BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487178
Length=961
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03980.1 | Symbols: | SGNH hydrolase-type esterase superfam... 1465 0.0
> AT5G03980.1 | Symbols: | SGNH hydrolase-type esterase superfamily
protein | chr5:1074205-1075289 REVERSE LENGTH=972
Length=972
Score = 1465 bits (793), Expect = 0.0
Identities = 905/961 (94%), Gaps = 0/961 (0%)
Strand=Plus/Plus
Query 1 ATGTCTACGACCAAAGCACTATCGCTTCTTGTGTTTTTACTCTTCGTGTCCCTTGTTCAC 60
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1 ATGTCTACGACCAAAGCATTATCGCTTCTTGTGTTTATACTCTTCGTGTCCCTTGTTCAT 60
Query 61 GCATCGGATCAATGTCCGATCAACTCCATCTACCAATTCGGTGACTCCATAGCCGACACC 120
|||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 61 TCATCGGATCAATGTCCTATCAACTCTATCTACCAATTCGGTGACTCCATCTCCGACACT 120
Query 121 GGAAACTTAATCCGTAATGGCCCTGCTTCATCTCCCACTCTTAAACCCTTACCTCAACGG 180
|||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GGAAACTTAATCCGCAACGGCCCTGCTTCATCTCCCACTCCTAAACCCTTACCTCAACGG 180
Query 181 AAACACAACGTCTTTGTTAACTTCGCCGTTTCCGGAAGCACAGCACTCAACAGCTCTTTC 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAACACAACGTCTTTGTTAACTTCGGAGTTTCCGGAAGCACAGCACTCAACAGCTCTTTC 240
Query 241 TTCGCCGAGAGAAATCTCCACGTTCCGGCAACAAACACTCCTCTCTCCACACAGCTTGCT 300
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 241 TTCTCCGAGAGAAATCTCCACGTTCCGGCAACAAACACTCCTCTCTCCATGCAGCTTGCT 300
Query 301 TGGTTCAAGTCTCATCTACGTTCCACATGTCATGGCTCGTCTTCGGATTGCTTGAAGCAG 360
||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 301 TGGTTCAAGGGTCATCTACGTTCCACGTGTCACGGCTCTTCTTCGGATTGCTTGAAGCAC 360
Query 361 TCTCTCTTCATGGTCGGTGAGATAGGAGGCAACGACTACAACTACGGTTTCTTCCAAGGC 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTCTTTTCATGGTCGGTGAGATAGGAGGCAACGACTACAACTACGGTTTCTTCCAAGGC 420
Query 421 AAACCCATGGAAGAAATCAGAAGCTATATCCCTCATGTTGTTGGCGCCATCACAGCCGCG 480
||||| |||||||||||||||||||| |||||||| || ||||| ||||||||||||||
Sbjct 421 AAACCAATGGAAGAAATCAGAAGCTACATCCCTCACGTGGTTGGAGCCATCACAGCCGCA 480
Query 481 GCTAGAGAAGTAATCCGTGCCGGTGCAGTTAACGTGGTCGTCCCGGGAAACTTTCCAGTG 540
|||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 481 GCTAGAGAGGTGATCCGTGCTGGTGCGGTTAACGTGGTCGTCCCGGGAAACTTTCCAGTG 540
Query 541 GGATGTTTTCCGATTTACTTGACGTCTTTTCCCGTGAAAGATCCAAAAGCTTACGACGAC 600
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 541 GGATGTTTTCCGATTTACTTGACGTCTTTTCCCGTGAAAGATACAAAAGATTACGACGAC 600
Query 601 AAAGGTTGCTTGAAGCATCTCAACGAATTCGCAATGGATCACAATAACCAACTGCAAGGA 660
|| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 601 AACGGTTGCTTGACGCATCTCAACGAATTCGCAATGGATCACAATAACCAACTCCAAGAA 660
Query 661 GCTATAGCTTCTTTGAGAAAAGAGTTTCCAGGTGTGGCTATAGTCTACGGAGATTACTAC 720
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 661 GCTATAGCTTCTTTGAGAAAAGAGTTTCCAGACGTGGCTATAGTATACGGAGATTACTAC 720
Query 721 AACGCGTTTCAATACGTTCTACGCAGTGAAAGATTCGACAAGAGTGTAGCATTGAAATCG 780
|| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 721 AATGCGTTTCAATACGTTCTACGAAGTGAAAGATTCGACAAGAGTGTAGCTTTGAAATCG 780
Query 781 TGTTGCGGGATCGGCGGAGCTTACAACTACGACGGAAAGAGGCCTTGCGGAGCAGCGGGA 840
|||||||||| ||| ||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 781 TGTTGCGGGACCGGTGGAGCTTACAACTACGACGGAAAGAGGCCATACGGAGCAGTGGGA 840
Query 841 GTGCCGGTGTGTCAGAATCCAAACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAA 900
|| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTTCCGGTGTGTCAGAATCCACACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAA 900
Query 901 AAGGCTTATAGATTCATGTCTAATTTCTTGAACTATCAGATTCTTTCACAGATCAAGTGT 960
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 901 AAGGCTTATAGATTCATGTCTAAGTTCTTGAACAATCAGATTCTTTCACAGATCAAGTGT 960
Query 961 A 961
|
Sbjct 961 A 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47019161592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5