BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487175
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069... 1927 0.0
AT5G03858.1 | Symbols: | Pseudogene of AT5G03960; IQD12 (IQ-do... 510 1e-143
AT1G76705.1 | Symbols: | calmodulin binding | chr1:28786450-28... 278 1e-73
> AT5G03960.1 | Symbols: IQD12 | IQ-domain 12 | chr5:1068260-1069978
REVERSE LENGTH=1357
Length=1357
Score = 1927 bits (1043), Expect = 0.0
Identities = 1218/1304 (93%), Gaps = 5/1304 (0%)
Strand=Plus/Plus
Query 2 TCTTTCTTCCTGATTCTCATCATTTGGTTTTTATTTGTTAC-CAGAGAACTTCATCTAAT 60
|||||||||||||||||||||||||||||| | || ||| | |||||||| ||||||||
Sbjct 16 TCTTTCTTCCTGATTCTCATCATTTGGTTTGTGTTCGTT-CATAGAGAACTCCATCTAAT 74
Query 61 GGCGAAGAGGAGGTCGTGGTTCGGTTGGATGAAAAGACTATTCATCTGCGAGGCGAAAGC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 75 GGCGAAGAGGAGGTCGTGGTTCGGTTGGATGAAAAGACTATTCATCTGCGAGGCCAAAGC 134
Query 121 AAAACCAGAGAAGCCAAGGAGATTGAGATGGGTGTTTAGAAGGCTGAAGCTGAGACCGCA 180
|| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 135 AAGAGCAGAGAAGCCAAGGAGATTGAGATGGGTGTTTAAAAGGCTGAAGCTGAGACCGCA 194
Query 181 GATTGCAACTTATGGGCAAGAGACACGGACTTTGAACGAAGCAACACAGGATCAGAGAAA 240
| |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 195 GCTTGCCACTTGTGGGCAAGAGACAAGGACTTTGAACGAAGCAACACAGGATCAGAGGAA 254
Query 241 ACATGCCATGAATGTAGCCATTGCCACAGCTGCAGCAGCAGAGGCGGCGGTTGCAGCCGC 300
|||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 255 ACATGCAATGAATGTAGCCATTGCCACGGCTGCAGCAGCTGAGGCAGCGGTTGCAGCCGC 314
Query 301 TAAGGCAGCTGCTGAAGTTGTCCGGATGGCGGGAAACGCCTTCACGTCACAACATTTTGT 360
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 315 CAAGGCAGCTGCTGAGGTTGTCCGGATGGCGGGAAACGCCTTCACATCACAACATTTTGT 374
Query 361 CAAGAAACTCGCTCCCAATGTGGCTGCTATCAAGATTCAGAGTGCATTCAGGGCTTATCT 420
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 375 CAAGAAGCTCGCTCCCAATGTGGCTGCTATCAAGATTCAGAGTGCATTCAGGGCTTCTCT 434
Query 421 GGCCAGGAAAGCGTTGCGGGCGCTAAAGGCACTCGTAAGGCTTCAAGCAATTGTGCGTGG 480
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 435 GGCCAGGAAAGCGTTGCGGGCGCTTAAGGCACTTGTAAGGCTTCAAGCAATTGTGCGTGG 494
Query 481 CCGAGCTGTTAGGCGAAAGGTTTCTGCTTTATTGAAGTCTTCACTCACCAACAAAGCTTC 540
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 495 CCGAGCTGTTAGGCGAAAGGTTTCTGCTTTATTGAAGTCTTCACACTCCAACAAAGCTTC 554
Query 541 AAGATCAAGCATCATCCAGAGA-AACACAGAGAGAAAGCATTGGTCCAAGACCAAATCTG 599
|| ||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 555 AACATCAAACATCATCCAGAGACAA-ACAGAGAGAAAGCATTGGTCCAATACCAAATCTG 613
Query 600 AGATCAAAGAAGAGCTTCAGGTATCGCACCATTCGATGTGTAACTCGAAGGTCAAGTGCA 659
|||||||||| ||||||||||||||| |||||||| |||||||||| ||||| |||||||
Sbjct 614 AGATCAAAGAGGAGCTTCAGGTATCGAACCATTCGCTGTGTAACTCAAAGGTGAAGTGCA 673
Query 660 ATGGTTGGGACAGTAGCGCTCTCACAAATGAAGACATGAAAGCCATATGGTTGAGGAAGC 719
|||||||||||||||| |||||||| || ||||| || ||||||||||||||||||||||
