BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487184
Length=3017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04040.1 | Symbols: SDP1 | Patatin-like phospholipase family... 4573 0.0
> AT5G04040.1 | Symbols: SDP1 | Patatin-like phospholipase family
protein | chr5:1089342-1093179 FORWARD LENGTH=3275
Length=3275
Score = 4573 bits (2476), Expect = 0.0
Identities = 2785/2933 (95%), Gaps = 26/2933 (1%)
Strand=Plus/Plus
Query 101 TAATCGaaaaaagaaaaggaaaaaaGAAGCCGTCATGATCGGCCATTTCTCGGCCGAGTC 160
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TAATCGAAAAAAGAAAAGAAAAAAAGAAGCCGTCATGATCGGCCATTTCTCGGCCGAGTC 399
Query 161 TGAGTCTGACTCTGCGTCCGTGTCACCATTATC-GATCTCTTCTGTCTTATCTCGTCGCG 219
||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||
Sbjct 400 TGAGTCTGACTCTGCGTCCGTGTCACCATTATCAGATCGAGCCTGTCTTATCTCGTTGCG 459
Query 220 ATTCCCTATGCAAAAA---TCTTCTTTTTAAAATTGCCCCATTTATTTCTGATCTCTTCT 276
|||||||||||||||| |||||||||| ||| |||||||||| |||||||||||||
Sbjct 460 ATTCCCTATGCAAAAATCTTCTTCTTTTTTTTATTCCCCCATTTATCTCTGATCTCTTCT 519
Query 277 CTCTTCCCAAGTAAACCTCTCTGCTTCACGTCTCTTCTTTGCTTGTCGATTTTCTCCAGA 336
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 520 CTCTTCTCAAGTAAACCTCTCTGCTTCACGTCTCTTCTTTTCTTGTCGATTTTC-CC--- 575
Query 337 ATCAGGTAAACAGTTGGAAACACACACAAAATCATCTTCGAATC---AATGGATATAAGT 393
||| ||| |||||| |||||||| |||| ||||||||||||| |||||||||||||
Sbjct 576 --CAGATAATCAGTTGAAAACACACCCAAATTCATCTTCGAATCAATAATGGATATAAGT 633
Query 394 AATGAGGCTAGTGTTGATCCCTTTTCGATTGGACCCTCATCGATCATGGGTCGAACCATT 453
|||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 634 AATGAGGCTAGTGTCGATCCCTTTTCGATTGGACCATCATCTATCATGGGTCGAACCATT 693
Query 454 GCTTTCAGAGTCTTGTTCTGTAGATCAATGTCACAGCTTAGGCGTGATCTCTTTCGGTTC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 694 GCTTTCAGAGTCTTGTTCTGTAGATCAATGTCACAGCTTAGGCGTGATCTCTTTCGGTTC 753
Query 514 TTGTTGCATTGGTTTCTTAGATTTAAGCTGACCGTTTCACCGTTTGTGTCATGGTTTCAT 573
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 754 TTGTTGCATTGGTTTCTTAGATTTAAGCTGACCGTTTCACCGTTTGTGTCGTGGTTTCAT 813
Query 574 CCCCGGAACCCTCAAGGGATTTTAGCAGTGGTTACAATCATTGC-TTTCGTGTTGAAACG 632
|| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 814 CCTCGGAACCCTCAAGGGATTTTAGCGGTGGTTACAATCATTGCCTTT-GTGTTGAAACG 872
Query 633 TTACACGAATGTGAAAATGAAGGCGGAAATGGCTTACCGGAGGAAATTCTGGAGGAACAT 692
||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||
Sbjct 873 ATACACGAATGTGAAAATAAAGGCGGAAATGGCTTACCGGAGGAAGTTTTGGAGGAATAT 932
Query 693 GATGCGTACGGCTTTGACTTATGAGGAATGGGCTCATGCTGCTAAGATGTTAGAAAAGGA 752
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 933 GATGCGGACGGCTTTGACTTATGAGGAATGGGCTCATGCTGCTAAGATGTTAGAGAAGGA 992
