BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487170
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03910.1 | Symbols: ATATH12, ATH12 | ABC2 homolog 12 | chr5:... 3210 0.0
> AT5G03910.1 | Symbols: ATATH12, ATH12 | ABC2 homolog 12 | chr5:1054078-1057172
REVERSE LENGTH=2207
Length=2207
Score = 3210 bits (1738), Expect = 0.0
Identities = 1900/1979 (96%), Gaps = 7/1979 (0%)
Strand=Plus/Plus
Query 1 AATTATCACCAAATTAGAAATAGAAGTTGATTCGTTTTGGTTCGATTCAATTTGTTTTGG 60
|||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 2 AATTATCACCGAATTAGAATTAGAAGTTGATTCGTTTTGGTTCGATTAAATTTGTTTTGG 61
Query 61 AGAGAAATGTCATTTCTCCTCCGCGTAACACCGCCGCCGTGTCTTCTCATTCCTCCTCCG 120
|||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||
Sbjct 62 AGAGAAATGTCATTTCTCCT-C-C-TAACACCGCCGCCGTGTCTTCTCATTCCTCCGCCG 118
Query 121 CCGCTATCTCACCGCCGGAGCTCATCTCTCTTTCTCAAACATCCATTTCAACCATCTCCG 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 CCGCTATCTCATCGCCGGAGCTCATCTCTCTTTCTCAAACATCCATTTCAACCATCTCCG 178
Query 181 AGACCTCTGAGCTCCGGTAAACCATCCGCTCTCCGTCTCCGAGCCAATACAACAGTCAAT 240
|||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 179 AGACCTTTGAGCTTCTGTAAACCCTCCGCTCTCCGTCTCCGAGCCAATACAACAGTCAAT 238
Query 241 TCACTAAAA-CCCTTCGAAAATGTTAAACCCTATCTACAATCGGAATCTAAAACCATCCT 299
||||||||| ||| |||||| | ||||||||||||| |||||||||||||||||| ||||
Sbjct 239 TCACTAAAAGCCC-TCGAAACTATTAAACCCTATCTTCAATCGGAATCTAAAACCGTCCT 297
Query 300 CCTTGGCTGGCTCTGCAGCTGTGTCTCTGTTGTCTCGCTTTCTCAGATTGTTCCAAGACT 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 298 ACTTGGCTGGCTCTGCAGCTGTGTCTCTGTTGTCTCGCTTTCTCAGATTGTTCCTAGGCT 357
Query 360 CGGCTCCTTCACTTCCAGCCTAAACGCAAACGCCGCGAGCTTGATGAAGCTCAAAGGCGA 419
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 358 CGGCTCCTTCACTTCCAACCTTAACGCAAACGCCGCGAGCTTGACGAAGCTCAAAGGCGA 417
Query 420 ATGTCTCGTTTTGGCGGGTTTGGTTTTAGCTAAGGTTGTTGCTTATTATCTGCAGCAAGC 479
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 418 ATGTCTCGTTTTGGCGGGTCTGGTTTTGGCTAAGGTTGTTGCTTATTATCTGCAGCAAGC 477
Query 480 GTTTCTTTGGGAAGCTGCTTTGAATACTGTTTACAAGATTCGTGTTTTCGCGTATCGGAG 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 478 GTTTCTTTGGGAAGCTGCTTTGAATACTGTTTACAAGATTCGGGTTTTCGCGTATAGGAG 537
Query 540 GGTTTTAGAGAGGGAATTAGAGTTCTTTGAAGGTGGGAATGGGATTTCATCAGGAGACAT 599
|||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 GGTTTTAGAGAGAGAACTAGAGTTCTTTGAAGGTGGCAATGGGATTTCATCAGGAGACAT 597
Query 600 TGCTTACAGGATTACTGCTGAAGCTTCTGAAGTTGCTGACACTATCTATGCTCTTCTCAA 659
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TGCTTACAGGATCACTGCTGAAGCTTCTGAAGTTGCTGACACTATCTATGCTCTTCTCAA 657
Query 660 CACAGTTGTGCCCAGTGCTATCCAGATATTTGTAATGACGGCACATATGATTGTTGCAAG 719
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 658 CACAGTTGTGCCCAGTGCTATTCAGATATCTGTAATGACGGCACATATGATTGTTGCAAG 717
Query 720 TCCTGCCTTGACACTAGTCTCTGCAATGGTGATTCCATCTGTTGCGCTTCTTACAGCGTA 779
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 718 TCCTGCCTTGACACTAGTCTCTGCAATGGTGATACCATCTGTTGCGCTTCTTATAGCATA 777
Query 780 TCTTGGTGATCGGCTTCGTAAGATATCTAGAAAGGCACAGATTGCTTCTGCTCAACTTTC 839
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 778 TCTTGGTGACCGGCTTCGTAAGATATCTAGAAAAGCACAGATTGCCTCTGCTCAACTTTC 837
Query 840 TACTTACTTGAATGAGGTTCTTCCTGCAATTTTGTTTGTGAAGGCTAATAACGCAGAGAT 899
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 838 TACCTACTTGAATGAGGTTCTTCCTGCAATTTTGTTTGTCAAGGCTAATAACGCAGAGAT 897
Query 900 CTCTGAGAGTGTGAGGTTTCAGAGGTTTGCTCGTGCTGCCCTAGATGAAAATTTTAAGAA 959
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 898 CTCTGAGAGTGTGAGGTTTCAGAGGTTTGCTCGTGCTGACCTAGATGAACGGTTTAAGAA 957
