BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487165
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03870.1 | Symbols: | Glutaredoxin family protein | chr5:10... 1801 0.0
> AT5G03870.1 | Symbols: | Glutaredoxin family protein | chr5:1035658-1036967
REVERSE LENGTH=1310
Length=1310
Score = 1801 bits (975), Expect = 0.0
Identities = 1124/1194 (94%), Gaps = 17/1194 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTGTGTTTCTTCGAAACTAGGAAAGAAGAAACTCATAAGAGAGATTAGAGTCAAC 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTTGTGTTTCTTCGAAACTAGGCAAGAAGAAACTCATAAGAGAGATTAGAGTCAAC 60
Query 61 AATGGCGGCGATCACATTGTCTCACTTACTTCAACTACTTATGGTCATCTTGATCTCGAT 120
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 61 AATGGCGGCGATCACATTGTCTCTCTTACTTCAACTACTTATGGTCATCTCGATCTCGAT 120
Query 121 GAACGAGCAGAGACTTCTCCTAAGTCACTGGAAGTTACTAAAGGAGAGGTCTTTGATTCT 180
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |||
Sbjct 121 GAACGAGCAGAGACCTCTCCTAAGTCACTGGAAGTTACTAAAGGCGAAGTCTTTGAATCT 180
Query 181 GAAATCAAAGCAAGAAGATC-AATACAGAGAGATGATCCGGAGATTATCAATACATGGGA 239
||||||| | | |||||||| | || |||||||||||||||||||||||||||| |||||
Sbjct 181 GAAATCATACCGAGAAGATCTATTA-AGAGAGATGATCCGGAGATTATCAATACTTGGGA 239
Query 240 GCTTATGGAAGATCTTGAAGATTCAATGCTCGTTTCTAATCCACAGAAGATTAGTCCCAA 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GCTTATGGAAGATCTTGAAGATTCAATGCACGTTTCTAATCCACAGAAGATTAGTCCCAA 299
Query 300 ATCTCGTGGTATTTTTGGTAAATCATGGAAGACTCCGGTGAAATCGGTTGTTGAATCTCC 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCTCGTGGTATTTTCGGTAAATCATGGAAGACTCCGGTGAAATCGGTTGTTGAATCTCC 359
Query 360 GAAGAGAGGAAGTAGTAAGAGATTTGGAGGGAAAGAGAATAACTCGAGAGGTGTGAGTCC 419
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 GAAGAGAGGAAGTAGTAAGAGATTTGGAGGGAAAGAGAATAATTCGAGAGGTGTGAGTCC 419
Query 420 GAATCAGATTCTGAAGCCTAAGAACATTCTTGAAACTCCGAAGAGAGGAGTGATGCGTTT 479
|||||||||||||||||| ||||||||||||||||| ||||||||||| || ||||||||
Sbjct 420 GAATCAGATTCTGAAGCCGAAGAACATTCTTGAAACACCGAAGAGAGGTGTAATGCGTTT 479
Query 480 GAGTTTTCCT-TTGAAATCTGAAGAACCTTCGGTGGTGATTACGCAGAGGAGGAAGAGTT 538
|||||||||| || |||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 480 GAGTTTTCCTCTT-AAATCTGAAGAATCTTCGGTGACGGTTACGCAGAGGAGGAAGAGTT 538
Query 539 ATAGTCCAATGTTTGATCCAGATCTTGTGGCTTCTTACGAGAGAGAGTTGTCTCAAGAGC 598
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 ATAGTCCAATGTTTGATCCAGATCTTGTGGCTTCTTACGAAAGAGAGTTGTCTCAAGAGA 598
Query 599 AAGAACAGATCAAGATGGTGATTTCTCCGGTGGTGCATGAGAGCAGAAAAACAGAGAAAA 658
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 AAGAACAGATCAAGATGGTGATTTCTCCGGTGGTGCACGAGAGCAGAAAAACAGAGAAAA 658
Query 659 CCCGAGAGTCGGAGAGAATCCTTGAGAAGTTCCCTGAGAAATGTCCACCAGGAGGAGAGA 718
| |||| ||| | || ||||||||||||| |||||||||||||| |||||||||
Sbjct 659 C---AGAG----AGA-ATTC-TTGAGAAGTTCCCAGAGAAATGTCCACCGGGAGGAGAGC 709
Query 719 ACTCTGTGGTTATCTACATAACGACTCTTAGAGGGATAAGGAAGACGTTTGAGGATTGCA 778
|||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| |
Sbjct 710 ACTCTGTGGTGATCTACATAACAACTCTTAGAGGGATACGGAAGACGTTTGAGGATTGTA 769
Query 779 ATGTGGTAAGATCGATATTAGATTCACACGAAGTTCGATTCTCGGAGAGGGATGTGTCGA 838
||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct 770 ATGTGGTAAGATCGATATTAGATTCACACGAAGTTCGATTCTCAGAGCGAGATGTGTCGA 829
Query 839 TGCACTCGGTTTTTAAGGAAGAGATCAGGGGCATTATGGGAACGAAACATGTGAAGATAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGCACTCGGTTTTTAAGGAAGAGATCAGGGGCATTATGGGAACGAAACATGTGAAGATAC 889
Query 899 CTGCGGTATTCGTGAAAGGGAGGATGTTAGGAAGTGTTGAGGAAGTTATGAAGTTAGAGG 958
||||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||| |
Sbjct 890 CTGCGGTATTCGTTAAAGGGAGGATGGTAGGAAGTGTTGAGGAAGTGATGAGGTTAGAAG 949
Query 959 AAGAGGGCAAATTGGGAAT-TGTACTTGAAGGTATTCCCGCGGCGAGGCTAGGAGGCAGT 1017
| ||||||||||||||||| | |||||||||||||||| ||||||||||| |||||||||
Sbjct 950 AGGAGGGCAAATTGGGAATAT-TACTTGAAGGTATTCCGGCGGCGAGGCTTGGAGGCAGT 1008
Query 1018 TGCTGCCGTGGATGTGGAGGAATGAGATTTGTGATGTGTGTGGTTTGCAATGGAAGCTGC 1077
|||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 1009 TGCTGCCGTGGATGTGGAGGAATGAGATTTATGATGTGTGTTGTTTGCAACGGAAGCTGC 1068
Query 1078 AAGGTTAGGGGAG-AAGACAAGAAGAGTATGGTTAAGTGTTTGGAGTGTAATGAGAATGG 1136
|||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1069 AAGGTTAGGG-AGGAAGAGAAGAAGAGTATGGTTAAGTGTTTGAAGTGTAATGAGAATGG 1127
Query 1137 TTTGGTTCTATGTCCAATTTGTTCTTGAAAACGAGAATTAGTTTTGCCCTAATT 1190
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||
Sbjct 1128 TTTGGTTCTATGTCCAATTTGTTCTTAAAAAAGAGAATCAGTTTTGCCCTAATT 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5