BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487159
Length=2802
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopept... 4300 0.0
> AT5G03800.1 | Symbols: EMB175, emb1899, EMB166 | Pentatricopeptide
repeat (PPR) superfamily protein | chr5:1010780-1013586
REVERSE LENGTH=2807
Length=2807
Score = 4300 bits (2328), Expect = 0.0
Identities = 2652/2809 (94%), Gaps = 19/2809 (1%)
Strand=Plus/Plus
Query 1 TCATGTCCACCGTTAATCATCACTGTATCCTCAACTTTCCTCATATCCCACCTTCAATTC 60
||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1 TCATGTCCACCGTTAATCATCACTGCCTCCTCAATTTTCCTCATATCCCACCTTCAATTC 60
Query 61 CTCCGAATCATCGTCCCAAACTTCATTCTTCTCTTTCCCTCTATCGAAAACCCGAACGCC 120
|||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||
Sbjct 61 CTCCGAATCATCGTCCCAAACTTCTTTCTTCTCTCTCCCTCTATCGAAAACCAGAACGCC 120
Query 121 TCTTTAC-CATCTCTGCGTCTCTGTCGCTTTCACCAGCAACCATCCATGAGTGTTCTTCT 179
||||| | | |||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 121 TCTTTGCTC-TCTCTGCGTCTCTGTCTCTTTCACCAGCAACAATCCATGAATGTTCTTCT 179
Query 180 TCCTCATCATCTTCTTCTCCATCGTTCGAGAAGGAAGAAAGGGAAGAGATTGAATCTATT 239
|||||||| ||||||||| |||||||||| || ||||||| |||||| ||||||||| ||
Sbjct 180 TCCTCATCTTCTTCTTCTTCATCGTTCGATAAAGAAGAAACGGAAGACATTGAATCTGTT 239
Query 240 GTTGATGGGTTTTTCTATCTGCTTCGATTGTCTGCTCAATACCAGGACGTCGAGGTAACA 299
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 ATTGATGGGTTTTTCTATCTGCTTCGATTGTCTGCTCAATACCACGACGTCGAGGTAACA 299
Query 300 AAAGCTGTACACGCTTCGTTCCTTAAGCTCAGAGAAGAAAAAACCCGTCTTGGAAATGCC 359
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 300 AAAGCTGTGCACGCTTCGTTTCTTAAGCTCAGAGAAGAAAAAACCCGTCTTGGAAATGCC 359
Query 360 CTAATCTCTACATATCTCAAACTTGGTTTCCCTCGTGAAGCTTTTCTCGTCTTCGTGTCT 419
|| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 CTTATCTCTACTTATCTCAAACTTGGTTTCCCTCGTGAAGCTATTCTCGTCTTCGTGTCT 419
Query 420 CTTTCTTCACCAACGGTGGTTTCTTACACAGCTCTTATCTCGGGTTTCTCAAGGTTAAAC 479
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTGTCTTCGCCAACGGTGGTTTCTTACACAGCTCTTATCTCGGGTTTCTCAAGGTTAAAC 479
Query 480 CTTGAAATTGAGGCTCTTAAGGTTTTCTTCAGGATGAGAAAAGCAGGTATTGTCCAGCCG 539
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 480 CTTGAAATTGAGGCTCTTAAGGTTTTCTTCAGGATGAGAAAAGCAGGTCTTGTTCAGCCG 539
Query 540 AATGAGTATACTTTCGTAGCGATTTTGACTGCTTGCGTGAGAGTTTCGCGATTCTCGCTT 599
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 540 AATGAGTATACTTTTGTAGCGATTTTGACTGCTTGCGTGAGAGTTTCCCGATTCTCGCTT 599
Query 600 GGGATTCAGATTCATGGATTGATAGTTAAATCCGGGTTTTTGAATTCTGTGTTTGTTGGT 659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 600 GGGATTCAGATTCATGGATTGATAGTTAAATCAGGGTTTTTGAATTCTGTGTTTGTTAGT 659
