BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487155
Length=2266
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03760.1 | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4 |... 3456 0.0
> AT5G03760.1 | Symbols: ATCSLA09, CSLA09, ATCSLA9, CSLA9, RAT4
| Nucleotide-diphospho-sugar transferases superfamily protein
| chr5:985675-990549 REVERSE LENGTH=2299
Length=2299
Score = 3456 bits (1871), Expect = 0.0
Identities = 2160/2293 (94%), Gaps = 45/2293 (2%)
Strand=Plus/Plus
Query 1 cacacacacacacacaTACCACTGTGtctcctctctctctgtttctgtttttagatctct 60
|||||||||||||||| | |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 5 CACACACACACACACACAACACTGTGTCTTCTCTCCCTCTGTTTCTGTTTTTAGATCTCT 64
Query 61 cttctctcttcttcctttccaaaaatcatcttctccttctccacctttcattatctttct 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CTTCTCTCTTCTTTCTTTCCAAAAATCATCTTCTCCTTCTCCACCTTTCATTATCTTTCT 124
Query 121 tctcttACCTAAACCCTTTAAATACAAGaaaaaaaaaaaacacagaaaaaaagaaaaaaa 180
||||||||| ||||||||||||||| |||||||||| | ||| | | |||||||
Sbjct 125 TCTCTTACCAAAACCCTTTAAATAC------AAAAAAAAAC-TA-AAACACATAAAAAAA 176
Query 181 gaaaTTGAATTCTCCTTTCTCCCGACAATCTGAGTTTTTCAGGCAGAGAAGACAGAGATT 240
| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 177 -ATATTGAATTCTCCTTTTTCCCGACAATCTGAGTTTCTCAGGCAGAGAAGACAGAGATT 235
Query 241 TTCACCGTAAGGAGaaaaaaaaaGGGAAAAACTCTGTCTCTCTGTTTCTGTTTCGTCCTT 300
|||||||||||| | |||||| |||||||||||||||||||||||||||||||||||
Sbjct 236 TTCACCGTAAGG-G--CAAAAAA-CGAAAAACTCTGTCTCTCTGTTTCTGTTTCGTCCTT 291
Query 301 -C--GG-TTTGATTTCTTACACCACAAGAGACTTCTTTAAAGAATCTCACATTGTTCCCT 356
| || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 292 CCTTGGCTTTGATTTCTTACACCAAAAGAGACATCTTTAAAGAATCTCACATTGTTCCCT 351
Query 357 ATTGCGTGTCTCACAAGAAAATCCTT--TATACGGATCTAGGGTT--CT----TG----- 403
||||| |||||||||||| ||||||| | || || ||| | || || ||
Sbjct 352 ATTGCTTGTCTCACAAGAGAATCCTTGATCTAGGGTTCT-TGCTTCCCTCCCCTGTTTTT 410
Query 404 --C--T---TCCCTCCCCTGtttt-tttCT-CTCTCGCCGGAGTAAGAAGAAATGGAGCT 454
| | | ||||| ||||||| ||| | ||||| ||||||||||||| ||||||||
Sbjct 411 TTCTTTAAATTCCTCCTCTGTTTTCTTTTTGTTCTCGTCGGAGTAAGAAGAGATGGAGCT 470
Query 455 AGGGGACTCGACGACATCGGTGATTCCAGACTCGTTCATGGGATACAGAGACGACATAAC 514
||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 AGGAGA-T--ACGACGTCGGTGATTCCAGACTCGTTCATGGGATACAGAGACGACATAAC 527
Query 515 AATGCAAATGTCAATGGTTTTGGATCAGATACGAGCTCCATTGATTGTTCCAGTCCTTAG 574
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 528 AATGCAAATGTCAATGGTTTTGGATCAGATACGAGCTCCATTGATTGTTCCAGCCCTTAG 587
Query 575 GCTCGGTGTTTACATATGTTTAACAATGTCGGTGATGCTCTTTGTCGAAAGGGTTTACAT 634
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 588 GCTCGGTGTTTACATCTGTTTGACAATGTCGGTGATGCTCTTTGTTGAAAGGGTTTACAT 647
Query 635 GGGAATAGTAATCTCTCTTGTGAAGCTGTTTGGTCGAAAACCAGATAAACGTTTCAAATA 694
