BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487179
Length=1278
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1075 0.0
> AT5G03990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G51940.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:1075671-1077549 FORWARD LENGTH=1386
Length=1386
Score = 1075 bits (582), Expect = 0.0
Identities = 706/765 (92%), Gaps = 11/765 (1%)
Strand=Plus/Plus
Query 104 TCTCGTCGAAATTTAGGGATTTTGTTCATTAAAATCTTCCTGATTTGGAAGGTATTTTCA 163
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 190 TCTCGTCGAAA-TTAGGGATTTTGTTCATT-AAATCTTCCTGATTTGGAAGGTATTTTCA 247
Query 164 TTGTCTTCTTCTGCAAAAAATTCAATCTTTGTCGGGTCATTATGAGTAATTGGAGAAGAC 223
|||||| | | || ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 248 TTGTCTGC-T-TGAAAAAAATTCAATCTTTGTCGGTTCATTATGAGTAATTGGAGAAGAC 305
Query 224 AAAAACCCAGAAACAACAACAATC-ATAATTATAACCATCAACGAGGGACGACGACGATG 282
|||||||||||||||||||| | | ||||||||| | ||||||| || ||||||||||
Sbjct 306 AAAAACCCAGAAACAACAAC-AGCAATAATTATAGTCGTCAACGA-GG--GACGACGATG 361
Query 283 ACGCAATCAGCATCAAAGCCACCTCTTGCTAATTGCAAGCTCTCTGTTCCGGCGTGGGAG 342
||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 362 ACGCAATCATCATCAAAGCCACCTCTTGCTAATTGCAAGATCTCTGTTCCAGCGTGGGAG 421
Query 343 AAGGATTTCTGTGCTGTGATTGGTTCAGTTCCATGGTGGAAAGTTGTAGAGGCGAAGCGG 402
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 422 AAGGATTTTTGTGCTGTGATTGGTTCAGTTCCATGGTGGAAAGTTGTAGAGGCCAAGCGG 481
Query 403 TTTATGCACATATACGATAGAGTGGTCCAGTGGGACGACTCAGCGGGGGAAGACGCATTC 462
||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 482 TTTATGCACATATACGATAGAGTGGTCCAATGGGACGACTCAGCTGGTGAAGACGCATTC 541
Query 463 AAGAACGCTAAATCCCGGTTCTGGGCAGAGATAAATGGCCTTA-CTTGTGACTTATCTTT 521
|||||||||||||| || |||||||||||||||||||| ||| ||||||||||||||||
Sbjct 542 AAGAACGCTAAATCTCGTTTCTGGGCAGAGATAAATGGT-TTAACTTGTGACTTATCTTT 600
Query 522 GCCTGATCCTGATGTCTACATTGATGATGTTGATTGGGATGCTGAAGTTGACACCGAGCT 581
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 601 GCCTGATCCTGATGTTTACATTGATGATGTTGATTGGGATGCTGAAGTTGACAATGAGTT 660
Query 582 GATTCTTGACCTTGAACGTGGTCCAGACCCTTTAGCAGAAGAACAGGAGCATGTCGTGAT 641
||| |||||||||||||||||||||||||||||| |||||||||| |||||||| |||||
Sbjct 661 GATACTTGACCTTGAACGTGGTCCAGACCCTTTAACAGAAGAACAAGAGCATGTTGTGAT 720
Query 642 ACTCGATGCTTTGGTCTTGTCTGGACAATATACCGGGCTTGGTTGGGGAACGGGTTGGGG 701
||||||||||||||| || |||||||| ||| |||||||||||||||||| ||||||||
Sbjct 721 ACTCGATGCTTTGGTTTTATCTGGACAGTATGGCGGGCTTGGTTGGGGAACTGGTTGGGG 780
Query 702 AGACGCTGAAGGGATTAACGAGGAGAATGTTGGAACGGGTAAACCAGAAAACTCATGGGA 761
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 781 TGACGCTGAAGGGATTAACGAGGAGAATGTTGGAAAGGGTAAACCAGAAAACTCATGGGG 840
Query 762 TAATCAGAAATGTGATGGATGGAACGAAGATTCTTGGGGAATAAAAGAGAAAACTGAATG 821