Query 660 AATTCGTTAATGAGTTTGTATTCA-AAGGATTCTGGGTCGTCGAGTGATGATGTGCTTAA 718
|||||| | ||||||||||| | | |||||||||||||| ||| ||||||||||||||||
Sbjct 660 AATTCGCTGATGAGTTTGTA-TGATAAGGATTCTGGGTCTTCGTGTGATGATGTGCTTAA 718
Query 719 GTTGTTCGATGAAATTCCTCACAGAGATGTGGCTTCTTGGAACACTGTGATTTCGAGTTT 778
||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||
Sbjct 719 GTTGTTCGATGAAATTCCTCAGAGAGATGTGGCGTCTTGGAACACTGTGGTTTCGAGTTT 778
Query 779 AGTGAAAGAGGGAAAGTCTCATAAAGCTTTTAATTTGTTTTATGAGATGAACAGAGTCGA 838
|||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 779 AGTGAAAGAGGGCAAGTCTCATAAAGCTTTCGATTTGTTTTATGAGATGAATAGAGTCGA 838
Query 839 AGGACTTGGAGTTGATTGTTTTACGCTTTCAACGCTTTTGAGCTCTTGCACTGATTCGAG 898
|||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 839 AGGATTTGGAGTTGATAGTTTTACGCTTTCAACGCTTTTGAGCTCTTGTACTGATTCTAG 898
Query 899 TGACTTGTTGAGAGGCAGAGAACTCCATGGTCGTGCAATTAGAATAGGGTTGATGCAGGA 958
|| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 899 TGTCTTATTGAGAGGTAGAGAACTCCATGGTCGTGCAATTAGGATAGGGTTGATGCAGGA 958
Query 959 ATTGAGTGTCAATAACGCTTTGATTGGGTTTTATTCTAAATATGGGGATATGAAAAAGGT 1018
|||||||| || |||||| ||||||||||||||||||||| | ||||||||||||||||
Sbjct 959 GTTGAGTGTGAACAACGCTCTGATTGGGTTTTATTCTAAATTTTGGGATATGAAAAAGGT 1018
Query 1019 AGAGAGTTTGTACGAGATGATGATGGTGCAAGATGCCGTTACTTTCACGGAGATGATCAC 1078
||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1019 AGAGAGTTTATACGAGATGATGATGGCGCAAGATGCTGTTACTTTCACGGAGATGATCAC 1078
Query 1079 TGCTTACATGGCATTTGGAATGGTGGATTCTGCTGTTGAGATATTCGAGAATATAACTGA 1138
||||||||| ||||||||||||||||||| |||||||||||||||| |||| |||||||
Sbjct 1079 AGCTTACATGTCATTTGGAATGGTGGATTCCGCTGTTGAGATATTCGCGAATGTAACTGA 1138
Query 1139 GAAAAACACTATTACCTATAACGCGCTCATGGCTGGGTTCTGTAGAAACGGCCATGGCTT 1198
|||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1139 AAAAAACACTATTACGTATAATGCGCTCATGGCTGGGTTCTGTAGAAATGGCCATGGCTT 1198
Query 1199 GAAGGCACTGAAATTATTCACTGAAATGCTGCATAGAGGCGTTGAGTTGACGGATTTCAG 1258
||||||||| |||||||||||||| |||||||| ||||| ||||||||||||||||| ||
Sbjct 1199 GAAGGCACTAAAATTATTCACTGATATGCTGCAGAGAGGTGTTGAGTTGACGGATTTTAG 1258
Query 1259 TTTAACAAGCGCTGTGGACGCTTGTGGTTTAGCTTCAGAGAAGAAAGTAAGCGAACAGAT 1318
||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1259 TTTAACAAGCGCTGTTGATGCTTGTGGTTTAGTTTCAGAGAAGAAAGTAAGCGAACAGAT 1318
Query 1319 TCACGGGTTTTGTATTAAGTTTGG-A-TGTCTTTTAAACCCTTGTATCCAGACTGCATTG 1376
|||||||||||||||||||||||| | || | ||| ||||||||||||||||||||||||
