BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487149
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03700.1 | Symbols: | D-mannose binding lectin protein with... 1367 0.0
> AT5G03700.1 | Symbols: | D-mannose binding lectin protein with
Apple-like carbohydrate-binding domain | chr5:965874-967322
REVERSE LENGTH=1449
Length=1449
Score = 1367 bits (740), Expect = 0.0
Identities = 844/894 (94%), Gaps = 8/894 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGGTTTGTGTTTAAACTCTTTCACTCGttttttactttttttgttcgttttcttg 60
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1 ATGGAAGGTTTGTGTTTAAACTCTTTCACTCGTGTTTTACTTTTATTGTTCGTTTTCTTG 60
Query 61 gttttttCTCATAAATGGCAACGAGCCAACGCAAG-CGAACCGGTTTTGGAGCTAGTAAA 119
||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||||
Sbjct 61 GTTTTTTCTCATAAATGGCAACGAGTCAACGC-GGTCGAACCGGTTTTGGAGCTGGTAAA 119
Query 120 AGGCTTTGAAGCTAAACCGGACTCGTCCATCGACTCGTTCCAGCCTCTCCTCACTGACCC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AGGCTTTGAAGCTAAACCGGACTCGTCCATCGACTCGTTCCAGCCTCTCCTCACTGACTC 179
Query 180 AAACGGTAACTTTTCATTCGGGTTTTTACGGGTAAACGGGTCACGTCTCTCTCTCGCCGT 239
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 180 AAACGGTAACTTTTCATTCGGGTTCTTAAGGGTAAACGGGTCACGTCTCTCTCTCGCCGT 239
Query 240 AACCCACCCGAATTTAACGGAGCCACTCTGGGTTTTCGACCCGACCCGTTCAGCAAGCTG 299
|||||||| ||||||||||| ||||| |||||| ||||||||||||| ||||| |||||
Sbjct 240 CACCCACCCAAATTTAACGGATCCACTATGGGTTCTCGACCCGACCCGCTCAGCTAGCTG 299
Query 300 GTCGCATAAAACGAAACTCTTCTTCAATGGCAGCCTCGTGATT-TCCGA-CCATTCTTCG 357
|||||||||||||||||||||||||||||| || ||||| ||| | ||| || ||||||
Sbjct 300 GTCGCATAAAACGAAACTCTTCTTCAATGGTAGTCTCGTAATTAT-CGATCC-TTCTTCA 357
Query 358 AGGTTAGAATGGTCAACTCACACTAACGGAGACCGACTAATACTCCGTAACGACTCAAAT 417
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 358 AGGTTAGAATGGTCAACTCATACTAACGGAGACCGTCTAATCCTCCGTAACGACTCAAAT 417
Query 418 CTCCAAGTGGTTAAAACGTCGTCCTTCGTCGAGTGGGAGAGTTTTGATTTTCCCGGAAAT 477
|| |||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 418 CTTCAAGTGGTGAAAACGTCGACGTTCGTTGAGTGGGAGAGTTTTGATTTTCCCGGAAAT 477
Query 478 ACCCTTGTGGAAAACCAGAATTTCACATCTGCCATGGCTTTGGTTTCACCCAACGGTTTA 537
||||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 ACCCTCGTCGAAAGCCAGAATTTCACATCTGCCATGGCTTTGGTTTCACCCAATGGTTTA 537
Query 538 TATTCGATGCGGTTAGGTAGCGATTTCATCGGTTTATATGCTAAGGTCAGCGAAGATTCT 597
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 538 TATTCGATGCGGTTAGGTAGCGATTTCATCGGTTTATACGCTAAAGTCAGCGAAGAGTCT 597
Query 598 CAACAGTTTTACTGGAAACACAGTGCTCTTCAAGTTAAAGCCAAAATCAAAGACGGAGCC 657
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 598 CAACAGTTTTACTGGAAACACAGTGCTCTTCAAGCTAAAGCCAAAGTCAAAGACGGAGCT 657
Query 658 GGTCCAATTCTCGCTCGGATTAACCCGAATGGTTATCTCGGTATGTACCAAACCGGTAA- 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 GGTCCAATTCTCGCTCGGATTAACCCGAATGGTTATCTCGGTATGTACCAAACCGG-AAG 716
Query 717 CATACCAATCGATGTTGAAGCGTTCAATAGTTTTCAAAGACCGGTCAACGGTTTACTAAT 776
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 TATACCAATCGATGTTGAAGCGTTTAATAGTTTTCAAAGACCGGTCAACGGTTTACTAAT 776
Query 777 TCTCCGATTAGAATCCGACGGGAATCTCCGGGGATATCTCTGGGATGGATCTCACTGGGC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCTCCGATTAGAATCCGACGGGAATCTCCGGGGATATCTCTGGGATGGATCTCACTGGGC 836
Query 837 ATTGAACTACGAAGCAATTCGTGAAACTTGCGATCTACCAAACCCGTGTGGTCC 890
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 837 ATTGAATTACGAAGCAATTCGTGAAACTTGTGATCTACCAAATCCGTGTGGTCC 890
Score = 385 bits (208), Expect = 6e-106
Identities = 232/244 (95%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 891 TAAATTGGGGTATTTTAAGGTACGTGAAGGTGTAGGGAAGAAAAAGAGTCGAGTAGGATT 950
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 TAAATTGGGTTATTTTAAGGTACGTGAAGGTGTAGGGAAGAAAAAGAGTCGAGTAGGATT 1265
Query 951 AACGGTTGGGATGTCTTTACTAGCTGCGATTGCGTTGGTTTTAATGGTGGCGATGGTTTA 1010
|||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||
Sbjct 1266 AACGGTTGGGATGTCTTTGCTTGCTGTGATTGCTTTGGTTTTAATGGTGGCGATGGTTTA 1325
Query 1011 TGTTGGGTTTAGGAATTGGAGTAGAGAGAAACGGGTACTAGAGGAAGATAATGGGCTATC 1070
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 1326 TGTCGGGTTTAGGAATTGGAGAAGAGAGAAACGGGTACTAGAAGAAGATAATGGGTTATC 1385
Query 1071 ACCCGGCCCGTATAAAAATCTTGGGTCGGATAGTTTTAGTTCCGTTGAAATGAGTCGGAG 1130
||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1386 ACCCGGCCCATATAAAAATCTCGGGTCGGATAGTTTTAATTCCGTTGAAATGAGTCGGAG 1445
Query 1131 ATGA 1134
||||
Sbjct 1446 ATGA 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5