BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487180

Length=388
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03995.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   353    6e-97


> AT5G03995.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:1077483-1078304 
REVERSE LENGTH=455
Length=455

 Score =  353 bits (191),  Expect = 6e-97
 Identities = 334/395 (85%), Gaps = 41/395 (10%)
 Strand=Plus/Plus

Query  1    GTCACCACCAAACAGATAAAACACTGCCACTTTCTATATGGGGAAAGAGAGAATCAAAGA  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  1    GTCACCACCAAACAGATAAAACACTGGCACTTTCTATATGGGGAAAGAGAGAATCAAAGA  60

Query  61   ACAATGATTTTTGTGTTCTAACCCACAAAAGACATAACATTGCTCTTCTCAGTTTTCATC  120
            |||||||| ||| |||||||| |||   || | | | ||    | |||||||||||||||
Sbjct  61   ACAATGATATTT-TGTTCTAA-CCA-TCAA-A-A-AGCA----TATTCTCAGTTTTCATC  110

Query  121  TCCGCTCTAATGTTGGAGGACATCTTCAAACGATG-C-C-CTAAGAATGTTCTTCATGCT  177
            |||||||||||| ||||||||||||||| |||||| | | || |||||||||||||||||
Sbjct  111  TCCGCTCTAATGGTGGAGGACATCTTCACACGATGCCTCTCTGAGAATGTTCTTCATGCT  170

Query  178  TCACAGACACACATTTTTAAAATGGTAATAAAAAAGAATTTCTTTGGAGAAATCTGCACA  237
            ||||||||||||         |  |         |  | ||||||||||||||||||| |
Sbjct  171  TCACAGACACAC---------A--G---------A-CA-TTCTTTGGAGAAATCTGCAGA  208

Query  238  TGC-TTCTT-G--TTCTTTCCAAAGGTTCAAGAAGATGACGAACAATGGAACTCTCGAGC  293
             || ||||| |  ||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct  209  AGCTTTCTTCGTTTTCTTTCCAAAGGTTCATGAAGATGACCAACAGTGGAACTCTCGAGC  268

Query  294  CAGAGGCATGAAAGAAACTCGTACATTTTCCCGATCATCACCCTCCAAGCGTTTTGTATA  353
            ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  269  CAGAGGCATGAGAGAAACTCGTACATTTTCCCGATCATCACTCTCCAAGCGTTTTGTATA  328

Query  354  TTATACAAGAATTGAACTCTTATCATTAACAAGTT  388
            | || |||||||||| |||| |||||| |||||||
Sbjct  329  T-ATTCAAGAATTGAGCTCT-ATCATTCACAAGTT  361



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18297460636


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5