Sbjct 674 ATGGTTGGGACAGTAGTGCTCTCACGAAGGAAGATATAAAAGCCATATGGTTGAGGAAGC 733
Query 720 AAGAAGGTGTGATCAAGCGCGATCGTATGTTGAAATACTCCCGCTCTCATCGGGAGAGAA 779
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 734 AAGAAGGTGTGATCAAGCGCGATCGTATGTTGAAATACTCCCGGTCTCAACGGGAGAGAA 793
Query 780 GAAGTCCTCATATGCTTATGGAGTCGTTGTACACTAAAGATATGGGGATGCGAAGCTGTC 839
||||||||||||||||| ||||||| ||||| |||| |||||||||||| |||||||||
Sbjct 794 GAAGTCCTCATATGCTTGTGGAGTCACTGTACGCTAAGGATATGGGGATGAGAAGCTGTC 853
Query 840 GGCTAGAACATTGGGGTGGATCCAAGTCTGCAAAATCCATAAACTCATTTCTCATTCCAA 899
|||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 854 GGCTGGAACATTGGGGTGAATCCAAGTCTGCAAAATCCATCAACTCATTTCTCATTCCAA 913
Query 900 GTGAAATGCTTGTCCCTACAAAAGTGAAGCTCAGAACTTTGCAGAGACAAGACTCTGGTG 959
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 914 GTGAAATGCTTGTCCCTACAAAAGTAAAGCTTAGATCTTTGCAGAGACAAGACTCTGGTG 973
Query 960 ATGGACAAGACTCTCCATTTTCTTTCCCAAGGAGATCATTCAGCCGTCTGGAACAGAGTT 1019
||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 974 ATGGACAAGACTCTCCATTTTCTTTCCCAAGGAGATCTTTCAGCCGTTTGGAGCAGAGTA 1033
Query 1020 TATTAGAGGACGAGAGCTGGATTCCAAGCTCCAACAGTTTCCAACCTTACATGAGTATGA 1079
|||| || |||||||||||| ||| ||| ||||| ||||||| || ||||||||| |||
Sbjct 1034 TATTGGAAGACGAGAGCTGGTTTCAAAGATCCAATGGTTTCCAGCCGTACATGAGTGTGA 1093
Query 1080 CAGAGTCTGCAAGGGAAAAGATGAGATCACTAAGCACACCAAGGCAACGTGTAGGGCTGA 1139
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1094 CAGAGTCTGCAAGGGAAAAGATGAGATCACTGAGCACACCAAGGCAACGTGTAGGGATCA 1153
Query 1140 TGGACTCTTTGTTTGATAACTACAAGAAGGATGGGGATAAAGGATCTCTCTGGTCTTCTT 1199
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1154 TGGATTCTTTGTTTGATAACTACAAGAAGGATGGGGATAAAGTCTCTCTCTGGTCTACTT 1213
Query 1200 TTGTCTGTGAAAATAGTAAGAACAACAACGCTAAGAAGTCGTCCCTGACCACATATCAAC 1259
||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1214 TTGTCTGCGAAAATAGTAAGATCAACAACGCTAAGAAGTCGTCTCTGACCACATATCAAC 1273
Query 1260 ATAATTGTTAAATCTTGAACATTCATGTCATTTTGTTT-TTTGG 1302
||||||||| |||||||||||||||||||| ||| ||| |||||
Sbjct 1274 ATAATTGTTGAATCTTGAACATTCATGTCACTTTATTTCTTTGG 1317
> AT5G03858.1 | Symbols: | Pseudogene of AT5G03960; IQD12 (IQ-domain
12); calmodulin binding protein | chr5:1031564-1032032
REVERSE LENGTH=469
Length=469
Score = 510 bits (276), Expect = 1e-143
Identities = 432/500 (86%), Gaps = 39/500 (8%)
Strand=Plus/Plus
Query 773 GAGAGAAGAAGTCCTCATATGCTTATGGAGTCGTTGTACACTAAAGATATGGGGATGCGA 832
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||
Sbjct 1 GAGAGAAGAAGTCCTCATATGCTTGTGGAGTCATTGTACACTAAAGATATGGGGATGAGA 60
Query 833 AGCTGTCGGCTAGAACATTGGGGTG---GATCCAAGTCTGCAAAATCCATAAACTCATTT 889
||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 61 AGCTGTCGGCTGGAACATTGGGGTGATCAATCCAAGTCTGCAAAATCCATAAACTAATTT 120
Query 890 CTCATTCCAAGTGAAATGCTTGTCCCTACAAAAGTGAAGCTCAGAACTTTGCAGAGACAA 949
