BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487163
Length=634
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03840.1 | Symbols: TFL1, TFL-1 | PEBP (phosphatidylethanola... 996 0.0
> AT5G03840.1 | Symbols: TFL1, TFL-1 | PEBP (phosphatidylethanolamine-binding
protein) family protein | chr5:1024641-1025812
REVERSE LENGTH=669
Length=669
Score = 996 bits (539), Expect = 0.0
Identities = 607/639 (95%), Gaps = 7/639 (1%)
Strand=Plus/Plus
Query 1 aaaa-aaaaTGGAGAATATGGGAACTAGAGTGATAGAGCCATTGATAATGGGGAGAGTGG 59
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9 AAAAGAAAATGGAGAATATGGGAACTAGAGTGATAGAGCCATTGATAATGGGGAGAGTGG 68
Query 60 TAGGAGATGTTCTTGATTTCTTCACTCCAACAATTAAGATGAACGTGAGTTATAACAAGA 119
||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 69 TAGGAGATGTTCTTGATTTCTTCACTCCAACAACTAAGATGAATGTTAGTTATAACAAGA 128
Query 120 AGCAAGTCTCCAATGGCCATGAGCTCTTTCCTTCCTCTGTTTCCTCTAAGCCTAGGGTTG 179
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 129 AGCAAGTCTCCAATGGCCATGAGCTCTTTCCTTCTTCTGTTTCCTCCAAGCCTAGGGTTG 188
Query 180 AGATCCATGGTGGTGATCTCAGATCCTTCTTCACTTTGGTGATGATTGATCCAGATGTTC 239
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 189 AGATCCATGGTGGTGATCTCAGATCCTTCTTCACTTTGGTGATGATAGACCCAGATGTTC 248
Query 240 CAGGTCCTAGTGACCCCTTTCTAAAAGAACACCTGCACTGGATCGTTACAAACATTCCCG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CAGGTCCTAGTGACCCCTTTCTAAAAGAACACCTGCACTGGATCGTTACAAACATTCCCG 308
Query 300 GCACAACAGATGCTACGTTTGGCAAAGAGGTGGTGAGCTATGAATTGCCAAGGCCAAGCA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GCACAACAGATGCTACGTTTGGCAAAGAGGTGGTGAGCTATGAATTGCCAAGGCCAAGCA 368
Query 360 TAGGGATACATAGGTTTGTGTTTGTTCTGTTCAAGCAGAAGCAAAGACGCGTTATCTTCC 419
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 369 TAGGGATACATAGGTTTGTGTTTGTTCTGTTCAGGCAGAAGCAAAGACGTGTTATCTTTC 428
Query 420 CCAATATCCCTTCGAGAGATCACTTCAACACTCGTAAATTTGCGGTGGAGTATGATCTTG 479
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 429 CTAATATCCCTTCGAGAGATCACTTCAACACTCGTAAATTTGCGGTCGAGTATGATCTTG 488
Query 480 GTCTCCCTGTAGCGGCTGTCTTCTTTAACGCACAAAGAGAAACCGCTGCTCGCAAACGCT 539
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 489 GTCTCCCTGTCGCGGCCGTCTTCTTTAACGCACAAAGAGAAACCGCTGCACGCAAACGCT 548
Query 540 AGTTTCATTATTGTCCATCGAA-TGCCAAAACGAAAGAAGAAAAAAT---TGTAATCTCC 595
|||||||| |||||| || || ||| |||| |||||||||||| | |||||||||
Sbjct 549 AGTTTCATGATTGTC-ATA-AACTGCAAAAATGAAAGAAGAAAATTTGCATGTAATCTCA 606
Query 596 TGTTTATTTATGTTCTGAATTCCCGTACTTTGAATAAAA 634
||||||||| ||||||||||| ||||||| |||||||||
Sbjct 607 TGTTTATTTGTGTTCTGAATTTCCGTACTCTGAATAAAA 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30592595523
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5