BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487167
Length=538
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03890.1 | Symbols: | unknown protein; INVOLVED IN: N-termi... 845 0.0
AT3G10120.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 183 1e-45
> AT5G03890.1 | Symbols: | unknown protein; INVOLVED IN: N-terminal
protein myristoylation; LOCATED IN: cellular_component
unknown; BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G10120.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:1047150-1047689 FORWARD
LENGTH=540
Length=540
Score = 845 bits (457), Expect = 0.0
Identities = 515/542 (95%), Gaps = 8/542 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAGTGAGAAATGATGGGAAG 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAGTGAGAGATGATGGTAAG 60
Query 61 GTACTTGAATATAGAGAACCAATTAGTGTTCATCACATCCTTACTCAATTCTCTGGTCAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTACTTGAATATAGAGAACCAATTAGTGTTCATCACATCCTTACTCAATTCTCTGGTCAC 120
Query 121 TCTC-TCTCTCACAACAACACTCATCTTCTGCCTGATGCTAAGCTTCTCTCTGGTCGTCT 179
|| | |||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 121 TC-CATCTCTCACAACAACACTCATCTCCTGCCTGATGCTAAGCTTCTCTCTGGCCGTCT 179
Query 180 CTATTATCTCCTGCCTACAACAATGAACAAGAAGAAGGTCAACAAGAAAGTGACGTTTGC 239
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 180 CTATTATCTCCTGCCTACAACAATGACCAAGAAGAAGGTCAACAAGAAAGTGACCTTTGC 239
Query 240 AAATCCGGAGGTGGAAGACAACGAAAGATCACTAAGAGAAGAAGAAGATACTAGTGAAAG 299
|||||||||||||||| | ||||||||| ||| ||||||||||||||| ||||||||||
Sbjct 240 GAATCCGGAGGTGGAAGGCGACGAAAGATTACTTAGAGAAGAAGAAGATTCTAGTGAAAG 299
Query 300 CAACAGCAACATCGATGGTGATGACAACAAGAACGTAACTGTTGTGAGAATGAAGATCGT 359
||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 300 CAACAGCAATATCGATGGTGATGACACCAAGAACGTAACTGTTGTAAGAATGAAGATCGT 359
Query 360 TGTGCATAAGCAAGAGTTGGAGAAGCTACTTCAAGGAGGGTCGGTCCATGAGATGATGTA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TGTGCATAAGCAAGAGTTGGAGAAGCTACTTCAAGGAGGGTCGGTCCATGAGATGATGTA 419
Query 420 CCAGACTCTCGAGAAACAACTTTTGCTTACT--GA-TGATGGTGATGATCTTGATGAATG 476
||||||||| |||||||||||||| |||||| | ||||| |||||||||||| | ||
Sbjct 420 CCAGACTCTTGAGAAACAACTTTTACTTACTTCGTCTGATGATGATGATCTTGA--A-TG 476
Query 477 TAATAGCGGCTGGAGACCTGCGTTAGATAGCATACCCGAATCTGAAAGTCTCAGAAGAAC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TAATAGCGGCTGGAGACCTGCGTTAGATAGCATACCCGAATCTGAAAGTCTCAGAAGAAC 536
Query 537 AT 538
||
Sbjct 537 AT 538
> AT3G10120.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G03890.1);
Has 57 Blast hits to 57 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:3130072-3130891
FORWARD LENGTH=820
Length=820
Score = 183 bits (99), Expect = 1e-45
Identities = 414/554 (75%), Gaps = 69/554 (12%)
Strand=Plus/Plus
Query 1 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAGTGAGAAATGATGGGAAG 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 84 ATGGGGAACTGTTTAGTAATGGAGAAGAAAGTGATAAAGATAATGAGAAATGATGGGAAA 143
Query 61 GTACTTGAATATAGAGAACCAATTA-GTGTTCATCACATCCTTACTCAATTCTCTGGTCA 119
||| ||||||| |||| ||| || | | |||||||||||||| || ||||||||| |||
Sbjct 144 GTAGTTGAATACAGAGGACCTATGAAG-GTTCATCACATCCTCACCCAATTCTCTCCTCA 202
Query 120 CT-CTCTCTCTC--ACA-----AC-AACACT---CATCTTC-TGCCTGATGCTAAGCTTC 166
|| |||||||| || || |||| | ||||||| | || | || |||||||
Sbjct 203 CTACTCTCTCTTTGACTCTCTCACCAACAATTGTCATCTTCATCCCCAA-GCCAAGCTTC 261
Query 167 TCTCTGGTCGTCTCTATTATCTCCTGCCT-AC-A-AC-AA-TGAA-CAAG-A-A-GAAG- 216
||| ||| |||||||| ||||| |||| | | || || | || |||| | | ||||
Sbjct 262 TCTGTGGCCGTCTCTACTATCTATTGCCCCAGGAGACTAACTCAATCAAGCACATGAAGA 321
Query 217 -GTCAAC-AAGAAAGTGACGTTTGCAAATCCGGAGGTGGAAGACAACGAAAGATCACTAA 274
| | | |||||||| | |||||||||||| ||||||||| | || ||| || || ||
Sbjct 322 AGACGATGAAGAAAGTCAGGTTTGCAAATCCAGAGGTGGAA-A-AA-GAA-GAACAAGAA 377
Query 275 GA-GA-AGAAGAA--GATACTAGTGAAAGCAACAGCAACATCGATGGTGATGACAACAAG 330
|| || ||| || ||| | |||| ||||| | || | || || ||| | | |
Sbjct 378 GAAGATAGATTAACAGATTGTTGTGA---CAACA-C--CA---A-GGAGAAGACTA-ATG 426
Query 331 AACGTAACTGTTGTGAGAATGAAGATCGTTGTGCA-TAAGCAAGAGTTGGAGAAGCTACT 389
|| ||||||||| ||||||| |||||| | |||||||||| |||||||||| ||
Sbjct 427 ---GT----GTTGTGAGAGTGAAGATGGTTGTG-AGTAAGCAAGAGCTGGAGAAGCTGCT 478
Query 390 TCAAGGAGGGTCGGTCCATGAGATGATGTACCAG-ACTCTCGAGAAACAACTTTTGCTTA 448
||||||||| || || ||||| ||| | || || ||||| | || |||| | || |
Sbjct 479 TCAAGGAGGTTCTGTTCATGAAATGGTTTAT-AGGACTCTTGCTAAGCAACATCTG-TG- 535
Query 449 CTGATGATGGTGATGA-TCTTGATGAATGTAATAGCGGCTGGAGACCTGCGTTAGATAGC 507
|||||||| |||||| | | || || | || | | |||||||||| ||||||||||
Sbjct 536 -TGATGATGATGATGAGTGTC-ATAAA-G-AA--G-G-CTGGAGACCTTTGTTAGATAGC 587
Query 508 ATACCCGAATCTGA 521
|| || ||| ||||
Sbjct 588 ATTCCTGAAACTGA 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25770117411
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5