BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487172

Length=534
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03930.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   617    3e-176


> AT5G03930.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G03920.1); 
Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:1059504-1060154 
FORWARD LENGTH=651
Length=651

 Score =  617 bits (334),  Expect = 3e-176
 Identities = 470/533 (88%), Gaps = 20/533 (4%)
 Strand=Plus/Plus

Query  1    GTGATCATGGCCAAAGAAGGAGAACATTCCGGAGCTAAGGAAGTGAAACTTACCAAACCC  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTGATGATGGCCAAAGAAGGAGAACATTCCGGAGCTAAGGAAGTGAAACTTACCAAACCC  60

Query  61   AAAATCTCCTTGTCGGATCTCACCTTTGTCATTTACGTAACTACC-GTAGAAAAGATATC  119
            ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct  61   AAAATTTCCTTGTCGGATCTCACCTTTGTCATTTACGTAACTACCCG-AGAAAAGCTATC  119

Query  120  ATCTTCTTGCAATCA-TTAT-ACGGAGAAAGAATTTAAGAAATGTGGTGCGGAGCTAGAG  177
            |||||||  || | | || | | ||||| |  | ||||||||||||| ||||||||||||
Sbjct  120  ATCTTCTACCA-TAAGTTGTGA-GGAGATACCACTTAAGAAATGTGGCGCGGAGCTAGAG  177

Query  178  TGTGGCTCCAATGATCGGTTCCATATACAAGTCGAAAACTTGAGTCATAGGGGAATCTCC  237
            ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||
Sbjct  178  TGTGGCTCCAATGATCGATTCCATATACAAGTCGAAAACTTGAGCCATATGGGAATCTCC  237

Query  238  AAGTCTAGTATGGCTGGTGTAGAA-ATCAAGTGCGAAGTCATTTATAAGGATGATTGGGA  296
            |||||||| |||||||||||| || ||| ||||||| |||||||||||||| || | |||
Sbjct  238  AAGTCTAGAATGGCTGGTGTA-AAGATCGAGTGCGAGGTCATTTATAAGGAAGACTCGGA  296

Query  297  AGACG-G-CGGC--TTCATAATCTTTGATGCTCAAAGGCCATTAGACACAAACTTTGGAT  352
            ||||| | |||   || | |||| || ||||| |||||||||||| ||||||||||||||
Sbjct  297  AGACGAGGCGGTAGTT-AGAATCGTTAATGCTGAAAGGCCATTAGGCACAAACTTTGGAT  355

Query  353  GGCTGAACAACGATCTT-TTAGCTCCAAATAGGTTATATCGCGGCCTAGTC-GCCGACAT  410
            ||||||||||||||||| || ||||||  ||| | ||  || || |||  | ||||| ||
Sbjct  356  GGCTGAACAACGATCTTCTT-GCTCCAC-TAGCTCAT--CGTGGTCTAA-CAGCCGAAAT  410

Query  411  CGAGCTGAGTGACAACAGCGAGTTATTGGACAAGATCGACCTTCAGATATTCCACCGAGG  470
            | ||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  411  CCAGCTGAGTTTCAACAGCGAGTTATTGGACAAGATCGACCTCCAGATATTCCACCGAGG  470

Query  471  CGAAGGAAGATATTTTTCCCTTGACGATACTCTTAGTTATCTTCAATGTTTTT  523
            ||| || |||||||||||||  |||||||||||| ||||||||||||||||||
Sbjct  471  CGAGGGGAGATATTTTTCCCAAGACGATACTCTTGGTTATCTTCAATGTTTTT  523



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25569180823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5