||||||||||||||||||||||| |||||||||||| | || | || || |
Sbjct 121 CTCATTCCAAGTGAAATGCTTGTTCCTACAAAAGTG-A----AG--C-TT------AC-A 165
Query 950 GACTCTGGTGATG-GACAAGACTCTCCATTTTCTTTCCCAAGGAGATCATTCAGCCGTCT 1008
||| | || | | |||||||||||||||||||||||| |||||||| ||||||||| |
Sbjct 166 -ACT-TTGT-A-GAGACAAGACTCTCCATTTTCTTTCCTAAGGAGATTTTTCAGCCGTTT 221
Query 1009 GGAACAGAGTTTATTA---GAGGACGAGAGCTGGATTCCAAGCTCCAACAGTTTCCAACC 1065
||| |||||| ||||| ||||||||||||||| ||| ||||||| | |||| || ||
Sbjct 222 GGAGCAGAGTCTATTAGTGGAGGACGAGAGCTGGTTTCAAAGCTCCGATGGTTTGCAGCC 281
Query 1066 TTACATGAGTATGACAGAGTCTGCAAGGG-AAAAGATGAGATCACTAAGCACACCAAGGC 1124
|||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 282 TTACATGAGTGTGACAGAGTCTGCAAGGGCAAAAGATGAGATCACTGAGCACACCAAGGC 341
Query 1125 AACGTGTAGGGCTGATGGACTCTTTGTTTGATAACTACAAGAAGGATGGGGATAAAGGAT 1184
||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 342 AACGTGTAGGGCTCATGGATTCTTTGTTTGATAACTACAAGAAGGATGGG---------- 391
Query 1185 CTCTCTGGTCTTCTTTTGTCTGTGAAAATAGTAAGAACAACAACGCTAAGAAGTCGTCCC 1244
|||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 392 CTCT--GGTCTTCTTTTGTCTGTGAAAATAGTAAGATCAACAACGCTAAAAAGTCGTCCC 449
Query 1245 TGACCACATATCAACATAAT 1264
|||| |||||| ||||||||
Sbjct 450 TGACTACATATTAACATAAT 469
> AT1G76705.1 | Symbols: | calmodulin binding | chr1:28786450-28787328
FORWARD LENGTH=651
Length=651
Score = 278 bits (150), Expect = 1e-73
Identities = 178/192 (93%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 1106 TCACTAAGCACACCAAGGCAACGTGTAGGGCTGATGGACTCTTTGTTTGATAACTACAAG 1165
||||| |||||||||||||||||||||||||| ||||| |||||||||| ||||||||||
Sbjct 298 TCACTGAGCACACCAAGGCAACGTGTAGGGCTCATGGATTCTTTGTTTGTTAACTACAAG 357
Query 1166 AAGGATGGGGATAAAGGATCTCTCTGGTCTTCTTTTGTCTGTGAAAATAGTAAGAACAAC 1225
|||||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 358 AAGGATGGGGATAAAGTCTCTCTCTGGACTTCTTTTGTCTGCGAAAATAGTAAGATTAAC 417
Query 1226 AACGCTAAGAAGTCGTCCCTGACCACATATCAACATAATTGTTAAATCTTGAACATTCAT 1285
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AACGCTAAGAAGTCGTCTCTGACCACATATCAACATAATTGTTAAATCTTGAACATTCAT 477
Query 1286 GTCATTTTGTTT 1297
||| ||| |||
Sbjct 478 ATCACTTTATTT 489
Score = 222 bits (120), Expect = 6e-57
Identities = 136/144 (94%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 653 AAGTGCAATGGTTGGGACAGTAGCGCTCTCACAAATGAAGACATGAAAGCCATATGGTTG 712
||||||||||| ||||||||||| |||||||| || ||||| || |||||||||||||||
Sbjct 148 AAGTGCAATGGCTGGGACAGTAGTGCTCTCACGAAGGAAGATATAAAAGCCATATGGTTG 207
Query 713 AGGAAGCAAGAAGGTGTGATCAAGCGCGATCGTATGTTGAAATACTCCCGCTCTCATCGG 772
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 208 AGGAAGCAAGAAGGTGTGATCAAGCGCGATCGTATGTTGAAATACTCCCGGTCTCATCAG 267
Query 773 GAGAGAAGAAGTCCTCATATGCTT 796
||||||||||||||||||||||||
Sbjct 268 GAGAGAAGAAGTCCTCATATGCTT 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5