BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487158
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03795.1 | Symbols: | Exostosin family protein | chr5:10073... 2399 0.0
> AT5G03795.1 | Symbols: | Exostosin family protein | chr5:1007390-1010473
REVERSE LENGTH=1821
Length=1821
Score = 2399 bits (1299), Expect = 0.0
Identities = 1508/1610 (94%), Gaps = 9/1610 (1%)
Strand=Plus/Plus
Query 26 TTTCTTCTCAAAGAAAGAGATATTAAGCGTGAGAGAGA-GATGGGAGATGAAGATGTTGA 84
|||||||||| ||||||||| ||||| | |||||||| ||||||||||||||||||||
Sbjct 62 TTTCTTCTCAGAGAAAGAGA-ATTAATAGAGAGAGAGATCATGGGAGATGAAGATGTTGA 120
Query 85 TGGGAAGTGTAGAAACATGTCTGCATGTTCCTCAACGACTTCGTATTCAACTAAACTCTT 144
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 TGGGAAGTGTAAAAACATGTCTGCATGTTCCTCAACGACGTCGTATTCAACTAAACTCTT 180
Query 145 TCTCTTCATGGTTCCTCTTGTTCTCATTTCTGCTTTCGTCTTTGTAAATATTGGTCCTAA 204
||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 181 TCTATTCATGGTTCCTCTTGTTGTCATTTCTGGTTTCGTCTTTGTAAATATTGGTCCTAA 240
Query 205 A-ACTCCAACTTCTTTCTTAACCTCTTTGTCCACTTCTTC-TCATCATCTCCCTCCTTCT 262
| | | |||||||||| ||||||||| |||||||| || | || |||||| |||| ||
Sbjct 241 AGA-TTCAACTTCTTTATTAACCTCTCTGTCCACTACTACTTC-TCATCT---TCCTCCT 295
Query 263 CCGTCTCTGCCTCCGGCTCCGGCGCCGGCGCTATCTCCTCTGCCACCGGAGATGCTTCCC 322
|||| |||| || |||||||||| ||||||| ||||||||||| ||||||||| ||||||
Sbjct 296 CCGTTTCTGTCTACGGCTCCGGCACCGGCGCCATCTCCTCTGCTACCGGAGATACTTCCC 355
Query 323 TCGTTGTCAGCATCATCTTTATCTACTAAAGTGGAATCTATTCAGGATGATTATAATCGC 382
|||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 356 TCGTTGCCAGCATCATCTTTATCGACTAAAGTGGAATCTATTCAGGGTGATTATAATCGC 415
Query 383 ACGATTCAAATGAATCTGATCAACGTTACTACAACGAGTAGTAACGTCACTTCTACGGCA 442
|| |||||| ||||| |||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 416 ACAATTCAACTGAATATGATCAACGTTACTGCAACGAGTAATAACGTCTCTTCTACGGCA 475
Query 443 TCATTGGAACCAAAGAAGAGAAGAGTTCTTAGCAATTTAGAGAAGATCGAATTCGAGCTA 502
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 476 TCATTGGAACCAAAGAAAAGAAGAGTTCTTAGCAATTTAGAGAAGATAGAATTCAAGCTA 535
Query 503 CAAAAAGCTCGAGCCTCCATTAAAGCCGCTTCGATGGATGATCCCGTGGACGACCCGGAC 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CAAAAAGCTCGAGCCTCCATTAAAGCCGCTTCGATGGATGATCCCGTGGACGACCCGGAC 595
Query 563 TATGTTCCTCTTGGTCCTATGTATTGGAACGCGAAGGTCTTTCATCGGAGTTACTTGGAG 622
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 TATGTTCCTCTTGGTCCTATGTATTGGAACGCTAAGGTCTTTCATCGGAGTTACTTGGAG 655
Query 623 ATGGAGAAACAATTCAAGATATATGTGTACAAAGAAGGCGAGCCACCGTTGTTCCATGAC 682
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 656 ATGGAGAAACAATTCAAGATATATGTATACAAAGAAGGCGAGCCACCGTTGTTCCATGAC 715
Query 683 GGTCCATGCAAAAGCATCTACTCTATGGAAGGAAGTTTCATCTATGAGATGGAAACCGAT 742
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 716 GGTCCATGCAAAAGCATCTACTCTATGGAAGGAAGTTTCATCTATGAGATAGAAACCGAT 775
Query 743 ACGCGTTTCCGGACCAATAATCCCGACAAAGCACATGCTTTTTATTTACCCTTTAGTGTC 802
|| ||||| |||||||||||||||||||| || |||| ||||||| |||| |||||||||
