BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487166
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03880.1 | Symbols: | Thioredoxin family protein | chr5:103... 1762 0.0
> AT5G03880.1 | Symbols: | Thioredoxin family protein | chr5:1038508-1041480
REVERSE LENGTH=1213
Length=1213
Score = 1762 bits (954), Expect = 0.0
Identities = 1059/1109 (95%), Gaps = 10/1109 (1%)
Strand=Plus/Plus
Query 1 aaaaaaaaaTTAGAAGAAGAAAAATCGATGGCGGGGATACTAGTGAACAATATCCTCCCT 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAACAAATTAGAAGAAGAAAAATCGATGGCGGGGATACTAGTGAACAATATCCTCCCT 60
Query 61 CAACCTCCGATTCTCCGATCG--GT-TTCTTCTTCGCGAAGAAGTTCAATTCGAACCCTA 117
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 CAACCTCCGATTCTCCGATCGCTTTCTTCTTCTTCGCGAAGAAGTTCAATTCGAACCCTA 120
Query 118 GTTATGGTTAAAG---CTTCCTCAGAACCTTCCGAGTCTATTTCAGTGTCCACGAAGACC 174
|||||||| |||| ||||||| ||||||||||||||| ||||||| ||||||||||||
Sbjct 121 GTTATGGTCAAAGCTTCTTCCTCTGAACCTTCCGAGTCTGTTTCAGTCTCCACGAAGACC 180
Query 175 AGTGACGACACTGGAGC---TGTTGTGTTCACTGCTCCTCCCGGTTTCAAGCCACCAGAG 231
||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct 181 AGTGACGACACTGGAGCTGTTGTTGTGTTCACTGCTCCTCCTGGTTTCAAGCCACCGGAG 240
Query 232 CCGAAACGGTTCGCCGTCAAATCCGGAAAACTATTCGATGTCTTGGGTGCAGCAATTGGA 291
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CCAAAACGGTTCGCCGTCAAATCCGGAAAACTCTTCGATGTCTTGGGTGCAGCAATTGGA 300
Query 292 TTGATTTTCCGATTCGGCACTGGGGTTTTCGTTTCTGGGTACTCTGCATCTTTCGTGTCT 351
||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 301 TTGTTTTTCCGATTCGGCACTGGTGTTTTCGTTTCTGGGTACTCTGCATCTTTTGTGTCT 360
Query 352 AAGGAAGAGATTCCAGCTGATCAGTATGCGTTGCGTTTAGGCGGGATCACGGTAAAGGAA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGGAAGAGATTCCAGCTGATCAGTATGCGTTGCGTTTAGGCGGGATCACGGTAAAGGAA 420
Query 412 ACCGCTAAGCTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGCTGT 471
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ACTGCTAAGGTCGGGCCTCGTCCTGAGAAACCCATTGAGATATATGAGTTTGAAGGCTGT 480
Query 472 CCCTTCTGCCGTAAGGTCAGGGAAATGGTTGCAGTGTTGGATCTTGATATTCTGTACTAT 531
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 CCCTTCTGCCGGAAGGTCAGGGAAATGGTTGCAGTGTTGGATCTTGATATTCTCTACTAT 540
Query 532 CCTTGTCCAAGAGGGAGTCCAAATTTCCGCCCGAAGGTTAAACAGATGGGCGGGAAACAA 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCTTGTCCAAGAGGGAGTCCAAATTTCCGCCCGAAGGTTAAACAGATGGGCGGGAAACAA 600
Query 592 CAGTTTCCGTACATGGTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATC 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGTTTCCGTACATGGTTGATCCCAATACCGGAGTGTCCATGTATGAATCAGATGGAATC 660
Query 652 ATCAAATATCTATCTGAGAAATATGGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGT 711
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCAAATATCTATCCGAGAAATATGGAGATGGAACAGTTCCTTTAAGTCTGTCACTTGGT 720
Query 712 GCTTTAACGGCTATAACAGCTGGCTTTGCAATGATTGGTCGTATGGGAAAGGGTAACTTG 771
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 721 GCTTTAACGGCTATAACAGCAGGCTTTGCAATGATTGGTCGTATGGGAAAGGGTAACTTG 780
Query 772 TACACACCTGCGAAACTACCACCTAAGCCACTAGAATTCTGGGCATACGAGGGTTCCCCA 831
|||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 781 TACACACCAGCGAAACTACCACCTAAGCCACTCGAATTCTGGGCATATGAGGGTTCTCCG 840
Query 832 TTCTGCAAGCTTGTACGCGAAGTTCTTGTAGAGCTCGAGTTACCACACATTCAGCGCAGT 891
|| || |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 841 TTTTGTAAGCTTGTACGCGAAGTTCTTGTAGAACTGGAGTTACCACACATTCAGCGCAGT 900
Query 892 TGTGCTCGCGGTAGCCCCAAACGGCAGGAATTGCTCGAGAAAGCTGGTCACTTTCAGGTG 951
|||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 901 TGTGCTCGTGGTAGCCCCAAACGGCAGGTATTGCTTGAGAAAGCTGGTCACTTTCAGGTG 960
Query 952 CCTTACCTGGAAGATCCAAACACTGGAGTTGCGATGTTTGAGAGTGCAGAAATCGTAGAG 1011
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 961 CCTTACCTGGAAGATCCAAACACTGGAGTCGCGATGTTTGAGAGTGCAGAAATTGTTGAG 1020
Query 1012 TATCTCAAGCAAACTTACGCTGCTTAAGTTTTCTTCTTCCTCACTCTATAC-GTATAGAT 1070
||||||||||||||||| ||||| ||||| ||| ||||||||||| ||||| ||||||||
Sbjct 1021 TATCTCAAGCAAACTTATGCTGCCTAAGTGTTCGTCTTCCTCACTTTATACCGTATAGAT 1080
Query 1071 ACATGTTAATTGTTGTGTGTATGTTCAGC 1099
| |||||||||||||||||||||||||||
Sbjct 1081 ATATGTTAATTGTTGTGTGTATGTTCAGC 1109
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5