BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487176
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03970.1 | Symbols: | F-box associated ubiquitination effec... 1245 0.0
> AT5G03970.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:1071568-1073423 REVERSE LENGTH=1470
Length=1470
Score = 1245 bits (674), Expect = 0.0
Identities = 806/870 (93%), Gaps = 8/870 (1%)
Strand=Plus/Plus
Query 1 TTCAGCGTTCGTCGTCATCAAGTGTCTGCAATGTCTTGTTCTGCCAGGTTAAAAACCAGT 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 31 TTCAGCGTTCGTCGTCACCAAGTGTCTGCAATGTCTTGTTCTGCCAGGTTAAAAACCAAT 90
Query 61 TTGGGGATGACTTCTGCTTTGAGTGCTCATGAGGTTCTTAACAGTAATGATACTATGTGT 120
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 91 TTGGGGATGACTTCTGCTCTGAGTACTCATGAGGTTCTTAACAGTAATGATACTATGTGT 150
Query 121 GAGATTCTTCTCCTGCTTCCACCAGAAACAATCTACAAGCTGATTTTGGTGTCCAAGAGG 180
||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 151 GAGATTCTTATCCTGCTTCCACCAGAAACGATATACAAGCTGATTTTGGTGTCCAAGAGA 210
Query 181 TGGCTTCAGATTATAGCCAGCCCTTACTTCCGTCACACTTACTTAGCCAAGTGGAACCCT 240
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 211 TGGCTTGAGATTATAGCCAGCCCTTGCTTCCGTCACACTTACTTAGCCAAGTGGAAACCT 270
Query 241 AGCTTTGAACTCATTGGCTTCCTCGTCTGTAGCTCAACGTACCTTGGAAGACGCGTAGAT 300
| |||||||||||||||||| ||||||| ||||||| |||||||||||||||| |||||
Sbjct 271 AATTTTGAACTCATTGGCTTCTTCGTCTGCAGCTCAATGTACCTTGGAAGACGCATAGAT 330
Query 301 GGAGCCCGTCGCCCTCGTGCTGAGCCATCGCTTCCTTTACTCTCAACCAGCAGTATTGGT 360
||| | ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 331 GGAACTCGTCGCCCTCGCGCTGAGCCATCTCTTCCTTTGCTCTCAACCAGCAGTATTGGT 390
Query 361 GATGAAATTGAATCCTCTGGCATTCTGAAAAAACTTGGATACTACATCGACTCTTCAGAC 420
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||
Sbjct 391 GATGAAATTGAATCCTCTGGTATTCTGAAAAAGCTTGGATACTACATCGACTCTGCAGAT 450
Query 421 GGTCTTTTACTTTGTGGCCGCCATCCAAAAGCTTACTACTTGTGGGATCCAAGTACACAG 480
|||||| |||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 451 GGTCTTCTACTCTGCGGCCGCCATCCAAAAGCTTACTACTTGTGGGATCCGAGTACACAG 510
Query 481 AAGCAGCAGCAACTTCCACGTCCCAGAGTTCATTTCGAAGAACTTTGTATGTCTTTGATT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 AAGCAGCAGCAACTTCCACGTCCCAGAGTTCATTTCGAAGAACTTTGTATGTCTTTGATT 570
Query 541 ACTGAGGATTGTCCTGATAAAGGGTTTAGCTACAAGGTGATCCGGGCAGAGAGTGTAGGC 600
|||||||| |||||||| |||||||||||||||||||| ||||||||||| |||||| |
Sbjct 571 TCTGAGGATAGTCCTGATCAAGGGTTTAGCTACAAGGTGGTCCGGGCAGAGTGTGTAGCC 630
Query 601 TTTACTGCTCAA-AGTACAAAGTTGAAGGTAGAGACTTTTTCCTCGAAAACTTCTACGTG 659
||| ||| | || ||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 631 TTTCCTGTT-AACAGTACAAAGGTGAAGGTAGAGACTTTTTCCTCAAAAACTTCTACGTG 689
Query 660 GAGCTACTCAGAGCTTACTTGTC-CTGAGCCTATATCTCTCAGTCCGTGGACTCTTGGTA 718
||||||||||||||||| ||||| | |||||| |||||||||| |||||||||| || |
Sbjct 690 GAGCTACTCAGAGCTTATTTGTCTC-GAGCCTCTATCTCTCAGCCCGTGGACTCCAGGGA 748
Query 719 GAGTGATCAAAGGTGTTGTTTACTGGCATGCCAGAGGAGGTAAAGTTGCCATGTATGACT 778
||||||| ||||| |||||||| |||||||| |||||||||||| ||||||| |||||||
Sbjct 749 GAGTGATTAAAGGCGTTGTTTATTGGCATGCTAGAGGAGGTAAAATTGCCATATATGACT 808
Query 779 CAAACAGTGAGGAGAAACGTG-TGGATATGATAAAGCTTCCGAAAACATATGATTATGAT 837
||||||||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||
Sbjct 809 CAAACAGTGAGGAGAAACG-GATTGATGTGATAAAGCTTCCGAAAACATATGACTATGAT 867
Query 838 GAACAGGTTCTGGGCGAAACC-ATTGATGG 866
|||||||||||||| |||||| || |||||
Sbjct 868 GAACAGGTTCTGGGAGAAACCGAT-GATGG 896
Score = 451 bits (244), Expect = 6e-126
Identities = 301/329 (91%), Gaps = 2/329 (1%)
Strand=Plus/Plus
Query 872 GGACTAAAGAAACACAGCTGCTTGCGTTCCTCAATCAGAAGTCGGACTCGGTTTTCATCA 931
||||||||||||| |||||||||||| || |||||||||||||||||| ||| | |||||
Sbjct 1049 GGACTAAAGAAACGCAGCTGCTTGCGCTCTTCAATCAGAAGTCGGACTTGGTGTACATCA 1108
Query 932 GGTGTGAAACCCACATCTTCATCTATGACACAGAGACTAAAAGGGTCGAAGTAGTTCAGT 991
| ||||| || || |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1109 GATGTGATACACAAATCTTCATCTATCACACAGAGACTAAAAGGGTCGAAGTAGTTCAGT 1168
Query 992 ACCAAGGACGAAAATCAACATTCGTTTGGGATTACTGCAAAGTCGTGCCTTACTTTCGAC 1051
|||||||||||||||| ||| |||||||||||| | |||||| ||||||||||||||||
Sbjct 1169 ACCAAGGACGAAAATCGACACTCGTTTGGGATTTCAACAAAGTGGTGCCTTACTTTCGAC 1228
Query 1052 GTACCTGGCCTTCTTCTCCTCTGTTTGAAAACAATGTCATGATGATCGACACTCCTCAAT 1111
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1229 GTACCTGGCCTTGTTCTCCTCTGTTTGAAAACAATGCCATGATGATCGACACTCCTCAAT 1288
Query 1112 GCAACGCCTCTTCTGCAGGAAGTAACTAAGTAGTTTACGCTATTAATCAGTTTTTGT--G 1169
||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||| |
Sbjct 1289 GCAACGCCTCTTCCGCAGGAAGTAACTAAGTAGTTTATGCTTTTAATCAGTTTATGTATG 1348
Query 1170 TAGGCCATTGAACTATCGTTTATGTTTTG 1198
||||| ||| ||||||| |||||||||||
Sbjct 1349 TAGGCTATTCAACTATCTTTTATGTTTTG 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60592057815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5