BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487160
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03820.1 | Symbols: | GDSL-like Lipase/Acylhydrolase family... 1517 0.0
AT5G03810.1 | Symbols: | GDSL-like Lipase/Acylhydrolase family... 1426 0.0
> AT5G03820.1 | Symbols: | GDSL-like Lipase/Acylhydrolase family
protein | chr5:1015803-1017263 REVERSE LENGTH=1077
Length=1077
Score = 1517 bits (821), Expect = 0.0
Identities = 950/1013 (94%), Gaps = 5/1013 (0%)
Strand=Plus/Plus
Query 24 CGCCTGCGTTGGGACCGGTCAGCCACTTGTACCGGCTCTAATCATAATGGGAGATTCAGT 83
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 66 CGCCGGCGTTGGGACCGGTGAGCCACTTGTACCGGCTCTAATCATAATGGGAGATTCAGT 125
Query 84 TGTCGATGCTGGTAACAACAACCACCTCAATACCCTCGTTAAAGCCAATTTTCCTCCCTA 143
||||||||| || |||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 126 TGTCGATGCCGGCAACAACAACCGCCTCAATACCCTCATCAAAGCCAATTTTCCTCCCTA 185
Query 144 TGGCCGCGACTTCTTCGCCCACAATGCCACTGGCCGTTTCTCTAACGGAAAACTTGCCAC 203
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 TGGACGTGACTTCTTAGCCCACAATGCCACTGGCCGTTTCTCTAACGGAAAACTTGCCAC 245
Query 204 TGACTTTACCGCTGAGAGTTTAGGGTTCACTTCTTACCCGGTGGCGTACCTTAGCCAAGA 263
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 246 AGACTTTACCGCTGAGAGTTTAGGGTTCACTTCTTACCCGGTGCCGTATCTTAGCCAAGA 305
Query 264 AGCTAATGGGACAAATCTGTTAACCGGAGCCAATTTCGCCTCTGGTGCTTCCGGTTTTGA 323
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 306 AGCTAATGGGACAAATCTGTTAACCGGAGCCAATTTCGCCTCTGGTGCTTCCGGTTATGA 365
Query 324 CGACGGAACTGCCCTATTTTACAATGCAATAACATTGAACCAACAGCTGGAAAACTACAA 383
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 366 CGACGGAACTGCCATATTTTACAATGCAATAACATTGAACCAACAGCTGAAAAACTACAA 425
Query 384 AGAGTACCAAAACAAAGTGACGAACATTGTGGGAAGAGAAAGAGCAAATGAGATATTCTC 443
||||||||||||||| ||||| |||||||| ||||| |||||||||||| | ||||||||
Sbjct 426 AGAGTACCAAAACAAGGTGACAAACATTGTTGGAAGCGAAAGAGCAAATAAAATATTCTC 485
Query 444 AGGCGCGATTCATCTTCTAAGCACGGGATCAAGCGATTTTCTTCAAAGCTATTACATCAA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 AGGCGCGATTCATCTTCTAAGCACGGGATCAAGCGATTTTCTTCAAAGCTATTACATCAA 545
Query 504 TCCGATCCTTAACCTGATTTTCACGCCTGATCAATACTCGGATCGTCTCTTGAGATCCTA 563
||||||||||||| ||| |||||||||||||||||||| ||||||||| ||| | ||||
Sbjct 546 CCCGATCCTTAACCGGATATTCACGCCTGATCAATACTCAGATCGTCTCATGAAACCCTA 605
Query 564 TTCCACCTTTGTGCAAAATTTGTATGGTTTAGGTGCTAGAAAGATTGGAGTGACGACGTT 623
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 606 TTCCACCTTTGTCCAAAATTTGTATGATTTAGGAGCTAGAAAGATTGGAGTGACGACGTT 665
Query 624 ACCGCCGTTGGGTTGTTTACCTGCTGCAATAACGACGTTTGGTGAAGCTGGGAAC---AA 680