Sbjct 1319 TCACGGGTTTTGTATTAAGTTTGGAACTG-C-TTTCAACCCTTGTATCCAGACTGCATTG 1376
Query 1377 CTTGATATGTGCACAAGGTGTGGAAGGATGGCAGATGCTGAGGAGATGTTTGACCAATGG 1436
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTTGATATGTGCACAAGGTGTGAAAGGATGGCAGATGCTGAGGAGATGTTTGACCAATGG 1436
Query 1437 CCTTCTAATCTCGATAGCTCGAAGGCAACGACGTCAATACTCGGTGGTTACGCTCGGAAT 1496
||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 1437 CCTTCTAATCTCGATAGCTCGAAAGCAACGACGTCTATAATCGGTGGTTACGCTCGGAAT 1496
Query 1497 GGCTTACCTGATAAGGCTTTATCGCTATTCCATCGCACTCTCTGTGAAGAGGAGTTGTTT 1556
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 1497 GGCTTACCTGATAAGGCTGTATCGCTATTCCATCGCACTCTCTGTGAACAGAAGTTGTTT 1556
Query 1557 TTAGATGAAGTTTCGTTGACTTTGATTCTTGCGGTCTGCGGGACATTAGGGTTTCGGGAA 1616
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1557 TTAGATGAAGTTTCGTTGACTTTGATTCTTGCGGTCTGCGGGACATTAGGTTTTCGGGAA 1616
Query 1617 ATGGGTTATCAGATCCATTGCTATGCTCTTAAAGCTGGCTACTTTTCTGATGTATGCTTG 1676
|||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||
Sbjct 1617 ATGGGTTATCAGATCCATTGCTATGCTCTTAAAGCTGGGTACTTTTCTGATATAAGCTTG 1676
Query 1677 GGGAATTCTTTGATTAGCATGTACTCGAAATGTTGTGACTCAGATGATGCCATAAAGGTT 1736
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1677 GGAAATTCTTTGATTAGCATGTACGCGAAATGTTGTGACTCAGATGATGCCATAAAGATT 1736
Query 1737 TTCAAGACTATGCAAGAACATGATGTTGTTTCTTGGAACAGCTTGATTTCTTGCTACATC 1796
||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1737 TTCAACACTATGCGAGAACATGATGTTATTTCTTGGAACAGCTTGATTTCTTGCTACATC 1796
Query 1797 CTTCAAAGAAATGGTGACGAGGCACTGGCTCTATGGTCGAGGATGAATGAGGAAGAGATC 1856
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1797 CTTCAAAGAAATGGTGATGAGGCACTGGCTCTATGGTCGAGGATGAATGAGAAAGAGATC 1856
Query 1857 AAGCCTGACATGATCACGCTCACTCTTGTTATTTCTGCATTTCGGTATACAGAGTCAAAT 1916
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1857 AAGCCTGACATAATCACCCTCACTCTTGTTATTTCTGCATTTCGGTATACAGAGTCAAAT 1916
Query 1917 AAGCTTAGTAGCTGCCGTGATCTGTTTCTCTCCATGAAGACTATCTATGACATTGAACCA 1976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 AAGCTTAGTAGCTGCCGTGATCTGTTTCTCTCCATGAAGACTATCTATGACATTGAACCA 1976
Query 1977 ACGACTGAACATTACACTGCATTCGTCCGTGTTCTGGGTCATTGGGGTCTTCTTGAAGAA 2036
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1977 ACGACTGAACATTACACTGCATTCGTCCGTGTTCTTGGTCATTGGGGTCTTCTTGAAGAA 2036
Query 2037 GCGGAAGACACAATAAACTCGATGCCGTTTCAGCCCGAGGTCTCTGTTTTGAGAGCTCTG 2096
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 2037 GCGGAAGACACAATAAACTCAATGCCGGTTCAGCCCGAGGTCTCTGTTTTGAGAGCTCTG 2096
Query 2097 CTTGATAGCTGCAGAGTCCATTCAAACACAAGCGTTGCAAAACGAGTAGCAAAGCTTGTA 2156