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GGGAATTGTTATCTCTCTTGTGAAGCTGTTTGGTCGAAAACCAGATAAACGTTTCAAATA 707
Query 695 TGAACCAATGAAAGACGACATCGAGCTTGGAAACTCTGTTTATCCTATGGTTCTTGTTCA 754
||||||||| ||||| |||||||||||||||||||||| ||| || ||||||||| ||||
Sbjct 708 TGAACCAATCAAAGATGACATCGAGCTTGGAAACTCTGCTTACCCGATGGTTCTTATTCA 767
Query 755 AATCCCAATGTTCAACGAACGAGAGGTTTATCAACTATCTATTGGAGCTGCTTGTGGACT 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 AATCCCAATGTTCAACGAACGAGAGGTTTATCAACTATCTATTGGAGCTGCTTGTGGACT 827
Query 815 CTCTTGGCCTTCTGATCGAATCGTCATTCAAGTTCTTGATGATTCCACTGATCCAACGAT 874
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 828 CTCATGGCCTTCTGATCGAATCGTTATTCAAGTTCTTGATGATTCCACTGATCCAACGAT 887
Query 875 CAAAGATCTAGTGGAGATGGAGTGTAGCAGATGGGCGAGTAAAGGAGTAAACATCAAATA 934
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 888 CAAAGATCTAGTGGAGATGGAGTGTAGCAGGTGGGCGAGTAAAGGAGTAAACATCAAGTA 947
Query 935 TGAGATCAGAGATAACAGAAAAGGATACAAAGCTGGAGCTTTGAAAGAAGGAATGAAAAA 994
|||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||
Sbjct 948 TGAGATCAGAGACAACAGAAATGGATACAAAGCAGGAGCTTTGAAAGAAGGAATGAAGAA 1007
Query 995 GAGTTATGTCAAAAGCTGCGATTACGTTGCAATCTTCGACGCTGATTTTCAACCTGAACC 1054
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1008 GAGTTATGTCAAAAGCTGCGATTACGTTGCAATCTTCGACGCTGATTTTCAACCTGAAGC 1067
Query 1055 GGATTTTCTCTGGAGAACCGTACCGTATCTCCTCCATAACCCAAAGCTTGCTCTTGTTCA 1114
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1068 GGATTTTCTATGGAGAACCGTACCGTATCTACTCCATAACCCTAAGCTTGCTCTTGTTCA 1127
Query 1115 AGCTCGCTGGAAATTCGTAAATTCGGATGAATGTTTGATGACAAGGATGCAAGAAATGTC 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 AGCTCGCTGGAAATTCGTAAATTCGGATGAATGTTTGATGACAAGGATGCAAGAAATGTC 1187
Query 1175 TTTGGACTATCATTTTACGGTCGAACAAGAAGTTGGTTCTTCTACTTACGCTTTCTTCGG 1234
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1188 TTTGGATTATCATTTTACGGTGGAACAAGAAGTTGGTTCTTCTACTTACGCTTTCTTCGG 1247
Query 1235 ATTCAACGGAACTGCGGGAATATGGAGAATATCGGCACTAAACGAAGCTGGTGGTTGGAA 1294
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1248 ATTCAATGGAACTGCGGGAATATGGAGAATATCGGCATTAAACGAAGCTGGTGGTTGGAA 1307
Query 1295 AGATCGAACGACAGTGGAAGATATGGATTTGGCCGTGAGAGCTAGTCTCAAGGGTTGGAA 1354
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1308 AGATAGAACGACCGTGGAAGATATGGATTTGGCCGTGAGAGCTAGTCTCAAGGGTTGGAA 1367
Query 1355 ATTCTTGTACCTCGGTTCTTTGAAGGTTAAAAACGAGTTGCCAAGTACATTCAAGGCTTA 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 ATTCTTGTACCTCGGTTCTTTGAAGGTTAAAAACGAGTTGCCAAGTACATTCAAGGCTTA 1427
Query 1415 TAGGTATCAACAGCACAGGTGGTCATGTGGTCCAGCCAATCTTTTCAGAAAAATGGCATT 1474
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1428 TAGGTATCAACAGCACAGGTGGTCATGTGGTCCAGCTAATCTTTTCAGGAAAATGGCATT 1487
Query 1475 CGAAATCATGACCAATAAGAACGTGACTTTGTGGAAGAAAGTTCATGTGATATATAGCTT 1534