Query 753 GACATTAAAGATGAATGAATCTGATCTCTATGATGAAGAATTGGTTAAGAACAAGCTTCA 812
||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 993 AACACCAAAGATGAATGAATCTGATCTTTATGATGAAGAGTTGGTTAAGAACAAGCTTCA 1052
Query 813 GGAGCTTCGTCATCGTCGCCAAGAAGCCTCACTTAGAGACATCATGTTTTGTATGAGAGC 872
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 1053 GGAGCTTCGTCATCGTCGCCAAGAAGGCTCACTTAGAGACATTATGTTTTGTATGAGAGC 1112
Query 873 TGATCTCGTGAGGAATCTCGGTAATATGTGTAATTCGGAGCTTCATAAAGGTAGACTTCA 932
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 TGATTTGGTGAGGAATCTCGGTAATATGTGTAATTCGGAGCTTCATAAAGGTAGACTTCA 1172
Query 933 GGTTCCTAGACATATCAAAGAGTATATCGACGAGGTCTCTACTCAATTGAGAATGGTTTG 992
|||||||||||||||||||||||| || || ||||| |||||||| ||||||||||||||
Sbjct 1173 GGTTCCTAGACATATCAAAGAGTACATTGATGAGGTGTCTACTCAGTTGAGAATGGTTTG 1232
Query 993 TAACTCTGACTCGGAGGAGCTTGCTTTAGAAGAGAAGCTTTCCTTTATGCATGAAACGCG 1052
||||||||| || ||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 1233 TAACTCTGATTCAGAGGAGCTTTCTTTAGAAGAGAAGCTTTCTTTTATGCATGAAACACG 1292
Query 1053 ACACGCCTTTGGTAGAACGGCTTTGCTTCTGAGTGGTGGGGCTTCTCTTGGTGCCTTTCA 1112
|| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1293 GCATGCCTTTGGTAGAACGGCTTTGCTTTTGAGTGGTGGGGCTTCTCTTGGTGCGTTTCA 1352
Query 1113 TGTAGGTGTGGTTAGGACTCTGGTTGAGCATAAGCTTTTACCTCGGATAATTGCTGGTTC 1172
||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1353 TGTTGGTGTGGTTAGGACTTTGGTTGAGCATAAGCTTTTACCTCGAATAATTGCTGGTTC 1412
Query 1173 TAGTGTTGGATCCATAATTTGTGCTGTTGTGGCCTCAAGGTCTTGGCCAGAACTACAGAG 1232
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 TAGTGTTGGATCCATCATTTGTGCTGTTGTGGCCTCAAGGTCTTGGCCAGAACTACAGAG 1472
Query 1233 TTTCTTTGAGAATTCTTTGCATTCTTTACAGTTCTTTGATCAGCTCGGAAGCGTGTTCTC 1292
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1473 TTTCTTTGAGAATTCTTTGCATTCTTTACAGTTCTTTGATCAGCTCGGAGGCGTGTTCTC 1532
Query 1293 AATCGTGAAACGGGTAATGACACAAGGTGCTCTACATGATATCAGACAGTTGCAATGTAT 1352
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1533 AATAGTGAAACGGGTAATGACACAAGGGGCTCTACACGATATCAGACAGTTGCAATGTAT 1592
Query 1353 GCTTAGAAACCTCACAAGTAATCTCACATTCCAAGAAGCTTATGACATGACAGGAAGGAT 1412
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 GCTTAGAAACCTCACAAGCAATCTCACATTCCAAGAAGCTTATGACATGACAGGAAGGAT 1652
Query 1413 TCTCGGGATCACTGTTTGCTCCCCAAGAAAGCATGAACCTCCTCGGTGTCTTAACTATTT 1472
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1653 TCTCGGGATCACCGTTTGCTCCCCAAGAAAGCATGAACCTCCTCGGTGTCTTAACTATTT 1712
Query 1473 GACTTCGCCTCATGTGGTTATATGGAGCGCAGTGACTGCATCTTGTGCTTTTCCTGGTCT 1532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1713 GACTTCGCCTCATGTGGTTATATGGAGCGCAGTGACTGCTTCTTGTGCTTTTCCTGGTCT 1772
