BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487156
Length=1511
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03780.1 | Symbols: TRFL10 | TRF-like 10 | chr5:999102-10010... 1506 0.0
> AT5G03780.1 | Symbols: TRFL10 | TRF-like 10 | chr5:999102-1001029
REVERSE LENGTH=1509
Length=1509
Score = 1506 bits (815), Expect = 0.0
Identities = 1162/1318 (88%), Gaps = 70/1318 (5%)
Strand=Plus/Plus
Query 206 TGATGAAAGAGATGTGCCACATAAGAAGCGTCATTGTCTTGGGACCAGTGTGACTACTGA 265
||||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||
Sbjct 199 TGATGAAAGAGATGTGCCACACAAGAAGCGTCGTTGTCTTGGGACTAGTGAGACTACTGA 258
Query 266 TAGAGGAGGATCGGTAGAGCCGCTGCTGGACTTGGATGCTTGTATTGTATGTGAAGTTTC 325
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 TAGAGGAGGATCTGTAGAGCCGCTGCTGGACTTGGATGCTTGTATTGTATGTGAAGTTTC 318
Query 326 AGACGAGCGGGTATCCCGTTGTTGCGGGGTTGACTGTCTTCTTTCGTTTCACGGGGAGTG 385
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 319 AGACGAGCGGGTATCTCGTTGTTGCGGGGTTGACTGTCTTCTTTCGTTTCACGGCGAGTG 378
Query 386 TTTGTATGC-----T--G-AG---T--T-G--G--GTAGTAGTAGTAGCGAGGATGTTGC 427
||||||||| | | || | | | | ||||||||||||| ||||||||| |
Sbjct 379 TTTGTATGCTGATTTGGGTAGTACTAGTAGTAGTAGTAGTAGTAGTAGTGAGGATGTTTC 438
Query 428 AAATCCATTTTGTCCTTATTGCTGGCTCAAGATAGTTGCTCTGAAATCCAAAACATTGAG 487
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 439 GAATCCATTTTGTCCTTATTGCTGGCTCAAGATTGTTGCACTGAAATCCAAAACATTGAG 498
Query 488 AGAAAAGACCGTTGAGGCAGAGAAGGCGGTCTTCAAGTATCTAGATAAAGAGATGAAAAG 547
|||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 499 AGAAAAGACCGTTGAGGCGGAAAAGGCGGTCTGCAAGTATCTAGATAAAGAGATGAAAAG 558
Query 548 CAGGAATGGGGATACAACCTTGTCTGGTGATGCAATTGGAAACCAAGAGCAGAGTACAGA 607
|||| ||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 559 CAGGGATGAGGATATAACCTTATCTGGTGATGAAATTGGAAACCAAGAGCAGAGTACAGA 618
Query 608 CAAAGGTGA-TAATTCAAGAGGTGAGAACATGCTATTAATTGA-GG-AAATCGATC--AA 662
| | || | | | ||| || || | | | | | || || || || ||| ||
Sbjct 619 C-ATTGTAAGTGA-TCATGA-GTTA-CA-AGGAGA-GAA-GGATGGCTGTTC-ATCAAAA 670
Query 663 CCAGGA-GAGGATAAAGGGAAAGTTGGTACTGATAAAGTGATCGACGAAGTTGGAGCATC 721
||| || | |||| |||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 671 CCA-GATGCGGATCAAGGGAAAGTGGGTACTGGTAAAGTGATTGACGAAGTTGGAGCATC 729
Query 722 AGAGGACGAAGAGAGGGTAGCTACAGAAAACTTTCAAGACGCTGAAGATGATGACAAGGA 781
| | ||| | ||||||||||||||| ||||||||||| || || ||
Sbjct 730 -----A-G-AGA-A-GGTAGCTACAGAAAAATTTCAAGACGC---------TG--AA-GA 768
Query 782 TGATGAAACAGCTAAAGATCAAAGTACAAGAATCCTGAATACAGGTGCAGGGAAAAAGGG 841
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 769 TGATGAAACAGCTAAAGATCAAGGTACAAGAATCCTGAATACAGGTGCAGGGAAAAAGAG 828
Query 842 AAATGTTTCTTCGTTTTTGTCTATGCAAGAATCATTTTCAGCAAAAGAACACGACCATGT 901
| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 829 AGAGGTTTCTTCGTTTTTGTCTATGCAAGAATCGTTTTCAGCAAAAGAACAGGACCAGGT 888
Query 902 CCAACAGAATGAGGTGCGAAGAAGAAGAAGACGGATAGAACTGAACACTATTGATAGTGA 961
||| ||||||||| ||||||||| | ||| |||| |||| | ||| ||||||||
Sbjct 889 CCAGCAGAATGAGAAGCGAAGAAG--G-AGA-GGAT-----TGAAAATTATCGATAGTGA 939
Query 962 AATCTCATCAAAGGGATCAAGTAATGAACGAAATGGAGAAGATGTAACTGAGCAGATAAC 1021
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 940 CATCTCATCAAAGGGATCAAGTAACGAACGAAATGGAGAAGATGTAACTGAGCAGGTAAC 999
Query 1022 TTCATCGGCTCAAGTAACCTCCCCGTCAGGGAAAATGAAGAACCAGCAGGCAACAACCAA 1081
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1000 TTCATCGGTTCAAGTAACCTCCCCGTCAGGGAGAATGAGGAACCAGCAGGCAACAACCAA 1059
Query 1082 AGCTGCGGCTAAGTCAAAGACAGTGAGGGACATTTCTTTCTTTATGAAGGATCAGAGAAG 1141
|| || |||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 1060 AGTTGTGGCTAAGTCAAAGACAGTGAGGGACATTTCTTTCTTTAAGATGGATCAAAGAAG 1119
Query 1142 GAGGCTACTTTGGACGTACAAAGAAGAAGAGATGCTAAAGGTGGGAGTGGAGAAGTTTGC 1201
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1120 GAGGCTACTTTGGACGTACGAAGAAGAAGAGATGCTAAAGGTGGGAGTGGAGAAATTTGC 1179
Query 1202 AGCAGATGCAAAGAAGAACATGCCATGGAGGAAAATTCTGGAAATGGGAGAGAAGGTGTT 1261
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 AGCAGAAGCAAACAAGAACATGCCATGGAGGAAAATTCTGGAAATGGGAGAGAAGGTGTT 1239
Query 1262 CCACGAAACACGTACACCAGCTGATCTCAAGGACAAATGGAGAAACATGCTCGGCGCAAG 1321
||||||||||||||| |||||||||||||||||||||||||| | |||| || |||
Sbjct 1240 CCACGAAACACGTACTCCAGCTGATCTCAAGGACAAATGGAGGAGCATGGTC-----AAG 1294
Query 1322 AGTAGGACCAAAAACGAACAAGGCAGCACACTAAATCCTTACTGCTATGTAATCAATAGT 1381
| || || |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1295 ATTATGAACAAAAACGAACAAGGCAGCACACTAACCCCT-ACTGCTATGTAATCAATAGT 1353
Query 1382 TAGTGTGACTCATTTTGGAGATGAAGCCATACTTGGTGAAGTAATGTGGGAGTTGAGCTG 1441
|||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 1354 TAGTGTGACTTATTTTGGAGATGAAGCCAGACTTGGTGAACTAATGTGGGAGTTGATCTG 1413
Query 1442 TATAATAGACAAAAATTCCTCCTTTACAAGAACTGGCTTCTACTTTTTTGTGCATCTT 1499
| |||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 1414 TGTAATAGACAAAAGTTCCTCCTTTACAAGAACTGACTTCTACTTTTT-GTGTATCTT 1470
Score = 139 bits (75), Expect = 7e-32
Identities = 96/105 (91%), Gaps = 5/105 (5%)
Strand=Plus/Plus
Query 30 ATTGTTGAACTCGAGACTGATGATTGAG-AGAAACTGTAGAAGATGAAGATGAGAACCAA 88
||| || ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 66 ATT-TTAAAC-CGAGACTGATGATTGAGAAGAAACTGTCGAAGATGAAGATGAGAACCAA 123
Query 89 ATCGATTCTGGTTAGGTCTTCGCGCAAATCTCTCGAT-C-CTTCT 131
|||||||| ||||||||||||||||||||| |||||| | |||||
Sbjct 124 ATCGATTCCGGTTAGGTCTTCGCGCAAATCCCTCGATTCGCTTCT 168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74547809325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5