| ||| | ||||| || || |
Sbjct 1205 TTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAGCCGCTGTGTTCATCCCCGG 1264
Query 1260 AAGAGATTA-A--TGGTAATAATGAGATCCGAAACAATAGTGAGA-ATCAGAATGAGAAT 1315
|||||| | | |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1265 AAGAGAGGACAAATGGTAATAATGAGATCCGAAACAATAGTGAGACA-CAGAATGAGAAT 1323
Query 1316 GGAAGCGATCAAACAATGACTAACAATGTTTCTGTTAAAGGAAGTAGTAGCTGCTGGGAT 1375
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1324 GGAAGCGATCAAACGATGACTAACAATGTTTGTGTTAAAGGAAGTAGTAGCTGCTGGGGT 1383
Query 1376 GAGCAAGAGATTTTGAAGCTTATGGAGATAAGAACGAGCATGGACTCGGCGTTTCAAGAG 1435
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1384 GAGCAAGAGATTTTAAAGCTTATGGAGATAAGAACGAGCATGGACTCGACCTTTCAAGAG 1443
Query 1436 ATATTGGGAGGGTGCTCAGATGAGTTTTTATGGGAGCAAATCGC-GTCGAAGTTGATTCA 1494
||||| ||||||||||| ||||||||| |||||||| ||||||| | |||||||||||||
Sbjct 1444 ATATTAGGAGGGTGCTCGGATGAGTTTCTATGGGAGGAAATCGCAG-CGAAGTTGATTCA 1502
Query 1495 GTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGTAA 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1503 GTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGCAA 1562
Query 1555 TGGAATGAGGAAAGAAAAGAAGCAAATGAACAAGAAAAGAAAGGATAATTCGTCGAGCTG 1614
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1563 TGGAATGAGGAAAGAAAAGAAGCAAATCAACAAGAAAAGAAAGGATAATTCGTCCAGCTG 1622
Query 1615 CGGCGTGTACTATCCGAGAAATGAAGAAAATCCAATCTACAATAATCAAGAAAGTGGATA 1674
|||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1623 CGGCGTGTACTACCCGAGAAACGAAGAAAATCCAATCTACAATAATCGAGAAAGTGGATA 1682
Query 1675 TAATGATAATGATCGGCATCAGATGAACGAACAAGGCAATGTAGGTTCTTCAACATCAAA 1734
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1683 TAATGATAATGATCCGCATCAAATCAACGAACAAGGCAATGTAGGTTCTTCAACATCAAA 1742
Query 1735 CGCAAACGCAAACG------TAACCGCTGGAAATCCGAGCGGCGCAATGGCAGCTAGTAC 1788
|||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1743 CGCAAACGCAAACGCAAACGTAACCACTGGAAATCCGAGCGGTGCAATGGCTGCTAGTAC 1802
Query 1789 AAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTT 1848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 AAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTT 1862
Query 1849 GAGGCTAAGTAAAGGAGAGAATCAGTAAGTAATTTCTCTCAATAATgaagaagaagaaga 1908
|||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1863 GAGGCTCAGTAAAGAAGAGAATCAGTAAGTAATTTCTCT---TAATGAAGAAGAAGAAG- 1918
Query 1909 agaagGTAATCATGTGGTTAACTAATTCTTTTGAGTTAGCTATATATGAGATAAACCTTG 1968
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 -G----TAATCATGTGGTTAACTAATTCTTTTGAGTTAGCTATATATGAGATAAACCTTG 1973
Query 1969 ACTTAGCTATTATATGTCACATTATGTTTAGAAATTGAGAAATATTTGTTGGGGCTTAAC 2028
|||||||||||||||||||||| || |||||| || |||||||||||||||||||||||
Sbjct 1974 ACTTAGCTATTATATGTCACATGCTGCTTAGAA-TTAAGAAATATTTGTTGGGGCTTAAC 2032
Query 2029 GAATTATATATCAACATATATAAGATTACAAAGTCTAAGAATTAAATCAAATTAGGCTTT 2088
||||||||||||| |||||||||||| | | |||||||||||| |||||||||||||||
Sbjct 2033 GAATTATATATCAGCATATATAAGATGAGA--GTCTAAGAATTATATCAAATTAGGCTTT 2090
Query 2089 AACCAACG-A---TTATATATTATGTTTTCATGTATTCATTCTGTAAGACTTT 2137
|||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 2091 AACCAACGTACGATTATATATTATGTTTTCATGTATTTATTCTGTAAGACTTT 2143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105973350495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5