Query 1533 CTTTGAAGCTCAAGAACTAATGGCTAAAGATCGAAGTGGAGAAATTGTACCGTATCATCC 1592
||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1773 CTTTGAAGCTCAAGAGCTAATGGCTAAAGATCGAAGTGGAGAGATCGTACCGTATCATCC 1832
Query 1593 ACCTTTCAATTTGGATCCAGAAGTAGGCACTAA-T--TCATCTGGACGTCGGTGGAGAGA 1649
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct 1833 ACCTTTCAATTTGGATCCAGAAGTAGGCACTAAATCATCATCTGGACGCCGGTGGAGAGA 1892
Query 1650 TGGTAGTTTGGAGGTTGATTTACCAATGATGCAGCTTAAAGAACTGTTCAATGTCAATCA 1709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1893 TGGTAGTTTGGAGGTTGATTTACCAATGATGCAGCTTAAAGAACTGTTCAATGTCAATCA 1952
Query 1710 TTTTATTGTGAGCCAAGCCAATCCTCACATTGCTCCGTTACTGCGTCTAAAGGATTTAGT 1769
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1953 TTTTATTGTGAGCCAAGCCAATCCTCACATTGCTCCATTACTGCGTCTAAAGGATTTAGT 2012
Query 1770 TCGAGCTTACGGTGGTAGATTCGCAGCTAAGCTCGCGCATCTAGTGGAGATGGAGGTCAA 1829
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 TCGAGCTTATGGTGGTAGATTCGCAGCTAAGCTCGCGCATCTAGTGGAGATGGAGGTCAA 2072
Query 1830 ACATAGATGCAACCAGGTATTAGAGCTCGGTTTTCCGCTCGGTGGACTGGCAAAGCTTTT 1889
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 2073 ACATAGATGCAACCAGGTATTAGAGCTCGGTTTTCCTCTCGGTGGACTCGCAAAGCTTTT 2132
Query 1890 TGCTCAGGAGTGGGAAGGTGATGTAACAGTTGTAATGCCTGCTACTCTAGCTCAGTACTC 1949
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 2133 TGCTCAGGAGTGGGAAGGTGATGTTACAGTTGTAATGCCTGCTACTCTTGCTCAGTACTC 2192
Query 1950 GAAGATTATACAAAACCCGACTCATGTCGAGCTTCAGAAAGCGGCTAACCAAGGAAGAAG 2009
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2193 GAAGATTATACAAAATCCGACTCATGTCGAGCTTCAGAAAGCGGCTAACCAAGGAAGAAG 2252
Query 2010 ATGCACGTGGGAGAAGCTCTCAGCCATAAAATCAAACTGTGGGATCGAGCTTGCGCTTGA 2069
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2253 ATGCACTTGGGAGAAGCTCTCAGCCATAAAATCAAACTGCGGGATCGAGCTTGCGCTTGA 2312
Query 2070 TGATTCTGTAGCTATTCTTAACCATATGCGTAGGCTCAAGAAAAGCGCCGAGAGAGCCGC 2129
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||
Sbjct 2313 TGATTCTGTAGCTATTCTTAACCATATGCGGAGGCTCAAGAAAAGTGCGGAGAGAGCCGC 2372
Query 2130 CACTGCCACGTCATCGTCTCATCACGGATTAGCATCAACCACCCGATTCAATGCTTCAAG 2189
|||||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 2373 CACTGCCACGTCTTCGTCTCATCACGGATTGGCTTCAACCACCAGATTCAATGCTTCAAG 2432
Query 2190 AAGAATCCCATCTTGGAACGTCATTGCCAGAGAGAACTCAACTGGTTCACTGGATGACCT 2249
|||||||||||||||||||||| ||||||||||||||||||| || ||||||||||| ||
Sbjct 2433 AAGAATCCCATCTTGGAACGTCCTTGCCAGAGAGAACTCAACAGGCTCACTGGATGATCT 2492
Query 2250 AGTCGCTGACAATAACCTCCACGCTTCTTCGGGCAGGAATTTAAGCGACAGTGAAACCGA 2309
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2493 AGTCACTGACAATAACCTCCACGCTTCTTCGGGCAGGAATTTAAGCGACAGTGAAACAGA 2552