| ||||||||| |||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 841 TGATCAGAAATATGATGGATGGAATGAAGATTCTTGGGGGATAAAGGAGAAAACTGAAAC 900
Query 822 TTGGGATCATAACAACAACAACTTCAATGCCGAATCTTGGGATCA 866
|||||||||||||||||||||| ||| | || |||||||||||
Sbjct 901 TTGGGATCATAACAACAACAACACCAACACTGATTCTTGGGATCA 945
Score = 612 bits (331), Expect = 3e-174
Identities = 427/470 (91%), Gaps = 20/470 (4%)
Strand=Plus/Plus
Query 814 ACTGAATGTTGGGATCATAACAACAACAACTTCAATGCCGAATCTTGGGATCAGAAGAAA 873
||||| | |||||||||| |||||||||||||| || ||| ||||||||||||| |||
Sbjct 929 ACTGATTCTTGGGATCAT---AACAACAACTTCAAAGCTGAAACTTGGGATCAGAA-AAA 984
Query 874 -TGCAACAACAACAGCTTCAACCACAAGAAGGTTGAGAATTGGAATGGTAGGGATCaagg 932
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 985 CTGCAACAACAACAGCTTCAACTACAAGAAGGTTGAGAATTGGAATGGTAGGGATCAAGG 1044
Query 933 aagagagagcagagggtggagaaagagaggagaagttcaacatggaggagatcgagtgga 992
|||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1045 AAGAGAGAACAGAGGGTGGAGAAAGAGAGGAGAAGGGCGACATGGAGGAGAACGAGTGGA 1104
Query 993 ggaTTGTCGATGGAGGAATGGGAGAGGGAGAAGCAGAGGCGGGTTTCAGCAGCATTCGTC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1105 GGATTGTCGATGGAGGAATGGGAGAGGGAGAAGCAGAGGCGGGTTTCAGCAACATTCGGC 1164
Query 1053 GAATGCTTGGGGTTGGACTGAATCCTTCTGAATCAGACAGAGAGTCTCTGTTGATAATAC 1112
|||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| ||
Sbjct 1165 GAATGCATGGGGTTGGACTGAATCCTTCTGAATCAGACACAGAGTCTCTCTTGATAAAAC 1224
Query 1113 ATTTTT-GAGGAAAGAGCTGTAGTATAGTAGGTT-AACTATATAgtgtgagtgtggtgtg 1170
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| | |
Sbjct 1225 ATTTTTTGAGGAAAGAGCTGTAGTATAGTAGGTTTAACTATATAGTGTGAGTGTG-T-TC 1282
Query 1171 gtgtgtgtgtgtgtAGAAGTTTAGAATCATATTGATGGCTCAAAATTATTTTGTTTAAAT 1230
|||||||||||| | ||||||||| |||||||||||||||||||||| ||||
Sbjct 1283 C-GTGTGTGTGTGT-----T--AGAATCATACTGATGGCTCAAAATTATTTTGTCTAAAC 1334
Query 1231 GTTTCAGAGGATCTTATTACTTAAA-TGATATGC-TCATATAAGTTTCTG 1278
||||||||||||||||| ||||||| |||||||| | |||||||||||||
Sbjct 1335 GTTTCAGAGGATCTTATCACTTAAAATGATATGCCT-ATATAAGTTTCTG 1383
Score = 102 bits (55), Expect = 8e-21
Identities = 65/69 (94%), Gaps = 4/69 (6%)
Strand=Plus/Plus
Query 37 TTGATTTTTCTTCAACC-CATCTTCTTATAAATTC-TCTGTTTCGTTGCAGAGAGCTCTA 94
||||||||||||| ||| |||||||||||||| || ||||||||||||||||||||||||
Sbjct 92 TTGATTTTTCTTC-ACCTCATCTTCTTATAAA-TCATCTGTTTCGTTGCAGAGAGCTCTA 149
Query 95 AAAGAAACA 103
|||||||||
Sbjct 150 AAAGAAACA 158
Score = 67.6 bits (36), Expect = 3e-10
Identities = 36/36 (100%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1 ACCTGAAAAATTCGAAATTAAGAATGAAAAAGGAAA 36
||||||||||||||||||||||||||||||||||||
Sbjct 1 ACCTGAAAAATTCGAAATTAAGAATGAAAAAGGAAA 36
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62851082340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5