BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487171

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03920.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   758    0.0  


> AT5G03920.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G03930.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:1058146-1058769 FORWARD LENGTH=624
Length=624

 Score =  758 bits (410),  Expect = 0.0
 Identities = 551/615 (90%), Gaps = 26/615 (4%)
 Strand=Plus/Plus

Query  1    GTTAAAAGTCGATGGAGAAATCCCCGGTGGTCATGGCCGAAGAAGGAGAACACTCCGGAG  60
            ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  1    GTTAAAAGTAGATGGAGAAGTCCCCGGTGGTCATGGCCGAAGAAGGAGAACACTCGGGAG  60

Query  61   CTAAGGAACTTGCCAAACCC---A-----A--T---ATCT---C-----CAT---CGTGT  96
            ||||||||||| ||||||||   |     |  |   ||||   |     |||   |||||
Sbjct  61   CTAAGGAACTTCCCAAACCCAAAATCTCCATGTCGGATCTCACCTTTGTCATAGGCGTGT  120

Query  97   ACACAACCAAATCAAAGAAGTTAACACTTGTAGAATCTGGTAAGAACCGCGAGTTTAGCC  156
            |||||||||||||||||||||||||| ||||||||| |||   | |||||||||||| ||
Sbjct  121  ACACAACCAAATCAAAGAAGTTAACAGTTGTAGAATTTGGCGCGGACCGCGAGTTTAACC  180

Query  157  AC-AATGACCGGTTCCAAATAGAAATCGTAGACTTGCGCCGTTTCGAAGTGCCCAAGTCC  215
             | |||||||||||| |||||||||||||||||||| | ||||| ||| |||||||||| 
Sbjct  181  -CTAATGACCGGTTCAAAATAGAAATCGTAGACTTGAGTCGTTTTGAACTGCCCAAGTCT  239

Query  216  AGTATGGGTGATGTAACGATCACTTGGGAAGTCGTTTATAAGAAAGATTGGCAAAACGTT  275
             |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct  240  GGTATGGATGATGTAATGATCACTTGGGAAGTCGTTTATAAGAAAGATTGGCAAAACATT  299

Query  276  GCCACAATCGTTAAAGCTCGAAGGTCATTAGACACAAACTTACGATGGTTGTTCAACGAT  335
            | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GTCACAATCGTTAAAGGTCGAAGGTCATTAGACACAAACTTACGATGGTTGTTCAACGAT  359

Query  336  CTTCCTGCTCCAGAAGATCTAATCAGACGTGGCCTAACCGCCGATGTCAAGGTGAGTTTA  395
            |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  360  CTTCTTGCTCCAGAAGATCTAATCAGACGTGGCCTAACCGGCGATGTCAAGGTGAGTTTA  419

Query  396  AACGGCGACTTACTTGACAAGATCAGCCTTGAAATATTCATCGAAAACGACAAGAGATAT  455
            |||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||
Sbjct  420  AACGGCGACTTACTTGACAAGATCAGCCTTGAGATATTCATTGAAAGCGACCAGAGATAT  479

Query  456  TTTTCCCCTGACGATACTCTTAGATATCTTCAATGTTTTTTCTTCTCTAAAAACTAATTA  515
            ||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct  480  TTTTCCCCTGAAGATACTCTTAGATATCTTCAATGTTTTTTCCCCTCTAAAAACTAATTA  539

Query  516  TTATGTATATCCAAAGTCTATGAAAGTTaaaaaaaTGTATGCGTTTCTACCTAAATAATC  575
            |||||||||| |||||||| ||||| ||||||| ||||| ||||||||||||||||||||
Sbjct  540  TTATGTATATACAAAGTCTGTGAAATTTAAAAATATGTAAGCGTTTCTACCTAAATAATC  599

Query  576  ATGAGCTTTGTTTTG  590
            | |||||||||||||
Sbjct  600  AAGAGCTTTGTTTTG  614



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28382293055


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5