||||||||||||||| | |||||||||||||||||||| |||||||||||||||||| ||
Sbjct 2097 CTTGATAGCTGCAGAATACATTCAAACACAAGCGTTGCGAAACGAGTAGCAAAGCTTATA 2156
Query 2157 CTATCGACAAAACCAGAAAACCCGTCTGATTACATCCTCAAATCCAACATCTACTCAGCT 2216
||||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2157 CTATCTACAAAGCCAGAAACCCCGTCTGAGTACATCCTCAAATCCAACATCTACTCAGCT 2216
Query 2217 TCCGGACTCTGGCATCGCTCTGAAATGATAAGAGAGGAAATGCGGGAAAGAGGTTACCGG 2276
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 TCCGGATTCTGGCATCGCTCTGAAATGATAAGAGAGGAAATGCGGGAAAGAGGTTACCGG 2276
Query 2277 AAACATCCTTCTAAAAGCTGGATAATCCATGAGAACAAAGTACATTCCTTTCACGCACGT 2336
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 2277 AAACATCCTGCTAAAAGCTGGATAATCCATGAGAACAAAATACATTCCTTTCACGCGCGT 2336
Query 2337 GACACATCCCACCCGCAAGAGAAAGACATATACAGCGGATTGGAGATACTGATAATGGAA 2396
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2337 GACACATCCCACCCGCAAGAGAAAGACATATACAGGGGATTGGAGATACTGATAATGGAA 2396
Query 2397 TGTCTGAAAGCTGGATACGAGCCAAACACAGAGTTTGTTCTTCAGGAGGTTGATGAGTTT 2456
|||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 2397 TGTCTGAAAGTTGGATACGAACCAAACACAGAGTATGTTCTTCAGGAGGTTGATGAGTTT 2456
Query 2457 ATGAAGAAGAGTTTCTTGTTTCACCACAGCGCGAAACTCGCAGTGACTTATGGCATTCTC 2516
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2457 ATGAAGAAGAGTTTCTTGTTTCACCACAGCGCGAAACTCGCAGTGACTTATGGAATTCTC 2516
Query 2517 ACAAGCAATACTCGGGGAAAGCCGGTTCGGGTTGTGAAGAACGTGATGCTCTGTGGTGAT 2576
| |||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2517 TCGAGCAATACTCGGGGCAAGCCGGTTCGGGTTATGAAGAACGTAATGCTCTGTGGTGAT 2576
Query 2577 TGTCATGAGTTTTTCAAGTATGTTTCAGTTGTGGTAAAGAGAGAGATAGTTTTGAGAGAT 2636
|| || ||||| ||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 2577 TGCCACGAGTTCTTCAAGTATATTTCAGTTGTGGTAAAAAGAGAGATAGTTTTGAGAGAT 2636
Query 2637 TCGTCAGGGTTTCATCATTTTGTAAATGGCAAGTGTTCTTGTAGAGATCTCTGGTGAATC 2696
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 2637 TCCTCAGGGTTTCATCATTTTGTGAATGGCAAGTGTTCTTGTAGAGATCTGTGGTGAATC 2696
Query 2697 AACCAAGACC-TTAGTTTTTGTAATGTTTAATTTATATAA-T-CATAAGTTGTTAATACG 2753
||||||||| |||||||||||||||||| ||| ||||| | | |||||||||||||||
Sbjct 2697 GACCAAGACCCTTAGTTTTTGTAATGTTTTCTTT-TATAAATTCGTAAGTTGTTAATACG 2755
Query 2754 AGAGTTTTGGGAGCTCTGCTCGATAGCTACAGAGTCCATTCAAAGTTTC 2802
|||||||||| | | || |||||||||| |||||||||||||||||
Sbjct 2756 AGAGTTTTGG----T-T-CT-GATAGCTACATAGTCCATTCAAAGTTTC 2797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139213266825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5