Query 2310 GAGCGTGGAGTTGAGTTCTTGGACAAGAACTGGTGGACCTTTAATGAGAACAGCTTCTGC 2369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2553 GAGCGTGGAGTTGAGTTCTTGGACAAGAACTGGTGGACCTTTAATGAGAACAGCTTCTGC 2612
Query 2370 TAATAAGTTCATCGATTTTGTTCAAAGTCTTGATATCGACATTGCATTGGTCAGAGGATT 2429
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2613 TAATAAGTTCATTGATTTTGTTCAGAGTCTTGATATCGACATTGCATTGGTCAGAGGATT 2672
Query 2430 TAGTAGCAGTCCCAATTCTCCAGCAGTTCCTCCTGGTGGGTCGTTTACTCCAAGCCCGAG 2489
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2673 TAGTAGCAGTCCCAATTCTCCAGCAGTTCCTCCTGGTGGCTCGTTTACTCCAAGCCCGAG 2732
Query 2490 ATCCATAGCGGCTCACTCCGAGAGCGAATCAAACAGCAATAGCAACAATCTTGGAACAAG 2549
||||||||||||||| || || | ||||||||||||||||||||||||||||||||||||
Sbjct 2733 ATCCATAGCGGCTCATTCGGATATCGAATCAAACAGCAATAGCAACAATCTTGGAACAAG 2792
Query 2550 CACTTCAAGCATAACAGTTACTGAAGGTGATCTTCTACAGCCAGAGAGAACGAGTAACGG 2609
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2793 CACTTCAAGCATAACAGTTACTGAAGGTGATCTTCTACAGCCTGAGAGAACGAGTAACGG 2852
Query 2610 GTTTGTGTTAAACGTCGTCAAAAGAGAGAACTTGGGAATGTCGTCAATTGGGAATCAAAA 2669
||||||||||||||||| ||||||||||||||||||||| | || |||||||| |||||
Sbjct 2853 ATTTGTGTTAAACGTCGTTAAAAGAGAGAACTTGGGAATGCCATCGATTGGGAACCAAAA 2912
Query 2670 TACAGAGTTACCGGAGAGTGTACAGCTCGATATACCGGAGAAGGAGATGGATAATAGCTC 2729
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2913 TACAGAGTTACCAGAGAGTGTACAGCTCGATATACCGGAGAAGGAGATGGATTGTAGCTC 2972
Query 2730 TGTATCAGAACATGAAGATGACGATAaagaagaa-gaagaagaaCATAACGGCTCGAGTC 2788
|||||||||||| ||||| || ||||| || || |||||||||||||||||||||||||
Sbjct 2973 TGTATCAGAACACGAAGAAGATGATAACGAC-AATGAAGAAGAACATAACGGCTCGAGTC 3031
Query 2789 TGGTTACTGTTTCTTCAGAAGATTCCGGTTTACAAGAACCGGTGACTGGTAGTGTTATAG 2848
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3032 TGGTTACTGTTTCTTCAGAAGATTCCGGTTTACAAGAACCGGTGTCTGGTAGTGTTATAG 3091
Query 2849 ATGGTTAGAGTG--ATTGATTCAAGTGA--ATAGATTCTCAATTAAATTTGCAGAGTTTC 2904
||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 3092 ATGCTTAGAGTGTGATTGATTCAAGTGAGTATAGATTCTTAATTAAATTTGCAGAGTTTC 3151
Query 2905 CAAAGGGTTTGGTGCGCCTCTTGTGTATGTTTGCATTGCTTATTGTTTGAAATTCATTTG 2964
|||||||||| |||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 3152 CAAAGGGTTTAGTGCACCACTTGTGTATGTTTGTATTGCTTATTGTTTGAAATTCATTTG 3211
Query 2965 TGAAATCGAAATATATCTGTAAATTTCAGaaaaaaaTTCTCTCATTCATTACA 3017
||||||||||||||||||||||||| ||||||| | ||||||||| |||||||
Sbjct 3212 TGAAATCGAAATATATCTGTAAATT-CAGAAAATA-TTCTCTCATCCATTACA 3262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149999159570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5