|||||| |||||||||||||| || || ||||| |||||||||| | |||||| ||
Sbjct 666 ACCGCCATTGGGTTGTTTACCGGCGGCGATAACCTTGTTTGGTGAAACCGGGAACAATAA 725
Query 681 TACGTGCGTCGAAAGACTAAACCGA-GATGCGGTTTCCTTCAATACCAAACTCAACAACA 739
||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 726 TACCTGCGTGGAAAGACTAAACC-AGGATGCGGTTTCCTTCAATACCAAACTCAACAACA 784
Query 740 CGTCTATGAACTTAACCAACAATCTTCCCGGTCTGAAATTGGTCGTCTTTGACATCTATA 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 785 CGTCTATGAACTTAACCAACAATCTTCCCGGTCTGAAATTGGTCGTCTTTGACATCTATA 844
Query 800 ATCCTCTGTTGAGCATGGTCATGAACCCTGTCGAGAATGGGTTTTTGGAATCAAGAAGGG 859
||||||| || | ||||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 845 ATCCTCTCTTAAACATGGCCATGAACCCTGTCGAGAATGGGTTTTTTGAATCAAGAAGAG 904
Query 860 CTTGTTGTGGAACCGGGACAGTGGAAACTTCGTTCCTATGTAATGCAAGATCGGTGGGTA 919
| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 905 CATGTTGTGGAACCGGAACAGTGGAAACGTCGTTTCTATGTAATGCAAGATCGGTGGGTA 964
Query 920 CATGTTCGAATGCTACCAATTACGTGTTTTGGGATGGTTTTCATCCATCCGAGGCAGCCA 979
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 965 CATGTTCGAATGCTACGAATTACGTGTTTTGGGATGGTTTTCATCCATCCGAAGCAGCCA 1024
Query 980 ATCGTGTCATCGCAAATAATCTTCTTGTCCAAGGAATCCCCCTTATCTCTTAA 1032
||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1025 ATCGTGTTATCGCAAATAATCTTCTTGTCCAAGGAATACCCCTCATCTCTTAA 1077
> AT5G03810.1 | Symbols: | GDSL-like Lipase/Acylhydrolase family
protein | chr5:1013939-1015345 REVERSE LENGTH=1062
Length=1062
Score = 1426 bits (772), Expect = 0.0
Identities = 936/1015 (92%), Gaps = 12/1015 (1%)
Strand=Plus/Plus
Query 24 CGCCTGCGTTGGGACCGGTCAGCCACTTGTACCGGCTCTAATCATAATGGGAGATTCAGT 83
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 54 CGCCGGCGTTGGGACCGGTGAGACACTTGTACCGGCTCTAATCATAATGGGAGATTCAGT 113
Query 84 TGTCGATGCTGGTAACAACAACCACC-TCAATACCCTCGTTAAAGCCAATTTTCCTCCCT 142
||| ||||| |||||||||||||||| | | ||||||||| |||||||||||||||||||
Sbjct 114 TGTTGATGCCGGTAACAACAACCACCGT-ATTACCCTCGTCAAAGCCAATTTTCCTCCCT 172
Query 143 ATGGCCGCGACTTCTTCGCCCACAATGCCACTGGCCGTTTCTCTAACGGAAAACTTGCCA 202
| || || |||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 173 ACGGACGTGACTTCGTCGCCCACAGTGCAACTGGCCGTTTCTCTAACGGAAAACTTGCCA 232
Query 203 CTGACTTTACCGCTGAGAGTTTAGGGTTCACTTCTTACCCGGTGGCGTACCTTAGCCAAG 262
| |||||||||||||||| ||||||||| || |||||||||||||| |||||||||||||
Sbjct 233 CAGACTTTACCGCTGAGAATTTAGGGTTTACATCTTACCCGGTGGCTTACCTTAGCCAAG 292
Query 263 AAGCTAATGGGACAAATCTGTTAACCGGAGCCAATTTCGCCTCTGGTGCTTCCGGTTTTG 322
|||| |||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||
