BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487162

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03830.1 | Symbols:  | CDK inhibitor P21 binding protein | c...   438    3e-122
  AT2G44510.1 | Symbols:  | CDK inhibitor P21 binding protein | c...   316    1e-85 


> AT5G03830.1 | Symbols:  | CDK inhibitor P21 binding protein | 
chr5:1018338-1020460 FORWARD LENGTH=1282
Length=1282

 Score =  438 bits (237),  Expect = 3e-122
 Identities = 259/270 (96%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  363  GGACAATAAGTGCTTTAGAGAGCTAAAAGAGTTTCTTCTCAAAGTTTGTTCGGAGAAGAA  422
            ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  453  GGAGAATAAGTGCTTTAGAGAGCTAAAAGAGTTTCTTCTTAAAGTTTGTTCGGAGAAGAA  512

Query  423  AGTAGCTAGTGATCTAGAACTACTCGTAGAGAAAAAGGCGAAAGATGTCGGTTTATTGGT  482
             ||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct  513  TGTAGCGAGTGATCTAGAACTACTCTTAGAGAAAAAGGCCAAAGATGTTGGTTTATTGGT  572

Query  483  ATCTCAAAGAGTGATGAATCTTCCTCCACAACTCCTTCCTCCACTATATGATGGATTGTT  542
             ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  573  CTCTCAAAGAGTGATGAATCTTCCTCTACAACTCCTTCCTCCACTATATGATGGATTGTT  632

Query  543  CGACGAAGTCTCATGGGCCACTGAAGACGAGCCTACAGAACAGCTTCGAGGGTCATTCCG  602
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  633  CGACGAAGTCTCATGGGCCACTGAAGACGAGCCTACAGAAGAGCTTCGAGGGTCATTCCG  692

Query  603  CTTCAAGTCATATATTCTAATCACTAAGAT  632
            |||||||||||||||||||||| |||||||
Sbjct  693  CTTCAAGTCATATATTCTAATCGCTAAGAT  722


 Score =  276 bits (149),  Expect = 2e-73
 Identities = 192/212 (91%), Gaps = 5/212 (2%)
 Strand=Plus/Plus

Query  1    ATGCCTCGAAGGCCATCAGGGAGAAGAAGATTGTCAAAGTATCAACCTTTAGCATTTTCA  60
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  115  ATGCCTAGAAGGCCATCAGGGAGAAGAAGATTGTCAAAGTATAAACCTTTAGCATTTTCA  174

Query  61   CCGTTTATGCGTTCTCTTACCTTTGCTTCAACGGCTAGACGTAAATTGCCTCTTCCAGAT  120
             ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  175  TCGTTTATACGTTCTCTTGCCTTTGCTTCAACGGCTAGACGTAAATTGCCTCTTCCGGAT  234

Query  121  ATATCTTTTGATTCAAAGTACCCTAATTTATC-AATAATAGG-AAAGAGCAA-CAACTGT  177
            || |||||||||  ||||| || |||||| || || || ||| |||||| || || | ||
Sbjct  235  ATGTCTTTTGATGAAAAGTTCCATAATTTGTCTAAGAA-AGGGAAAGAGAAATCATC-GT  292

Query  178  TGGAATCCTCTGATGAAGAAGACTCTCAGGGA  209
            ||||||||||||||||||||||||||||||||
Sbjct  293  TGGAATCCTCTGATGAAGAAGACTCTCAGGGA  324


 Score =  111 bits (60),  Expect = 7e-24
 Identities = 64/66 (97%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  230  TAGCAGATGATGAGGATGATGCATTATTTGCTCTTGTCACTGCTCTTAACTTGGCAAGAT  289
            ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct  389  TAGCAGATGATGAGGATGAGGCATTATTTGCTCTTATCACTGCTCTTAACTTGGCAAGAT  448

Query  290  ACAAGG  295
            ||||||
Sbjct  449  ACAAGG  454


 Score = 89.8 bits (48),  Expect = 3e-17
 Identities = 56/60 (93%), Gaps = 0/60 (0%)
 Strand=Plus/Plus

Query  694   GAGGCACAAGAGATTCCTGAATTCAGACAGAGGTTGAAGTCTCTCATTGACGAACAATAA  753
             ||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct  981   GAGACACAAAAGATTCCTGAATTCAGAAAGAAGTTGAAGTCTCTCATTGACGAACAATAA  1040


> AT2G44510.1 | Symbols:  | CDK inhibitor P21 binding protein | 
chr2:18377070-18379210 FORWARD LENGTH=1318
Length=1318

 Score =  316 bits (171),  Expect = 1e-85
 Identities = 247/283 (87%), Gaps = 8/283 (3%)
 Strand=Plus/Plus

Query  363  GGACAATAAGTGCTTTAGAGAGCTAAAAGAGTTTCTTC-TCAAAGTTTGTTCGGAGAAGA  421
            |||||| ||||| ||||||||| ||||||||||||||| | ||||||||||| || ||||
Sbjct  619  GGACAACAAGTGTTTTAGAGAGTTAAAAGAGTTTCTTCGT-AAAGTTTGTTCTGAAAAGA  677

Query  422  A-AGTAGCTAGTGATCTAGAACTACTCGTAGAGAAAAAGGCGA-AAGATGTCGGTTTATT  479
            | | |||| | | |||||||| | ||| ||||||||||||| | ||||||| ||||||||
Sbjct  678  ATA-TAGCGAATAATCTAGAAATGCTCTTAGAGAAAAAGGC-ACAAGATGTTGGTTTATT  735

Query  480  GGTATCTCAAAGAGTGATGAATCTTCCTCCACAACTCCTTCCTCCACTATATGATGGATT  539
            |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  736  GGTATCTCAAAGAGTGATGAATCTTCCTCCACAACTTCTTCCTCCACTTTATGATGGATT  795

Query  540  GTTCGACGAAGTCTCATGGGCCA-CTGAAGACGAGCCTACAGAACAGCTTCGAGGGTCAT  598
            |||||| |||||||||||||| | | ||||| |||||||||||| |||||||| | ||||
Sbjct  796  GTTCGATGAAGTCTCATGGGCAATC-GAAGATGAGCCTACAGAAAAGCTTCGAAGATCAT  854

Query  599  TCCGCTTCAAGTCATATATTCTAATCACTAAGATTCATAAGCT  641
            |||| || ||||||||| ||||| | || |||||| | |||||
Sbjct  855  TCCGTTTTAAGTCATATCTTCTAGTTACCAAGATTTACAAGCT  897



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36570459016


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5