Query 960 GAAGAAAATGAAGTCACTCATCCCTCAGATTGTTCAAGTTATGTATCTCGGATCATTGTC 1019
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GAAGAAAATGAAGTCACTTATCCCTCAGATTGTTCAAGTTATGTATCTCGGATCATTGTC 1017
Query 1020 GATATTTTGTGTTGGAGCAGTGATACTTGCAGGCTCTTCTTTAAGCTCTAGTGCAATTGT 1079
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1018 GATATTTTGTGTTGGAGCTGTTATCCTTGCAGGCTCTTCTTTAAGCTCTAGTGCAATTGT 1077
Query 1080 GTCCTTCGTAGCATCTTTAGCTTTCTTGATTGATCCTGTCCAGGATTTGGGAAAAGCTTA 1139
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1078 TTCCTTCGTGGCATCATTAGCTTTCTTGATCGATCCTGTCCAGGATTTGGGAAAAGCTTA 1137
Query 1140 TAATGAATTGAAGCAAGGAGAGCCAGCGATAGAACGTTTGTTTGATTTGACCTCTTTGGA 1199
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TAATGAATTGAAACAAGGAGAGCCAGCGATAGAACGTTTGTTTGATTTGACCTCTTTGGA 1197
Query 1200 ATCTAAGGTGATCGAGAGACCTGAGGCCATTCAATTGGAAAAAGTTGCTGGCGAAGTTGA 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1198 ATCTAAGGTGATCGAGAGACCTGAGGCCATTCAATTGGAAAAAGTTGCTGGAGAAGTTGA 1257
Query 1260 GTTATGCGATATATCATTTAAATATGACGAGAATATGCTTCCTGTTTTGGATGGGTTAAA 1319
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1258 GTTATGCGATATATCATTTAAATATGACGAAAATATGCTTCCCGTTTTGGATGGGTTAAA 1317
Query 1320 TCTTCATATTAAAGCAGGAGAGACTGTAGCTCTTGTTGGGCCATCTGGAGGAGGAAAGAC 1379
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1318 TCTTCATATTAAAGCAGGAGAGACTGTAGCTCTTGTTGGACCATCTGGAGGAGGAAAGAC 1377
Query 1380 AACACTGATCAAATTGCTCCTCCGCCTTTATGAACCTTCATCTGGCTCTATCTTCATTGA 1439
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1378 AACACTGATCAAATTGCTCCTCCGCCTTTACGAACCTTCATCTGGCTCTATCATCATTGA 1437
Query 1440 CAAAAATGACATCAAGGATATCAAATTGGAAAGTTTGAGGAAGCATGTTGGTCTGGTTTC 1499
||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct 1438 CAAAATTGACATCAAGGATATCAAACTGGAAAGTTTGAGGAAACATGTTGGTCTAGTTTC 1497
Query 1500 ACAGGACACAACTCTGTTTTCAGGGACAATTGCTGACAACATTGGGTACAGAGATCTCAC 1559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 ACAGGACACAACTCTGTTTTCAGGGACAATTGCTGACAACATTGGGTACAGAGATCTCAC 1557
Query 1560 GACAGGAATTGACATGAAAAGAGTTGAGCTTGCTGCAAAAACTGCAAATGCTGATGAATT 1619
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GACAGGAATTGACATGAAGAGAGTTGAGCTTGCTGCAAAAACTGCAAATGCTGATGAATT 1617
Query 1620 TATCAGAAACTTACCAGAGGGATACAACACAGGAGTTGGTCCCAGGGGTTCAAGCTTAAG 1679
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 TATCAGAAACCTACCAGAGGGATACAACACAGGAGTTGGTCCCAGGGGTTCAAGCTTAAG 1677
Query 1680 CGGAGGCCAGAAGCAAAGACTAGCTATCGCAAGAGCGCTCTATCAGAATTCATCGGTACT 1739
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1678 CGGAGGCCAGAAGCAAAGACTAGCTATCGCAAGAGCGCTCTATCAGAAATCATCCATACT 1737
Query 1740 GATTTTGGATGAAGCAACATCAGCATTGGATAGTTTGTCGGAGTTGCTAGTCAGAGAAGC 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GATTTTGGATGAAGCAACATCAGCATTGGATAGTTTGTCGGAGTTGCTAGTCAGAGAAGC 1797
Query 1800 TCTTGAACGTGTAATGCAAGACCATACGGTAATTGTGATAGCACATAGACTGGAGACAGT 1859
|||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1798 TCTTGAACGTGTAATGCAAGACCATACGGTGATAGTGATTGCACATAGACTGGAGACAGT 1857
Query 1860 GATGATGGCGCAGAGAGTGTTCTTGTTAGAGAGGGGAAAGCTAAAGGAATTGAATCGCTC 1919
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1858 GATGATGGCGCAGAGAGTGTTCTTGGTAGAGAGGGGAAAACTAAAGGAATTGAATCGCTC 1917
Query 1920 TTCTCTGTTAAGTACTCACAAGGACTCACT-ATCATCAGCTGGACTCGTGATTTAAGAT 1977
||||||||||||||||||||| |||||||| | ||||||||||||||||||||| ||||
Sbjct 1918 TTCTCTGTTAAGTACTCACAAAGACTCACTGA-CATCAGCTGGACTCGTGATTTGAGAT 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97941263295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5