Sbjct 293 AAGCAAATGAGACAAATTTGTTAACCGGAGCCAATTTCGCATCTGGAGCTTCCGGTTTTG 352
Query 323 ACGACGGAACTGCCCTATTTTACAATGCAATAACATTGAACCAACAGCTGGAAAACTACA 382
|||||| ||||||| |||||||||||||||||||||||| ||| |||||| |||||||||
Sbjct 353 ACGACGCAACTGCCATATTTTACAATGCAATAACATTGAGCCAGCAGCTGAAAAACTACA 412
Query 383 AAGAGTACCAAAACAAAGTGACGAACATTGTGGGAAGAGAAAGAGCAAATGAGATATTCT 442
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 413 AAGAGTACCAAAACAAGGTGACGAACATTGTGGGAAAAGAAAGAGCAAATGAGATATTCT 472
Query 443 CAGGCGCGATTCATCTTCTAAGCACGGGATCAAGCGATTTTCTTCAAAGCTATTACATCA 502
|||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 473 CAGGTGCAATTCATCTTCTAAGCACAGGATCAAGCGATTTTCTTCAAAGTTATTACATCA 532
Query 503 ATCCGATCCTTAACCTGATTTTCACGCCTGATCAATACTCGGATCGTCTCTTGAGATCCT 562
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 533 ATCCGATCCTTAACCGGATTTTCACGCCTGATCAATACTCAGATCATCTCTTGAGATCCT 592
Query 563 ATTCCACCTTTGTGCAAAATTTGTATGGTTTAGGTGCTAGAAAGATTGGAGTGACGACGT 622
||||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 593 ATTCCACCTTTGTCCAAAATTTGTATGGTTTAGGGGCTAGGAGGATTGGAGTGACGACGT 652
Query 623 TACCGCCGTTGGGTTGTTTACCTGCTGCAATAACGAC-GTTTGGTGAAGCT-GGGAACAA 680
||||||| || ||||||||||| || || ||||| | |||||||| | | ||||||||
Sbjct 653 TACCGCCATTAGGTTGTTTACCAGCAGCGATAAC-CCTGTTTGGTG-GGGTCGGGAACAA 710
Query 681 TACGTGCGTCGAAAGACTAAACCGA-GATGCGGTTTCCTTCAATACCAAACTCAACAACA 739
|| |||||| ||||||||||||| | ||||| |||||||||||||| |||||||||||||
Sbjct 711 TATGTGCGTGGAAAGACTAAACC-AGGATGCAGTTTCCTTCAATACGAAACTCAACAACA 769
Query 740 CGTCTATGAACTTAACCAACAATCTTCCCGGTCTGAAATTGGTCGTCTTTGACATCTATA 799
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 770 CGTCTATTAACTTAACCAACAATCTTCCCGGTCTGAAGTTGGTCGTCTTTGACATCTATA 829
Query 800 ATCCTCTGTTGAGCATGGTCATGAACCCTGTCGAGAATGGGTTTTTGGAATCAAGAAGGG 859
||||||| |||| ||||||||| |||||||||||| |||||||||| |||||||||||||
Sbjct 830 ATCCTCTATTGAACATGGTCATAAACCCTGTCGAGTATGGGTTTTTCGAATCAAGAAGGG 889
Query 860 CTTGTTGTGGAACCGGG-ACAGTGGAAACTTCGTTCCTATGTAATGCA-AGATCGGTGGG 917
|||||||||||| |||| ||| |||||||||||||||||||||||||| | ||||||||
Sbjct 890 CTTGTTGTGGAA-CGGGTACAATGGAAACTTCGTTCCTATGTAATGCATTG-TCGGTGGG 947
Query 918 TACATGTTCGAATGCTACCAATTACGTGTTTTGGGATGGTTTTCATCCATCCGAGGCAGC 977
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TACATGCTCGAATGCTACGAATTACGTGTTTTGGGATGGTTTTCATCCATCCGAGGCAGC 1007
Query 978 CAATCGTGTCATCGCAAATAATCTTCTTGTCCAAGGAATCCCCCTTATCTCTTAA 1032
||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1008 CAATCGTGTTATCGCAAATAATCTTCTTGTCCAAGGAATACCCCTCATCTCTTAA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5