Sbjct 776 ACACGTTTTCGGACCAATAATCCCGACAAGGCTCATGTTTTTTATCTACCATTTAGTGTC 835
Query 803 GTCAAGATGGTAAGATACGTGTATGAACGCAACTCCCGCGATTTCAGCCCCATCCGAAAT 862
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 836 GTCAAGATGGTAAGATACGTGTATGAACGAAATTCCCGCGATTTCAGCCCCATCCGAAAT 895
Query 863 ACAGTCAGGGATTACATCAATCTTGTGGGTGATAAATACCCATATTGGAACCGCAGCATC 922
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ACAGTCAAGGATTACATCAATCTTGTGGGTGATAAATACCCATATTGGAACCGCAGCATC 955
Query 923 GGAGCCGATCACTTCATACTTTCTTGCCACGACTGGGGTCCTGAGGCAAGCTTTTCTCAT 982
||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 956 GGAGCCGATCATTTCATACTTTCTTGTCACGATTGGGGTCCTGAGGCAAGCTTCTCTCAT 1015
Query 983 CCACATCTAGGACATAATTCGATTCGAGCTTTATGTAATGCCAACACGTCAGAGAAATTC 1042
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||
Sbjct 1016 CCACATCTAGGACATAATTCGATTAGAGCTTTGTGCAATGCCAACACGTCAGAGAGATTC 1075
Query 1043 AAACCAAGAAAAGATGTGTCAATACCGGAGATTAATCTACGGACAGGATCATTAACTGGA 1102
|||||||||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||
Sbjct 1076 AAACCAAGAAAAGATGTGTCGATACCGGAGATCAATCTAAGGACGGGATCCTTAACTGGA 1135
Query 1103 TTGGTCGGTGGGCCATCACCTTCCAGCCGTCCAATCCTTGCCTTCTTTGCAGGGGGTGTA 1162
||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1136 TTGGTCGGTGGACCGTCACCTTCCAGCCGTCCCATCCTCGCCTTCTTTGCAGGGGGTGTA 1195
Query 1163 CACGGACCGGTAAGGCCAGTCCTGCTCGAACATTGGGAGAACAAAGATAATGACATTAGA 1222
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 1196 CACGGACCGGTAAGGCCAGTCTTGCTCCAGCATTGGGAGAACAAAGATAATGACATTAGA 1255
Query 1223 GTCCACAAGTATCTCCCTAGAGGAACGTCTTATTCTGACATGATGCGGAACAGCAAGTTC 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GTCCACAAGTATCTCCCTAGAGGAACGTCTTATTCTGACATGATGCGGAACAGCAAGTTC 1315
Query 1283 TGCATTTGTCCGAGTGGTTATGAGGTTGCGAGCCCGAGGATCGTGGAAGCACTTTACTCG 1342
||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1316 TGCATTTGTCCTAGCGGTTATGAGGTTGCGAGCCCGAGGATCGTGGAGGCACTCTACTCG 1375
Query 1343 GGTTGTGTCCCGGTTCTGATAAACTCAGGCTACGTTCCTCCGTTCAGCGATATATTGAAC 1402
||||| ||||||||| ||||||||||||| || |||||||||||||||||| || |||||
Sbjct 1376 GGTTGCGTCCCGGTTTTGATAAACTCAGGATATGTTCCTCCGTTCAGCGATGTACTGAAC 1435
Query 1403 TGGAGATCGTTCTCAGTCATCGTTTCAGTGGAAGACATACCGAATTTGAAGACGATATTG 1462
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1436 TGGAGATCGTTCTCGGTGATCGTTTCAGTGGAAGACATACCGAATTTGAAAACGATATTG 1495
Query 1463 ACAGCGATATCGCCGAGACAGTACCTAAGGATGTACAGAAGAGTTTTGAAGGTAAGGCGA 1522
||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 1496 ACATCTATATCGCCGAGACAGTACTTAAGGATGTACAGAAGAGTGTTGAAGGTAAGGAGA 1555
Query 1523 CATTTTGAAGTGAATTCTCCGGCCAAGAGGTTTGATGTGTTTCATATGATTCTTCATTCG 1582
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1556 CATTTTGAGGTGAATTCTCCGGCTAAGAGGTTTGATGTGTTTCATATGATTCTTCATTCG 1615
Query 1583 ATTTGGGTAAGGAGATTGAATGTGAGGATCCGTGAGGTCTAAGTTTGGTC 1632
|||||||| |||||||||||||||| ||| ||||| |||||||||| |||
Sbjct 1616 ATTTGGGTGAGGAGATTGAATGTGAAGATTCGTGAAGTCTAAGTTTTGTC 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82680297615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5