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488 CGAAATCATGACTAATAAGAACGTGACTTTGTGGAAGAAAGTTCATGTGATATATAGCTT 1547
Query 1535 CTTCGTGGTTAGAAAGCTAGTGGCACACATTGTTACCTTCATCTTCTACTGTGTGATCTT 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1548 CTTCGTGGTTAGAAAGCTAGTGGCACACATTGTTACCTTCATCTTCTACTGTGTGATCTT 1607
Query 1595 ACCCGCTACAGTTCTTGTACCGGAAGTTTCTGTTCCGAAATGGGGAGCGGTTTACATTCC 1654
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1608 ACCCGCTACAGTTCTTGTACCGGAAGTTACTGTTCCGAAATGGGGAGCGGTTTACATTCC 1667
Query 1655 TTCAGTCATTACTCTCCTCAACGCCGTTGGGACACCAAGGTCACTGCATCTTATGGTGTT 1714
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1668 TTCAGTCATTACTCTCCTCAACGCCGTTGGGACACCAAGGTCATTGCATCTTATGGTCTT 1727
Query 1715 TTGGATTCTGTTCGAGAATGTTATGTCTCTTCACAGAACAAAAGCTACCTTCATCGGTTT 1774
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1728 TTGGATTCTGTTCGAGAATGTGATGTCTCTTCACAGAACAAAAGCTACCTTTATCGGTTT 1787
Query 1775 ACTCGAAGGCGGAAGAGTTAATGAGTGGATTGTTACAGAGAAGCTGGGAGATGTTAAGGC 1834
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 ACTCGAAGGAGGAAGAGTTAATGAGTGGATTGTTACAGAGAAGCTGGGAGATGTTAAGGC 1847
Query 1835 TAAATCGGCCACTAAGACTCCAAAGAAGGTTCTTCGTTTTAGATTTGGAGATAGAATTCA 1894
|||||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1848 TAAATCAGCCACCAAGACTTCAAAGAAGGTTATTCGTTTTAGATTTGGAGATAGAATTCA 1907
Query 1895 TGTGTTGGAACTCGGTGTAGGAATGTATCTGTTATTTGTGGGATGTTATGACGCGTTTTT 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1908 TGTGTTGGAACTCGGTGTAGGAATGTATCTGTTATTTGTGGGATGTTATGACGCGTTTTT 1967
Query 1955 TGGGAAGAATCATTATTATCTATACCTTTTCGCGCAAGCAATCGCGTTCTTCATTGCGGG 2014
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1968 TGGGAAGAATCATTATTATCTATACCTTTTCGCACAAGCAATCGCGTTCTTCATTGCGGG 2027
Query 2015 ATTCGGGCAAATTGGGACAATTGTGCCTAACCATTGAAGGGAAAAAGGAGTTTTTGAGCG 2074
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2028 ATTCGGGCAAATTGGGACAATTGTGCCTAACCATTGAAGGGAAAAAGGAGTTTTCGAGCG 2087
Query 2075 ACGAAATGCTCGAGAATAAAAAGATGATTTCttttttttctttttGGATTCGCTAGCTAT 2134
||||| |||||||| |||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 2088 ACGAATTGCTCGAGGATAAGAAGATGATTTGTTTTCTTTCTTTTTGGATTCGCTAGCTAT 2147
Query 2135 TTAAATTCTTGTTGGTGTGAATAGAGAGAATTGATGATATGATTGTTACAGAAGTTGGTG 2194
||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 2148 TTAAATTCTTGTTGGTGTGAATAGAGAGAATTGATGATACCATTGTTACAGAAAT-GGTG 2206
Query 2195 TGTGTAGTGTGGAAGATAA-GGATACTTATAGTAAAGAAGAAATATACTTTGAAGGGATT 2253
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2207 TGTGTAGTGTGGAAGATAAAGGATACTTATAGTAAAGAAGAAATATACTTTGAAGGTTTT 2266
Query 2254 TTTCCGATTCCTT 2266
|||| ||||||||
Sbjct 2267 TTTCAGATTCCTT 2279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112449220800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5